Wall clock time and date at job start Mon Mar 30 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47157 * 2 1 4 4 C 1.36684 * 120.00250 * 267.79330 * 3 2 1 5 5 H 1.07991 * 119.99922 * 187.78238 * 4 3 2 6 6 C 1.39162 * 119.99801 * 7.78097 * 4 3 2 7 7 N 1.31290 * 120.00151 * 33.47551 * 6 4 3 8 8 Si 1.86801 * 119.99933 * 213.47009 * 6 4 3 9 9 H 1.48500 * 109.47047 * 60.00397 * 8 6 4 10 10 H 1.48504 * 109.47002 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47202 * 300.00194 * 8 6 4 12 12 C 1.34779 * 119.99777 * 87.78589 * 3 2 1 13 13 O 1.21647 * 119.99467 * 183.71175 * 12 3 2 14 14 C 1.47290 * 120.00107 * 3.70967 * 12 3 2 15 15 O 1.34680 * 126.95570 * 354.87865 * 14 12 3 16 16 N 1.20889 * 111.44335 * 179.97438 * 15 14 12 17 17 C 1.30168 * 112.01761 * 359.97438 * 16 15 14 18 18 C 1.36989 * 126.95704 * 174.87328 * 14 12 3 19 19 C 1.50699 * 128.08307 * 0.03809 * 18 14 12 20 20 H 1.09000 * 109.47418 * 299.99512 * 1 2 3 21 21 H 1.08997 * 109.46999 * 60.00362 * 1 2 3 22 22 H 1.09003 * 109.46583 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47418 * 240.00488 * 2 1 3 24 24 H 1.09001 * 109.47699 * 119.99808 * 2 1 3 25 25 H 0.97004 * 120.00287 * 180.02562 * 7 6 4 26 26 H 1.07996 * 126.69421 * 179.97438 * 17 16 15 27 27 H 1.09006 * 109.46769 * 89.99700 * 19 18 14 28 28 H 1.08995 * 109.47315 * 210.00030 * 19 18 14 29 29 H 1.08996 * 109.46917 * 330.00388 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2891 2.0105 -1.1828 5 1 2.7661 2.9793 -1.1822 6 6 1.9502 1.4025 -2.3878 7 7 0.8776 0.6492 -2.4643 8 14 3.0213 1.6582 -3.8967 9 1 4.3938 1.1638 -3.6190 10 1 2.4476 0.9095 -5.0437 11 1 3.0738 3.1051 -4.2271 12 6 2.2004 2.0316 1.1664 13 8 2.5410 3.1994 1.1648 14 6 1.9871 1.3284 2.4428 15 8 1.5206 0.0759 2.6091 16 7 1.4572 -0.2203 3.7795 17 6 1.8563 0.7494 4.5506 18 6 2.2229 1.8158 3.7012 19 6 2.7510 3.1731 4.0883 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.6416 0.2251 -3.3041 26 1 1.8974 0.7406 5.6298 27 1 1.9174 3.8628 4.2213 28 1 3.3090 3.0933 5.0212 29 1 3.4083 3.5449 3.3024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705986499.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:12 Heat of formation + Delta-G solvation = 41.926375 kcal Electronic energy + Delta-G solvation = -15838.851785 eV Core-core repulsion = 13152.464594 eV Total energy + Delta-G solvation = -2686.387191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.29768 -38.52489 -35.49520 -33.92237 -32.30567 -31.33380 -29.52934 -27.88039 -25.34904 -23.04982 -22.11945 -21.61588 -19.65383 -17.42160 -17.12271 -16.55695 -15.43746 -14.83242 -14.35529 -13.86090 -13.55331 -12.97673 -12.84777 -12.78366 -12.41462 -12.10602 -11.97667 -11.44243 -11.17573 -10.91142 -10.70384 -10.52912 -10.30747 -9.98815 -9.65997 -9.10337 -8.77006 -8.64893 -8.03080 -6.66178 -3.92519 1.58114 2.62540 3.07694 3.15044 3.19394 3.56251 3.97514 4.03314 4.64866 4.71512 4.88954 5.20598 5.47231 5.70429 5.85741 6.06367 6.16861 6.26560 6.38798 6.51153 6.58502 6.73307 6.83706 7.07559 7.22121 7.72020 7.85829 8.26168 8.68273 8.93731 9.14760 9.76112 10.29034 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.041365 B = 0.009474 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.739913 B = 2954.689840 C = 3453.339205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 N -0.399 5.399 4 C -0.314 4.314 5 H 0.115 0.885 6 C 0.044 3.956 7 N -0.827 5.827 8 Si 0.920 3.080 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.484 3.516 13 O -0.575 6.575 14 C -0.034 4.034 15 O 0.103 5.897 16 N -0.379 5.379 17 C -0.016 4.016 18 C -0.177 4.177 19 C -0.070 4.070 20 H 0.024 0.976 21 H 0.108 0.892 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.276 0.724 26 H 0.186 0.814 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -1.708 5.669 6.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 N -0.114 5.114 4 C -0.441 4.441 5 H 0.132 0.868 6 C -0.165 4.165 7 N -0.462 5.462 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.273 3.727 13 O -0.463 6.463 14 C -0.100 4.100 15 O 0.038 5.962 16 N -0.085 5.085 17 C -0.194 4.194 18 C -0.184 4.184 19 C -0.127 4.127 20 H 0.043 0.957 21 H 0.126 0.874 22 H 0.059 0.941 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.203 0.797 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.721 -2.529 5.700 6.277 hybrid contribution 0.518 0.540 -0.467 0.882 sum 1.240 -1.989 5.233 5.733 Atomic orbital electron populations 1.22255 0.95464 1.00441 1.03098 1.21621 0.95724 0.82829 1.00960 1.43850 1.51200 1.11439 1.04912 1.19793 1.37230 1.05881 0.81238 0.86772 1.25390 0.95149 0.96399 0.99557 1.70076 1.18481 1.29707 1.27930 0.86103 0.80744 0.79193 0.79518 1.19501 1.20729 1.19329 1.16161 0.89975 0.86132 0.80463 1.90645 1.56092 1.14880 1.84635 1.24778 1.01795 0.85208 0.98214 1.85174 1.62353 1.28309 1.20341 1.73650 1.19542 1.24762 0.90507 1.24731 1.02678 0.90335 1.01638 1.21346 1.06886 0.99392 0.90751 1.20084 1.00885 0.90255 1.01484 0.95673 0.87407 0.94103 0.89525 0.92510 0.91341 0.79725 0.91414 0.92179 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.45 37.16 0.35 -3.00 15 2 C 0.11 2.53 4.92 -4.04 -0.02 2.51 15 3 N -0.40 -10.09 2.62 -116.09 -0.30 -10.40 15 4 C -0.31 -8.26 9.34 -15.05 -0.14 -8.40 15 5 H 0.11 3.14 7.38 -52.49 -0.39 2.75 15 6 C 0.04 1.06 4.64 -17.44 -0.08 0.98 15 7 N -0.83 -19.84 8.75 55.51 0.49 -19.36 15 8 Si 0.92 18.88 29.66 -169.99 -5.04 13.84 15 9 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 12 C 0.48 12.17 7.61 -12.58 -0.10 12.07 15 13 O -0.58 -15.64 14.78 5.24 0.08 -15.56 15 14 C -0.03 -0.74 6.91 -36.36 -0.25 -1.00 15 15 O 0.10 2.14 7.27 15.44 0.11 2.25 15 16 N -0.38 -7.26 12.04 30.47 0.37 -6.89 15 17 C -0.02 -0.27 12.14 -17.14 -0.21 -0.48 15 18 C -0.18 -3.34 6.37 -103.96 -0.66 -4.00 15 19 C -0.07 -1.13 9.92 36.01 0.36 -0.77 15 20 H 0.02 0.54 7.74 -51.93 -0.40 0.13 15 21 H 0.11 2.57 5.69 -51.93 -0.30 2.28 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.09 2.00 6.37 -51.93 -0.33 1.67 15 24 H 0.06 1.21 5.08 -51.93 -0.26 0.95 15 25 H 0.28 6.18 8.31 -40.82 -0.34 5.84 15 26 H 0.19 2.27 8.06 -52.49 -0.42 1.85 15 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 29 H 0.09 1.59 6.84 -51.93 -0.36 1.23 15 LS Contribution 247.63 15.07 3.73 3.73 Total: -1.00 -27.84 247.63 -4.18 -32.02 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -2.86 Total: 2.44 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.75 Total: -2.08 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.55 Total: -36.65 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.19 Total: -13.31 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.04 Total: 13.84 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.84 -4.18 -32.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705986499.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.944 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds