Wall clock time and date at job start Mon Mar 30 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46901 * 110.99540 * 176.04541 * 12 2 1 14 14 C 1.39328 * 111.00136 * 300.00153 * 12 2 1 15 15 C 1.39399 * 120.86803 * 299.71921 * 14 12 2 16 16 C 1.37937 * 119.09381 * 179.79891 * 15 14 12 17 17 N 1.31966 * 120.88507 * 0.48797 * 16 15 14 18 18 C 1.32010 * 121.92040 * 359.74403 * 17 16 15 19 19 C 1.38087 * 120.80721 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.48607 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.47220 * 60.00355 * 13 12 2 26 26 H 1.09003 * 109.46694 * 180.02562 * 13 12 2 27 27 H 1.08998 * 109.47259 * 299.99701 * 13 12 2 28 28 H 1.08005 * 120.45025 * 0.02562 * 15 14 12 29 29 H 1.08007 * 119.55505 * 180.22756 * 16 15 14 30 30 H 1.07999 * 119.59636 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5728 -0.0606 2.3582 15 6 1.9071 1.2665 2.6235 16 6 1.4414 1.8572 3.7796 17 7 0.6970 1.1805 4.6337 18 6 0.3619 -0.0788 4.4224 19 6 0.7835 -0.7418 3.2868 20 9 0.4372 -2.0307 3.0773 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7173 1.1669 -3.4844 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3116 2.0861 27 1 3.8029 -1.3532 0.3069 28 1 2.5194 1.8255 1.9313 29 1 1.6929 2.8861 3.9908 30 1 -0.2494 -0.5968 5.1465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699618976.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:29 Heat of formation + Delta-G solvation = -16.228723 kcal Electronic energy + Delta-G solvation = -15534.597362 eV Core-core repulsion = 12858.061167 eV Total energy + Delta-G solvation = -2676.536196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.79299 -41.32432 -38.70186 -35.07662 -32.20046 -31.83499 -31.05402 -27.61579 -26.26916 -24.64526 -23.86751 -21.71711 -18.79872 -18.47003 -17.87779 -17.67129 -17.12208 -16.53805 -15.64597 -15.49105 -15.27261 -14.93871 -14.42987 -14.33115 -14.12639 -13.71370 -13.12822 -13.04726 -12.80849 -12.68555 -12.25067 -12.13275 -12.11090 -11.09414 -10.73370 -10.58964 -10.44517 -9.91573 -9.32494 -8.17383 -6.29594 -0.03216 0.00975 1.40685 1.43487 1.54600 2.38488 2.62741 2.88986 3.12244 3.20215 3.50849 3.84577 3.90229 4.24665 4.42697 4.56631 4.60375 4.68740 4.85386 4.86140 4.92781 5.04140 5.13251 5.33430 5.53674 5.63346 5.74209 6.08349 6.15849 6.62934 6.79295 6.81058 7.39564 8.89238 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043072 B = 0.008106 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.912804 B = 3453.512273 C = 3561.630763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.227 3.773 3 H -0.014 1.014 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.522 5.522 13 C 0.047 3.953 14 C 0.107 3.893 15 C -0.185 4.185 16 C 0.104 3.896 17 N -0.478 5.478 18 C 0.082 3.918 19 C 0.040 3.960 20 F -0.133 7.133 21 H 0.068 0.932 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.194 0.806 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 0.447 10.408 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.122 3.878 3 H 0.003 0.997 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.244 5.244 13 C -0.099 4.099 14 C 0.004 3.996 15 C -0.207 4.207 16 C -0.053 4.053 17 N -0.187 5.187 18 C -0.076 4.076 19 C 0.018 3.982 20 F -0.111 7.111 21 H 0.086 0.914 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.211 0.789 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 1.470 0.439 10.985 11.092 hybrid contribution 0.673 -0.230 -1.995 2.118 sum 2.143 0.209 8.991 9.245 Atomic orbital electron populations 1.21616 0.97756 0.98886 0.99380 1.19151 0.92190 0.90888 0.85572 0.99697 1.21394 1.31717 1.12568 0.90528 0.91844 1.25692 0.95187 0.95677 1.01881 1.70002 1.37434 1.23967 1.24286 0.85429 0.78096 0.78626 0.79027 1.19110 1.20809 1.20422 1.59675 1.12041 1.52239 1.00440 1.22243 0.84827 1.00364 1.02490 1.19708 0.95266 0.92447 0.92217 1.22838 1.02731 0.95026 1.00104 1.23122 0.92236 1.01146 0.88789 1.67843 1.12589 1.07067 1.31175 1.23184 0.98621 0.91119 0.94664 1.19100 1.01070 0.80648 0.97424 1.91465 1.90254 1.34340 1.95064 0.91357 0.95511 0.96692 0.92711 0.95344 0.91280 0.90733 0.84299 0.78878 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.85 71.98 0.64 -5.32 16 2 C 0.23 11.35 1.85 44.17 0.08 11.43 16 3 H -0.01 -0.77 7.21 -2.39 -0.02 -0.79 16 4 C -0.52 -28.12 7.92 25.60 0.20 -27.92 16 5 H 0.06 3.38 6.39 -2.91 -0.02 3.36 16 6 C 0.01 0.80 5.31 84.65 0.45 1.25 16 7 N -0.92 -51.46 11.33 21.45 0.24 -51.22 16 8 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 N -0.52 -22.55 4.51 -699.35 -3.15 -25.71 16 13 C 0.05 1.77 8.98 127.69 1.15 2.92 16 14 C 0.11 4.04 3.32 38.56 0.13 4.17 16 15 C -0.19 -5.99 8.73 22.48 0.20 -5.80 16 16 C 0.10 2.78 11.17 84.60 0.95 3.72 16 17 N -0.48 -13.48 10.36 -195.98 -2.03 -15.51 16 18 C 0.08 2.32 11.16 84.63 0.94 3.26 16 19 C 0.04 1.39 7.36 22.57 0.17 1.56 16 20 F -0.13 -4.92 17.15 44.97 0.77 -4.15 16 21 H 0.07 3.73 6.08 -2.38 -0.01 3.72 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.01 0.67 7.22 -2.39 -0.02 0.65 16 24 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.03 1.01 7.54 -2.39 -0.02 1.00 16 26 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 27 H 0.07 2.97 6.23 -2.39 -0.01 2.95 16 28 H 0.14 4.47 7.21 -2.91 -0.02 4.45 16 29 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.20 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -60.50 257.42 3.90 -56.60 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.14 Total: 5.99 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.90 Total: -10.72 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -4.94 Total: -92.43 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.77 Total: -4.15 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.50 3.90 -56.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699618976.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.370 kcal (2) G-P(sol) polarization free energy of solvation -60.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds