Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46511 * 109.46571 * 2 1 4 4 C 1.36874 * 119.99429 * 264.86314 * 3 2 1 5 5 H 1.08000 * 119.99936 * 146.46349 * 4 3 2 6 6 C 1.39044 * 120.00312 * 326.45576 * 4 3 2 7 7 N 1.31367 * 119.99800 * 156.26095 * 6 4 3 8 8 Si 1.86799 * 120.00011 * 336.26844 * 6 4 3 9 9 H 1.48507 * 109.47207 * 95.31952 * 8 6 4 10 10 H 1.48496 * 109.47008 * 215.31729 * 8 6 4 11 11 H 1.48500 * 109.47235 * 335.32015 * 8 6 4 12 12 C 1.34768 * 120.00282 * 84.86977 * 3 2 1 13 13 O 1.21596 * 119.99887 * 175.20981 * 12 3 2 14 14 C 1.47750 * 120.00201 * 355.20266 * 12 3 2 15 15 N 1.31571 * 126.05149 * 0.35957 * 14 12 3 16 16 N 1.28854 * 108.68644 * 179.82604 * 15 14 12 17 17 H 0.96996 * 125.74385 * 180.14042 * 16 15 14 18 18 C 1.34590 * 108.51336 * 0.43624 * 16 15 14 19 19 C 1.50699 * 126.18178 * 179.74791 * 18 16 15 20 20 N 1.30874 * 107.63962 * 359.73556 * 18 16 15 21 21 H 1.08996 * 109.46516 * 185.89485 * 1 2 3 22 22 H 1.08996 * 109.47387 * 305.89468 * 1 2 3 23 23 H 1.08998 * 109.47151 * 65.89993 * 1 2 3 24 24 H 1.08994 * 109.47182 * 240.00246 * 2 1 3 25 25 H 1.08994 * 109.47064 * 119.99154 * 2 1 3 26 26 H 0.97005 * 119.99720 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47418 * 270.00483 * 19 18 16 28 28 H 1.09005 * 109.46967 * 30.00053 * 19 18 16 29 29 H 1.08996 * 109.47051 * 149.99753 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.3464 1.9911 -1.1807 5 1 2.1827 3.0515 -1.3046 6 6 2.8905 1.2456 -2.2205 7 7 2.7797 1.6679 -3.4595 8 14 3.7791 -0.3566 -1.8557 9 1 2.8364 -1.4929 -2.0156 10 1 4.9144 -0.5188 -2.7991 11 1 4.2926 -0.3317 -0.4626 12 6 2.1444 2.0515 1.1624 13 8 2.6310 3.1658 1.1720 14 6 1.6914 1.4323 2.4251 15 7 1.1567 0.2370 2.5532 16 7 0.8905 0.0350 3.7976 17 1 0.4924 -0.7679 4.1688 18 6 1.2516 1.1281 4.4948 19 6 1.1111 1.3209 5.9828 20 7 1.7471 1.9934 3.6471 21 1 -0.3632 -1.0222 0.1055 22 1 -0.3634 0.6025 0.8325 23 1 -0.3633 0.4196 -0.9381 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.1590 1.1475 -4.1850 27 1 0.1406 1.7661 6.2015 28 1 1.1891 0.3556 6.4832 29 1 1.9022 1.9801 6.3401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700865744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = 76.805509 kcal Electronic energy + Delta-G solvation = -15644.282469 eV Core-core repulsion = 12991.700502 eV Total energy + Delta-G solvation = -2652.581967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.08220 -38.50627 -35.20435 -33.12771 -32.79530 -32.06065 -29.65983 -28.07352 -25.64712 -23.23568 -22.66351 -21.45030 -19.24770 -17.85421 -16.88911 -16.21510 -15.98725 -15.60814 -14.04971 -13.97511 -13.72227 -13.43903 -13.09169 -12.82352 -12.60003 -12.35638 -11.92849 -11.57493 -11.35064 -10.93945 -10.67540 -10.23301 -10.13190 -9.90600 -9.73264 -9.15868 -9.00338 -8.68734 -7.80095 -6.44941 -3.93188 1.80189 2.59128 2.90459 3.06869 3.24564 3.30681 3.92365 4.14246 4.26012 4.58847 4.68805 4.96594 5.21086 5.28221 5.49353 5.66205 5.77172 6.09090 6.16757 6.31599 6.47875 6.61479 6.67591 6.88332 7.09274 7.50635 8.20749 8.33594 8.58582 8.93195 9.27474 9.76740 10.65981 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043454 B = 0.009160 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.204454 B = 3056.082952 C = 3272.877595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 N -0.437 5.437 4 C -0.310 4.310 5 H 0.112 0.888 6 C 0.063 3.937 7 N -0.852 5.852 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.535 3.465 13 O -0.544 6.544 14 C 0.182 3.818 15 N -0.288 5.288 16 N -0.413 5.413 17 H 0.442 0.558 18 C 0.200 3.800 19 C -0.067 4.067 20 N -0.465 5.465 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.276 0.724 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -8.789 14.488 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 N -0.158 5.158 4 C -0.437 4.437 5 H 0.129 0.871 6 C -0.144 4.144 7 N -0.487 5.487 8 Si 0.705 3.295 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.320 3.680 13 O -0.422 6.422 14 C -0.098 4.098 15 N -0.127 5.127 16 N -0.135 5.135 17 H 0.287 0.713 18 C -0.077 4.077 19 C -0.126 4.126 20 N -0.191 5.191 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.000 -8.167 13.728 16.738 hybrid contribution 0.123 -1.554 0.466 1.627 sum -4.876 -9.721 14.194 17.881 Atomic orbital electron populations 1.21924 0.95982 1.00537 1.01896 1.22022 0.95215 0.84881 1.01801 1.43592 1.55238 1.11885 1.05067 1.19119 1.41208 0.97031 0.86372 0.87083 1.25331 0.96044 0.98424 0.94608 1.69745 1.40619 1.39730 0.98627 0.86965 0.79937 0.83096 0.79475 1.19980 1.21291 1.18753 1.16388 0.84334 0.87211 0.80042 1.90685 1.47269 1.19613 1.84621 1.24561 1.01131 0.88724 0.95409 1.74691 1.19623 1.19954 0.98474 1.45120 1.46478 1.16768 1.05161 0.71340 1.24966 0.99698 0.85113 0.97955 1.20228 1.04671 1.03618 0.84071 1.71290 1.19855 1.28617 0.99304 0.93030 0.92986 0.92321 0.91364 0.90025 0.91340 0.89522 0.90300 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.52 37.16 0.35 -2.41 15 2 C 0.08 1.86 4.34 -4.03 -0.02 1.84 15 3 N -0.44 -11.46 2.25 -115.92 -0.26 -11.73 15 4 C -0.31 -9.05 9.40 -15.00 -0.14 -9.19 15 5 H 0.11 3.59 7.88 -52.49 -0.41 3.17 15 6 C 0.06 1.77 5.28 -17.45 -0.09 1.68 15 7 N -0.85 -24.57 13.95 55.50 0.77 -23.79 15 8 Si 0.88 21.07 24.96 -169.99 -4.24 16.82 15 9 H -0.27 -6.05 6.64 56.52 0.38 -5.68 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.26 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.54 14.28 7.59 -12.38 -0.09 14.19 15 13 O -0.54 -16.41 16.95 5.28 0.09 -16.32 15 14 C 0.18 4.04 7.36 -156.32 -1.15 2.89 15 15 N -0.29 -5.18 7.32 32.06 0.23 -4.94 15 16 N -0.41 -5.34 6.93 32.66 0.23 -5.11 15 17 H 0.44 3.39 8.96 -190.21 -1.70 1.69 15 18 C 0.20 2.79 8.25 -155.51 -1.28 1.51 15 19 C -0.07 -0.52 10.51 36.01 0.38 -0.14 15 20 N -0.46 -9.39 11.41 -8.56 -0.10 -9.49 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.05 1.00 6.72 -51.93 -0.35 0.65 15 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.07 1.55 3.09 -51.93 -0.16 1.39 15 25 H 0.08 1.69 5.68 -51.93 -0.30 1.39 15 26 H 0.28 7.32 8.31 -40.82 -0.34 6.98 15 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 15 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 15 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 248.23 15.07 3.74 3.74 Total: -1.00 -35.92 248.23 -5.78 -41.70 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.20 Total: -1.25 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -2.04 Total: 10.37 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.88 Total: -55.06 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.24 Total: 16.82 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -35.92 -5.78 -41.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.504 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds