Wall clock time and date at job start Mon Mar 30 2020 03:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39942 * 125.74694 * 2 1 4 4 C 1.30444 * 108.90981 * 180.27538 * 3 2 1 5 5 C 1.41316 * 108.02822 * 359.74116 * 4 3 2 6 6 C 1.47364 * 126.42151 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00119 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99616 * 0.04919 * 6 5 4 9 9 C 1.36981 * 119.99430 * 179.97438 * 8 6 5 10 10 H 1.07998 * 120.00532 * 0.02562 * 9 8 6 11 11 C 1.38980 * 119.99591 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99882 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00048 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47113 * 59.99985 * 13 11 9 15 15 H 1.48492 * 109.47368 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46748 * 300.00250 * 13 11 9 17 17 C 1.34283 * 125.75636 * 179.81969 * 2 1 3 18 18 C 1.50701 * 126.29469 * 359.97438 * 17 2 1 19 19 N 1.46901 * 109.46921 * 89.68808 * 18 17 2 20 20 H 1.08999 * 109.47350 * 270.17648 * 1 2 3 21 21 H 1.08995 * 109.47342 * 30.18099 * 1 2 3 22 22 H 1.09007 * 109.46733 * 150.17634 * 1 2 3 23 23 H 1.08002 * 125.98259 * 179.78337 * 4 3 2 24 24 H 0.96998 * 120.00251 * 359.97438 * 8 6 5 25 25 H 0.97009 * 119.99637 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.47060 * 209.68989 * 18 17 2 27 27 H 1.09001 * 109.47380 * 329.69077 * 18 17 2 28 28 H 1.00908 * 110.99847 * 179.97438 * 19 18 17 29 29 H 1.00899 * 111.00283 * 303.95218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1358 0.0000 4 6 3.5311 0.7580 -0.0059 5 6 3.5605 -0.6549 -0.0039 6 6 4.7642 -1.5050 -0.0095 7 8 4.6533 -2.7161 -0.0075 8 7 5.9879 -0.9402 -0.0162 9 6 7.1068 -1.7304 -0.0208 10 1 7.0084 -2.8059 -0.0194 11 6 8.3687 -1.1481 -0.0284 12 7 8.4884 0.1605 -0.0306 13 14 9.8946 -2.2256 -0.0339 14 1 9.8890 -3.0854 -1.2446 15 1 11.1065 -1.3675 -0.0411 16 1 9.9011 -3.0806 1.1803 17 6 2.2497 -1.0897 0.0034 18 6 1.7853 -2.5234 0.0085 19 7 1.6267 -2.9916 -1.3749 20 1 -0.3634 0.0032 1.0276 21 1 -0.3634 0.8883 -0.5166 22 1 -0.3633 -0.8916 -0.5111 23 1 4.3915 1.4106 -0.0108 24 1 6.0763 0.0257 -0.0179 25 1 9.3692 0.5670 -0.0354 26 1 2.5228 -3.1424 0.5193 27 1 0.8294 -2.5939 0.5277 28 1 1.3161 -3.9514 -1.3984 29 1 0.9962 -2.3945 -1.8887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721412176.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:26 Heat of formation + Delta-G solvation = 41.222050 kcal Electronic energy + Delta-G solvation = -15129.200807 eV Core-core repulsion = 12475.075825 eV Total energy + Delta-G solvation = -2654.124982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93461 -37.58798 -34.81704 -33.74721 -32.87420 -31.05534 -29.66236 -27.04469 -25.10645 -24.28857 -21.67219 -19.98300 -18.80337 -17.70103 -16.71774 -15.89860 -15.28779 -15.02376 -14.50461 -14.18198 -13.98847 -13.79628 -13.23842 -12.78745 -12.41122 -12.33093 -12.29032 -11.91491 -11.43295 -11.00255 -10.39040 -10.37324 -10.11596 -9.42648 -9.11254 -8.56742 -8.23524 -8.04655 -7.83747 -6.34151 -3.69897 1.98097 2.66391 2.81640 3.31032 3.31477 3.36323 4.25333 4.53399 4.58531 4.74585 4.92214 5.06770 5.09121 5.25912 5.33690 5.49212 5.52769 5.93336 5.96275 6.22083 6.68927 6.95415 7.10243 7.30278 7.52047 7.62953 7.96554 8.18214 8.73840 9.27547 9.67371 10.21797 10.84032 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.044478 B = 0.007206 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.377245 B = 3884.819451 C = 4426.257683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.374 5.374 3 N -0.306 5.306 4 C 0.070 3.930 5 C -0.230 4.230 6 C 0.515 3.485 7 O -0.590 6.590 8 N -0.556 5.556 9 C -0.292 4.292 10 H 0.104 0.896 11 C 0.020 3.980 12 N -0.900 5.900 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.119 3.881 18 C 0.132 3.868 19 N -0.829 5.829 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.189 0.811 24 H 0.392 0.608 25 H 0.272 0.728 26 H 0.121 0.879 27 H 0.026 0.974 28 H 0.346 0.654 29 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.043 -0.194 0.040 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.157 5.157 3 N -0.126 5.126 4 C -0.117 4.117 5 C -0.245 4.245 6 C 0.302 3.698 7 O -0.476 6.476 8 N -0.190 5.190 9 C -0.422 4.422 10 H 0.122 0.878 11 C -0.181 4.181 12 N -0.542 5.542 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.011 4.011 18 C 0.000 4.000 19 N -0.359 5.359 20 H 0.090 0.910 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.206 0.794 24 H 0.225 0.775 25 H 0.082 0.918 26 H 0.139 0.861 27 H 0.044 0.956 28 H 0.160 0.840 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.077 0.249 -0.015 14.080 hybrid contribution 0.347 -0.480 0.225 0.633 sum -13.731 -0.230 0.210 13.734 Atomic orbital electron populations 1.21751 0.75072 1.03953 1.03066 1.48168 1.06181 1.03737 1.57571 1.77041 1.02196 1.07319 1.26094 1.24138 0.94929 0.94764 0.97839 1.20502 0.93899 0.93107 1.17005 1.16794 0.81989 0.87019 0.83982 1.90552 1.86189 1.13853 1.57027 1.41672 1.04093 1.09398 1.63875 1.19680 0.83091 0.92540 1.46865 0.87819 1.25266 0.99235 0.96077 0.97537 1.69608 1.25106 1.09046 1.50404 0.85911 0.80017 0.79217 0.79029 1.19909 1.21052 1.19954 1.21164 0.90441 0.89716 0.99813 1.20392 0.99496 0.89422 0.90658 1.58389 1.57638 1.06687 1.13215 0.90973 0.89236 0.90287 0.79391 0.77495 0.91840 0.86147 0.95640 0.84004 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.06 59.85 0.66 1.68 15 2 N -0.37 -5.87 3.98 -63.32 -0.25 -6.13 15 3 N -0.31 -5.49 12.50 30.87 0.39 -5.10 15 4 C 0.07 1.34 11.50 -16.97 -0.20 1.14 15 5 C -0.23 -4.89 6.13 -105.06 -0.64 -5.53 15 6 C 0.52 13.11 7.76 -12.55 -0.10 13.01 15 7 O -0.59 -16.34 14.41 5.26 0.08 -16.26 15 8 N -0.56 -14.75 5.27 -11.97 -0.06 -14.81 15 9 C -0.29 -8.31 9.68 -14.98 -0.14 -8.46 15 10 H 0.10 3.06 7.15 -52.49 -0.38 2.68 15 11 C 0.02 0.56 5.50 -17.46 -0.10 0.46 15 12 N -0.90 -24.86 13.05 55.50 0.72 -24.14 15 13 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 15 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 15 H -0.29 -6.38 7.11 56.52 0.40 -5.97 15 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 17 C 0.12 2.14 6.52 -81.57 -0.53 1.61 15 18 C 0.13 2.03 6.23 -4.97 -0.03 2.00 15 19 N -0.83 -11.68 9.61 -11.41 -0.11 -11.79 15 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.08 0.59 7.63 -51.92 -0.40 0.20 15 23 H 0.19 3.24 7.50 -52.49 -0.39 2.84 15 24 H 0.39 9.93 6.85 -40.82 -0.28 9.65 15 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 26 H 0.12 2.22 6.50 -51.93 -0.34 1.88 15 27 H 0.03 0.30 7.71 -51.93 -0.40 -0.10 15 28 H 0.35 3.93 9.08 -39.29 -0.36 3.57 15 29 H 0.33 3.94 8.99 -39.29 -0.35 3.59 15 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -33.79 260.10 -4.29 -38.09 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -2.87 Total: 13.99 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.08 Total: 5.91 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.69 Total: -61.96 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.08 Total: -16.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.79 -4.29 -38.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721412176.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.308 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds