Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46511 * 109.46571 * 2 1 4 4 C 1.36874 * 119.99429 * 264.86314 * 3 2 1 5 5 H 1.08000 * 119.99936 * 146.46349 * 4 3 2 6 6 C 1.39044 * 120.00312 * 326.45576 * 4 3 2 7 7 N 1.31367 * 119.99800 * 156.26095 * 6 4 3 8 8 Si 1.86799 * 120.00011 * 336.26844 * 6 4 3 9 9 H 1.48507 * 109.47207 * 95.31952 * 8 6 4 10 10 H 1.48496 * 109.47008 * 215.31729 * 8 6 4 11 11 H 1.48500 * 109.47235 * 335.32015 * 8 6 4 12 12 C 1.34768 * 120.00282 * 84.86977 * 3 2 1 13 13 O 1.21596 * 119.99887 * 175.20981 * 12 3 2 14 14 C 1.47750 * 120.00201 * 355.20266 * 12 3 2 15 15 N 1.31571 * 126.05149 * 0.35957 * 14 12 3 16 16 N 1.28854 * 108.68644 * 179.82604 * 15 14 12 17 17 H 0.96996 * 125.74385 * 180.14042 * 16 15 14 18 18 C 1.34590 * 108.51336 * 0.43624 * 16 15 14 19 19 C 1.50699 * 126.18178 * 179.74791 * 18 16 15 20 20 N 1.30874 * 107.63962 * 359.73556 * 18 16 15 21 21 H 1.08996 * 109.46516 * 185.89485 * 1 2 3 22 22 H 1.08996 * 109.47387 * 305.89468 * 1 2 3 23 23 H 1.08998 * 109.47151 * 65.89993 * 1 2 3 24 24 H 1.08994 * 109.47182 * 240.00246 * 2 1 3 25 25 H 1.08994 * 109.47064 * 119.99154 * 2 1 3 26 26 H 0.97005 * 119.99720 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.47418 * 270.00483 * 19 18 16 28 28 H 1.09005 * 109.46967 * 30.00053 * 19 18 16 29 29 H 1.08996 * 109.47051 * 149.99753 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.3464 1.9911 -1.1807 5 1 2.1827 3.0515 -1.3046 6 6 2.8905 1.2456 -2.2205 7 7 2.7797 1.6679 -3.4595 8 14 3.7791 -0.3566 -1.8557 9 1 2.8364 -1.4929 -2.0156 10 1 4.9144 -0.5188 -2.7991 11 1 4.2926 -0.3317 -0.4626 12 6 2.1444 2.0515 1.1624 13 8 2.6310 3.1658 1.1720 14 6 1.6914 1.4323 2.4251 15 7 1.1567 0.2370 2.5532 16 7 0.8905 0.0350 3.7976 17 1 0.4924 -0.7679 4.1688 18 6 1.2516 1.1281 4.4948 19 6 1.1111 1.3209 5.9828 20 7 1.7471 1.9934 3.6471 21 1 -0.3632 -1.0222 0.1055 22 1 -0.3634 0.6025 0.8325 23 1 -0.3633 0.4196 -0.9381 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 3.1590 1.1475 -4.1850 27 1 0.1406 1.7661 6.2015 28 1 1.1891 0.3556 6.4832 29 1 1.9022 1.9801 6.3401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700865744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = 48.717063 kcal Electronic energy + Delta-G solvation = -15645.500476 eV Core-core repulsion = 12991.700502 eV Total energy + Delta-G solvation = -2653.799974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.43096 -40.49313 -37.22979 -34.60295 -34.43389 -33.60327 -31.44312 -29.21181 -27.50809 -25.01058 -24.37047 -22.66592 -21.00845 -19.20473 -18.96234 -17.88777 -17.63224 -17.37917 -15.88622 -15.73116 -15.17529 -15.05671 -14.55378 -14.29216 -13.92050 -13.72676 -13.56684 -13.12507 -12.81678 -12.62374 -12.58340 -11.97257 -11.68447 -11.59721 -11.37271 -11.16395 -10.73361 -10.35228 -9.88981 -8.60762 -6.17247 0.36275 1.11756 1.19963 1.34518 1.41704 1.81084 2.11753 2.32425 2.35452 2.90428 3.28631 3.44265 3.86987 4.07218 4.42820 4.53384 4.66433 4.76635 4.83496 4.91560 5.00671 5.16513 5.27692 5.44507 5.48271 5.93379 6.06056 6.42973 6.77209 7.06937 7.18201 7.70785 8.55515 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043454 B = 0.009160 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.204454 B = 3056.082952 C = 3272.877595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 N -0.444 5.444 4 C -0.339 4.339 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.891 5.891 8 Si 0.945 3.055 9 H -0.232 1.232 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.527 3.473 13 O -0.601 6.601 14 C 0.146 3.854 15 N -0.273 5.273 16 N -0.384 5.384 17 H 0.469 0.531 18 C 0.224 3.776 19 C -0.065 4.065 20 N -0.516 5.516 21 H 0.096 0.904 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.286 0.714 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -12.572 17.164 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.041 4.041 3 N -0.165 5.165 4 C -0.467 4.467 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.527 5.527 8 Si 0.768 3.232 9 H -0.156 1.156 10 H -0.205 1.205 11 H -0.195 1.195 12 C 0.314 3.686 13 O -0.483 6.483 14 C -0.133 4.133 15 N -0.115 5.115 16 N -0.110 5.110 17 H 0.321 0.679 18 C -0.053 4.053 19 C -0.124 4.124 20 N -0.243 5.243 21 H 0.114 0.886 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.927 -12.012 16.408 21.181 hybrid contribution 0.304 -0.348 -0.209 0.507 sum -5.622 -12.360 16.199 21.137 Atomic orbital electron populations 1.21855 0.93707 1.03056 1.00753 1.22264 0.97151 0.82337 1.02379 1.43678 1.55389 1.13397 1.04009 1.18716 1.44058 0.95270 0.88665 0.92856 1.26059 0.95656 1.02581 0.93750 1.69823 1.41210 1.41947 0.99703 0.85911 0.79162 0.79357 0.78745 1.15633 1.20458 1.19496 1.17007 0.83245 0.86609 0.81703 1.90617 1.49571 1.22077 1.86049 1.23498 1.04915 0.90559 0.94370 1.74457 1.18132 1.17869 1.00999 1.45083 1.44762 1.17647 1.03496 0.67929 1.25917 0.96327 0.83510 0.99569 1.20604 1.05775 1.06426 0.79587 1.71197 1.22372 1.31327 0.99441 0.88550 0.93419 0.94173 0.91777 0.88101 0.90391 0.87279 0.85806 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.52 71.98 0.69 -4.22 15 2 C 0.08 3.45 4.34 86.38 0.37 3.82 15 3 N -0.44 -24.09 2.25 -638.91 -1.44 -25.53 15 4 C -0.34 -21.05 9.40 84.10 0.79 -20.26 15 5 H 0.05 3.81 7.88 -2.91 -0.02 3.79 15 6 C 0.02 1.40 5.28 84.96 0.45 1.85 15 7 N -0.89 -53.04 13.95 21.68 0.30 -52.74 15 8 Si 0.95 43.11 24.96 68.60 1.71 44.82 15 9 H -0.23 -9.07 6.64 99.48 0.66 -8.40 15 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 12 C 0.53 29.40 7.59 86.76 0.66 30.06 15 13 O -0.60 -38.92 16.95 -4.02 -0.07 -38.99 15 14 C 0.15 6.45 7.36 137.06 1.01 7.45 15 15 N -0.27 -9.07 7.32 -52.48 -0.38 -9.46 15 16 N -0.38 -8.25 6.93 -50.60 -0.35 -8.60 15 17 H 0.47 4.48 8.96 -219.80 -1.97 2.51 15 18 C 0.22 5.47 8.25 138.16 1.14 6.60 15 19 C -0.07 -0.70 10.51 71.24 0.75 0.05 15 20 N -0.52 -20.45 11.41 -180.99 -2.06 -22.52 15 21 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 22 H 0.05 1.75 6.72 -2.39 -0.02 1.74 15 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.06 2.77 3.09 -2.39 -0.01 2.76 15 25 H 0.10 3.90 5.68 -2.39 -0.01 3.89 15 26 H 0.29 15.38 8.31 -92.70 -0.77 14.61 15 27 H 0.11 0.81 8.14 -2.39 -0.02 0.79 15 28 H 0.12 0.29 8.14 -2.38 -0.02 0.27 15 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 15 Total: -1.00 -86.62 248.23 2.74 -83.88 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.82 Total: 3.78 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 5.85 Total: 25.36 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -3.94 Total: -118.85 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.07 Total: -38.99 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.71 Total: 44.82 kcal Total: -86.62 2.74 -83.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700865744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.599 kcal (2) G-P(sol) polarization free energy of solvation -86.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds