Wall clock time and date at job start Mon Mar 30 2020 03:40:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.47011 * 2 1
4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3
5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1
6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1
7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2
8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2
9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4
10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4
11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4
12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3
13 13 C 1.46901 * 110.99540 * 176.04541 * 12 2 1
14 14 C 1.39328 * 111.00136 * 300.00153 * 12 2 1
15 15 C 1.39399 * 120.86803 * 299.71921 * 14 12 2
16 16 C 1.37937 * 119.09381 * 179.79891 * 15 14 12
17 17 N 1.31966 * 120.88507 * 0.48797 * 16 15 14
18 18 C 1.32010 * 121.92040 * 359.74403 * 17 16 15
19 19 C 1.38087 * 120.80721 * 0.02562 * 18 17 16
20 20 F 1.35103 * 120.48607 * 179.97438 * 19 18 17
21 21 H 1.09004 * 109.46658 * 60.00195 * 1 2 3
22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3
24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4
25 25 H 1.08995 * 109.47220 * 60.00355 * 13 12 2
26 26 H 1.09003 * 109.46694 * 180.02562 * 13 12 2
27 27 H 1.08998 * 109.47259 * 299.99701 * 13 12 2
28 28 H 1.08005 * 120.45025 * 0.02562 * 15 14 12
29 29 H 1.08007 * 119.55505 * 180.22756 * 16 15 14
30 30 H 1.07999 * 119.59636 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7106 -1.2304
5 1 2.6533 -1.5887 -1.1311
6 6 1.7041 -0.2362 -2.4826
7 7 0.9480 0.8330 -2.6035
8 14 2.3331 -1.1125 -4.0077
9 1 3.1574 -2.2796 -3.6035
10 1 1.1815 -1.5775 -4.8219
11 1 3.1609 -0.1766 -4.8103
12 7 2.0196 -0.6924 1.1996
13 6 3.4850 -0.7945 1.1872
14 6 1.5728 -0.0606 2.3582
15 6 1.9071 1.2665 2.6235
16 6 1.4414 1.8572 3.7796
17 7 0.6970 1.1805 4.6337
18 6 0.3619 -0.0788 4.4224
19 6 0.7835 -0.7418 3.2868
20 9 0.4372 -2.0307 3.0773
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3633 0.5139 0.8899
24 1 0.7173 1.1669 -3.4844
25 1 3.9186 0.2051 1.1592
26 1 3.8208 -1.3116 2.0861
27 1 3.8029 -1.3532 0.3069
28 1 2.5194 1.8255 1.9313
29 1 1.6929 2.8861 3.9908
30 1 -0.2494 -0.5968 5.1465
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000699618976.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:29
Heat of formation + Delta-G solvation = -16.228723 kcal
Electronic energy + Delta-G solvation = -15534.597362 eV
Core-core repulsion = 12858.061167 eV
Total energy + Delta-G solvation = -2676.536196 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.102 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-49.79299 -41.32432 -38.70186 -35.07662 -32.20046 -31.83499 -31.05402 -27.61579
-26.26916 -24.64526 -23.86751 -21.71711 -18.79872 -18.47003 -17.87779 -17.67129
-17.12208 -16.53805 -15.64597 -15.49105 -15.27261 -14.93871 -14.42987 -14.33115
-14.12639 -13.71370 -13.12822 -13.04726 -12.80849 -12.68555 -12.25067 -12.13275
-12.11090 -11.09414 -10.73370 -10.58964 -10.44517 -9.91573 -9.32494 -8.17383
-6.29594 -0.03216 0.00975 1.40685 1.43487 1.54600 2.38488 2.62741
2.88986 3.12244 3.20215 3.50849 3.84577 3.90229 4.24665 4.42697
4.56631 4.60375 4.68740 4.85386 4.86140 4.92781 5.04140 5.13251
5.33430 5.53674 5.63346 5.74209 6.08349 6.15849 6.62934 6.79295
6.81058 7.39564 8.89238
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.043072 B = 0.008106 C = 0.007860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.912804 B = 3453.512273 C = 3561.630763
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.227 3.773
3 H -0.014 1.014
4 C -0.524 4.524
5 H 0.063 0.937
6 C 0.015 3.985
7 N -0.918 5.918
8 Si 0.963 3.037
9 H -0.267 1.267
10 H -0.282 1.282
11 H -0.279 1.279
12 N -0.522 5.522
13 C 0.047 3.953
14 C 0.107 3.893
15 C -0.185 4.185
16 C 0.104 3.896
17 N -0.478 5.478
18 C 0.082 3.918
19 C 0.040 3.960
20 F -0.133 7.133
21 H 0.068 0.932
22 H 0.026 0.974
23 H 0.014 0.986
24 H 0.264 0.736
25 H 0.028 0.972
26 H 0.068 0.932
27 H 0.074 0.926
28 H 0.139 0.861
29 H 0.194 0.806
30 H 0.195 0.805
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.021 0.447 10.408 10.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.122 3.878
3 H 0.003 0.997
4 C -0.562 4.562
5 H 0.082 0.918
6 C -0.184 4.184
7 N -0.557 5.557
8 Si 0.788 3.212
9 H -0.191 1.191
10 H -0.208 1.208
11 H -0.204 1.204
12 N -0.244 5.244
13 C -0.099 4.099
14 C 0.004 3.996
15 C -0.207 4.207
16 C -0.053 4.053
17 N -0.187 5.187
18 C -0.076 4.076
19 C 0.018 3.982
20 F -0.111 7.111
21 H 0.086 0.914
22 H 0.045 0.955
23 H 0.033 0.967
24 H 0.073 0.927
25 H 0.047 0.953
26 H 0.087 0.913
27 H 0.093 0.907
28 H 0.157 0.843
29 H 0.211 0.789
30 H 0.212 0.788
Dipole moment (debyes) X Y Z Total
from point charges 1.470 0.439 10.985 11.092
hybrid contribution 0.673 -0.230 -1.995 2.118
sum 2.143 0.209 8.991 9.245
Atomic orbital electron populations
1.21616 0.97756 0.98886 0.99380 1.19151 0.92190 0.90888 0.85572
0.99697 1.21394 1.31717 1.12568 0.90528 0.91844 1.25692 0.95187
0.95677 1.01881 1.70002 1.37434 1.23967 1.24286 0.85429 0.78096
0.78626 0.79027 1.19110 1.20809 1.20422 1.59675 1.12041 1.52239
1.00440 1.22243 0.84827 1.00364 1.02490 1.19708 0.95266 0.92447
0.92217 1.22838 1.02731 0.95026 1.00104 1.23122 0.92236 1.01146
0.88789 1.67843 1.12589 1.07067 1.31175 1.23184 0.98621 0.91119
0.94664 1.19100 1.01070 0.80648 0.97424 1.91465 1.90254 1.34340
1.95064 0.91357 0.95511 0.96692 0.92711 0.95344 0.91280 0.90733
0.84299 0.78878 0.78786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.95 8.85 71.98 0.64 -5.32 16
2 C 0.23 11.35 1.85 44.17 0.08 11.43 16
3 H -0.01 -0.77 7.21 -2.39 -0.02 -0.79 16
4 C -0.52 -28.12 7.92 25.60 0.20 -27.92 16
5 H 0.06 3.38 6.39 -2.91 -0.02 3.36 16
6 C 0.01 0.80 5.31 84.65 0.45 1.25 16
7 N -0.92 -51.46 11.33 21.45 0.24 -51.22 16
8 Si 0.96 42.69 29.54 68.60 2.03 44.71 16
9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16
12 N -0.52 -22.55 4.51 -699.35 -3.15 -25.71 16
13 C 0.05 1.77 8.98 127.69 1.15 2.92 16
14 C 0.11 4.04 3.32 38.56 0.13 4.17 16
15 C -0.19 -5.99 8.73 22.48 0.20 -5.80 16
16 C 0.10 2.78 11.17 84.60 0.95 3.72 16
17 N -0.48 -13.48 10.36 -195.98 -2.03 -15.51 16
18 C 0.08 2.32 11.16 84.63 0.94 3.26 16
19 C 0.04 1.39 7.36 22.57 0.17 1.56 16
20 F -0.13 -4.92 17.15 44.97 0.77 -4.15 16
21 H 0.07 3.73 6.08 -2.38 -0.01 3.72 16
22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
23 H 0.01 0.67 7.22 -2.39 -0.02 0.65 16
24 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16
25 H 0.03 1.01 7.54 -2.39 -0.02 1.00 16
26 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16
27 H 0.07 2.97 6.23 -2.39 -0.01 2.95 16
28 H 0.14 4.47 7.21 -2.91 -0.02 4.45 16
29 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16
30 H 0.20 4.06 8.06 -2.91 -0.02 4.04 16
Total: -1.00 -60.50 257.42 3.90 -56.60
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: 1.14 Total: 5.99 kcal
Atomic # 6 Polarization: -15.62 SS G_CDS: 4.90 Total: -10.72 kcal
Atomic # 7 Polarization: -87.49 SS G_CDS: -4.94 Total: -92.43 kcal
Atomic # 9 Polarization: -4.92 SS G_CDS: 0.77 Total: -4.15 kcal
Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal
Total: -60.50 3.90 -56.60 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699618976.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.370 kcal
(2) G-P(sol) polarization free energy of solvation -60.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.598 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.229 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds