Wall clock time and date at job start Mon Mar 30 2020 03:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39942 * 125.74694 * 2 1 4 4 C 1.30444 * 108.90981 * 180.27538 * 3 2 1 5 5 C 1.41316 * 108.02822 * 359.74116 * 4 3 2 6 6 C 1.47364 * 126.42151 * 179.97438 * 5 4 3 7 7 O 1.21620 * 120.00119 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99616 * 0.04919 * 6 5 4 9 9 C 1.36981 * 119.99430 * 179.97438 * 8 6 5 10 10 H 1.07998 * 120.00532 * 0.02562 * 9 8 6 11 11 C 1.38980 * 119.99591 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99882 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00048 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47113 * 59.99985 * 13 11 9 15 15 H 1.48492 * 109.47368 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46748 * 300.00250 * 13 11 9 17 17 C 1.34283 * 125.75636 * 179.81969 * 2 1 3 18 18 C 1.50701 * 126.29469 * 359.97438 * 17 2 1 19 19 N 1.46901 * 109.46921 * 89.68808 * 18 17 2 20 20 H 1.08999 * 109.47350 * 270.17648 * 1 2 3 21 21 H 1.08995 * 109.47342 * 30.18099 * 1 2 3 22 22 H 1.09007 * 109.46733 * 150.17634 * 1 2 3 23 23 H 1.08002 * 125.98259 * 179.78337 * 4 3 2 24 24 H 0.96998 * 120.00251 * 359.97438 * 8 6 5 25 25 H 0.97009 * 119.99637 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.47060 * 209.68989 * 18 17 2 27 27 H 1.09001 * 109.47380 * 329.69077 * 18 17 2 28 28 H 1.00908 * 110.99847 * 179.97438 * 19 18 17 29 29 H 1.00899 * 111.00283 * 303.95218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1358 0.0000 4 6 3.5311 0.7580 -0.0059 5 6 3.5605 -0.6549 -0.0039 6 6 4.7642 -1.5050 -0.0095 7 8 4.6533 -2.7161 -0.0075 8 7 5.9879 -0.9402 -0.0162 9 6 7.1068 -1.7304 -0.0208 10 1 7.0084 -2.8059 -0.0194 11 6 8.3687 -1.1481 -0.0284 12 7 8.4884 0.1605 -0.0306 13 14 9.8946 -2.2256 -0.0339 14 1 9.8890 -3.0854 -1.2446 15 1 11.1065 -1.3675 -0.0411 16 1 9.9011 -3.0806 1.1803 17 6 2.2497 -1.0897 0.0034 18 6 1.7853 -2.5234 0.0085 19 7 1.6267 -2.9916 -1.3749 20 1 -0.3634 0.0032 1.0276 21 1 -0.3634 0.8883 -0.5166 22 1 -0.3633 -0.8916 -0.5111 23 1 4.3915 1.4106 -0.0108 24 1 6.0763 0.0257 -0.0179 25 1 9.3692 0.5670 -0.0354 26 1 2.5228 -3.1424 0.5193 27 1 0.8294 -2.5939 0.5277 28 1 1.3161 -3.9514 -1.3984 29 1 0.9962 -2.3945 -1.8887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721412176.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:26 Heat of formation + Delta-G solvation = 13.027048 kcal Electronic energy + Delta-G solvation = -15130.423434 eV Core-core repulsion = 12475.075825 eV Total energy + Delta-G solvation = -2655.347609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.35070 -39.55436 -36.18689 -35.65872 -34.11561 -33.08940 -31.07913 -28.37779 -26.69516 -25.82437 -23.29632 -21.41249 -20.54382 -19.62686 -18.28066 -17.19616 -16.71866 -16.43853 -16.29598 -15.69151 -15.36052 -15.25279 -15.06418 -14.42268 -13.67656 -13.53425 -13.46981 -13.38911 -13.22728 -12.87190 -12.36261 -12.08303 -11.80794 -11.45001 -10.42425 -10.28346 -9.96026 -9.60329 -9.49744 -8.41163 -5.86183 0.56494 1.22177 1.44218 1.48297 1.51966 1.57035 2.35414 2.63403 3.28734 3.40829 3.50931 3.73242 3.84055 3.97174 4.24657 4.37145 4.46842 4.61988 4.64188 4.74843 5.10442 5.41954 5.48725 5.92523 6.08019 6.20495 6.54314 6.61970 6.68594 7.18257 7.64251 8.20569 8.77057 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.044478 B = 0.007206 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.377245 B = 3884.819451 C = 4426.257683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.358 5.358 3 N -0.311 5.311 4 C 0.067 3.933 5 C -0.280 4.280 6 C 0.516 3.484 7 O -0.621 6.621 8 N -0.568 5.568 9 C -0.328 4.328 10 H 0.083 0.917 11 C -0.016 4.016 12 N -0.922 5.922 13 Si 0.996 3.004 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.137 3.863 18 C 0.136 3.864 19 N -0.845 5.845 20 H 0.095 0.905 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.195 0.805 24 H 0.394 0.606 25 H 0.277 0.723 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.362 0.638 29 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 -0.168 -0.046 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.139 5.139 3 N -0.132 5.132 4 C -0.119 4.119 5 C -0.296 4.296 6 C 0.305 3.695 7 O -0.508 6.508 8 N -0.203 5.203 9 C -0.458 4.458 10 H 0.101 0.899 11 C -0.215 4.215 12 N -0.563 5.563 13 Si 0.819 3.181 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.003 3.997 18 C 0.004 3.996 19 N -0.380 5.380 20 H 0.114 0.886 21 H 0.124 0.876 22 H 0.128 0.872 23 H 0.212 0.788 24 H 0.227 0.773 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.833 0.311 -0.104 15.836 hybrid contribution 0.643 -0.482 0.248 0.841 sum -15.189 -0.171 0.145 15.191 Atomic orbital electron populations 1.22355 0.71196 1.06374 1.05371 1.48610 1.08104 1.02332 1.54822 1.77005 1.01776 1.08290 1.26150 1.24197 0.95798 0.93994 0.97888 1.20275 0.93708 0.93793 1.21782 1.17419 0.82836 0.87184 0.82066 1.90511 1.86918 1.15381 1.58023 1.41698 1.04289 1.09311 1.65042 1.19682 0.84638 0.92014 1.49466 0.89912 1.26084 1.01538 0.97482 0.96426 1.69682 1.26077 1.10170 1.50344 0.84948 0.76479 0.77653 0.78994 1.19658 1.19571 1.19554 1.21500 0.89753 0.91396 0.97046 1.20303 1.00626 0.87007 0.91681 1.58248 1.58894 1.08132 1.12716 0.88650 0.87631 0.87238 0.78820 0.77254 0.91329 0.89618 0.90894 0.82220 0.84174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 11.06 127.77 1.41 2.72 15 2 N -0.36 -10.22 3.98 -354.24 -1.41 -11.63 15 3 N -0.31 -10.66 12.50 -56.26 -0.70 -11.36 15 4 C 0.07 2.57 11.50 85.66 0.99 3.55 15 5 C -0.28 -12.01 6.13 -20.15 -0.12 -12.14 15 6 C 0.52 27.21 7.76 86.65 0.67 27.89 15 7 O -0.62 -35.63 14.41 -4.10 -0.06 -35.69 15 8 N -0.57 -31.40 5.27 -310.02 -1.64 -33.03 15 9 C -0.33 -19.39 9.68 84.07 0.81 -18.57 15 10 H 0.08 5.12 7.15 -2.91 -0.02 5.10 15 11 C -0.02 -0.87 5.50 84.93 0.47 -0.41 15 12 N -0.92 -51.43 13.05 21.67 0.28 -51.15 15 13 Si 1.00 44.02 29.55 68.60 2.03 46.05 15 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 15 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 17 C 0.14 4.70 6.52 42.15 0.27 4.97 15 18 C 0.14 3.90 6.23 85.56 0.53 4.44 15 19 N -0.85 -22.06 9.61 -190.00 -1.83 -23.88 15 20 H 0.10 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.11 1.35 8.14 -2.39 -0.02 1.33 15 22 H 0.11 1.05 7.63 -2.38 -0.02 1.03 15 23 H 0.20 6.85 7.50 -2.91 -0.02 6.82 15 24 H 0.39 20.84 6.85 -92.71 -0.63 20.20 15 25 H 0.28 14.46 8.31 -92.70 -0.77 13.69 15 26 H 0.09 3.15 6.50 -2.39 -0.02 3.13 15 27 H 0.07 1.42 7.71 -2.39 -0.02 1.40 15 28 H 0.36 7.43 9.08 -89.69 -0.81 6.61 15 29 H 0.34 7.17 8.99 -89.69 -0.81 6.36 15 Total: -1.00 -74.87 260.10 0.68 -74.19 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -1.04 Total: 34.06 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.04 Total: 12.45 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -5.29 Total: -131.06 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.06 Total: -35.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -74.87 0.68 -74.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721412176.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.221 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds