Wall clock time and date at job start Mon Mar 30 2020 03:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99803 * 2 1 4 4 C 1.50691 * 109.47309 * 180.02562 * 3 2 1 5 5 C 1.35164 * 125.61180 * 90.00068 * 4 3 2 6 6 C 1.40334 * 107.12716 * 179.97438 * 5 4 3 7 7 C 1.36656 * 106.70413 * 0.02562 * 6 5 4 8 8 C 1.46516 * 125.99718 * 180.02562 * 7 6 5 9 9 O 1.21749 * 119.99592 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00269 * 179.97438 * 8 7 6 11 11 C 1.36855 * 119.99830 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00101 * 359.72751 * 11 10 8 13 13 C 1.39023 * 119.99689 * 179.97438 * 11 10 8 14 14 N 1.31384 * 120.00433 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99960 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47055 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47125 * 120.00479 * 15 13 11 18 18 H 1.48500 * 109.47415 * 240.00272 * 15 13 11 19 19 O 1.33972 * 125.61214 * 270.31378 * 4 3 2 20 20 H 1.09002 * 109.46742 * 299.99176 * 1 2 3 21 21 H 1.08991 * 109.47892 * 59.99825 * 1 2 3 22 22 H 1.09007 * 109.46714 * 180.02562 * 1 2 3 23 23 H 1.00897 * 111.00557 * 123.95326 * 2 1 3 24 24 H 1.09002 * 109.47158 * 60.00361 * 3 2 1 25 25 H 1.09002 * 109.47172 * 300.00822 * 3 2 1 26 26 H 1.08004 * 126.43455 * 359.96468 * 5 4 3 27 27 H 1.08004 * 126.64534 * 179.97438 * 6 5 4 28 28 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 29 29 H 0.97005 * 120.00355 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3314 -0.0006 5 6 4.2881 1.3106 -1.0998 6 6 5.6188 1.2757 -0.6555 7 6 5.5769 1.2764 0.7105 8 6 6.7349 1.2464 1.6075 9 8 7.8614 1.2171 1.1465 10 7 6.5532 1.2512 2.9430 11 6 7.6349 1.2226 3.7808 12 1 8.6340 1.1918 3.3719 13 6 7.4475 1.2281 5.1583 14 7 6.2319 1.2601 5.6559 15 14 8.9239 1.1884 6.3020 16 1 10.1721 1.1549 5.4980 17 1 8.9195 2.4016 7.1583 18 1 8.8540 -0.0225 7.1589 19 8 4.2819 1.3045 1.0882 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8307 -0.5261 0.7813 24 1 1.6459 1.8948 0.8900 25 1 1.6458 1.8949 -0.8899 26 1 3.9548 1.3191 -2.1271 27 1 6.5043 1.2520 -1.2733 28 1 5.6558 1.2748 3.3103 29 1 6.1011 1.2636 6.6170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724851481.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:41 Heat of formation + Delta-G solvation = -48.352811 kcal Electronic energy + Delta-G solvation = -14706.292534 eV Core-core repulsion = 12015.990543 eV Total energy + Delta-G solvation = -2690.301990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.59406 -40.00050 -37.11101 -36.25988 -34.05888 -33.42377 -31.62226 -28.38741 -26.73715 -24.64091 -23.08468 -22.41519 -21.06724 -20.25810 -18.79568 -17.37981 -17.36337 -16.81648 -16.25989 -15.89993 -15.52989 -15.10497 -15.00336 -14.22544 -14.06000 -13.85977 -13.58759 -13.43765 -13.00582 -12.81277 -12.57579 -12.52926 -12.12121 -11.69511 -10.94346 -10.89936 -10.24716 -9.64365 -9.39320 -8.63132 -6.09896 0.13385 1.32651 1.39823 1.48855 1.55736 1.76402 2.23532 2.28288 3.01101 3.14105 3.37059 3.68032 4.04674 4.12319 4.34384 4.45958 4.59508 4.68472 4.72279 4.93839 5.02270 5.07125 5.27828 5.51515 5.74461 5.88292 6.02148 6.23412 6.39487 6.90021 7.28296 7.80529 8.54023 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.006323 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.663933 B = 4427.200892 C = 5103.721859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.703 5.703 3 C 0.145 3.855 4 C -0.009 4.009 5 C -0.187 4.187 6 C -0.149 4.149 7 C -0.068 4.068 8 C 0.498 3.502 9 O -0.618 6.618 10 N -0.541 5.541 11 C -0.341 4.341 12 H 0.091 0.909 13 C -0.008 4.008 14 N -0.908 5.908 15 Si 1.006 2.994 16 H -0.268 1.268 17 H -0.266 1.266 18 H -0.266 1.266 19 O -0.181 6.181 20 H 0.029 0.971 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.343 0.657 24 H 0.054 0.946 25 H 0.132 0.868 26 H 0.187 0.813 27 H 0.158 0.842 28 H 0.398 0.602 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -0.169 -7.914 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.334 5.334 3 C 0.016 3.984 4 C -0.061 4.061 5 C -0.206 4.206 6 C -0.170 4.170 7 C -0.121 4.121 8 C 0.287 3.713 9 O -0.508 6.508 10 N -0.173 5.173 11 C -0.470 4.470 12 H 0.109 0.891 13 C -0.210 4.210 14 N -0.546 5.546 15 Si 0.828 3.172 16 H -0.192 1.192 17 H -0.191 1.191 18 H -0.191 1.191 19 O -0.077 6.077 20 H 0.047 0.953 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.160 0.840 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.205 0.795 27 H 0.176 0.824 28 H 0.232 0.768 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.648 -0.252 -8.340 14.328 hybrid contribution 0.230 0.218 1.607 1.638 sum -11.418 -0.034 -6.733 13.256 Atomic orbital electron populations 1.22298 0.85262 1.03167 1.01425 1.60512 1.09643 1.12634 1.50642 1.20555 0.82104 0.91558 1.04162 1.23250 0.94717 1.04289 0.83814 1.21784 0.90511 1.07442 1.00890 1.22058 0.99817 1.03024 0.92134 1.22192 0.81458 1.13058 0.95358 1.16686 0.86482 0.86102 0.82079 1.90643 1.23611 1.60220 1.76328 1.41921 1.10088 1.60892 1.04403 1.19942 0.88575 1.50342 0.88163 0.89066 1.26346 1.01382 0.94951 0.98347 1.69688 1.22435 1.47391 1.15110 0.84691 0.76714 0.78715 0.77110 1.19194 1.19066 1.19055 1.84019 1.16084 1.71211 1.36404 0.95280 0.90127 0.90246 0.83982 0.92831 0.85066 0.79533 0.82435 0.76770 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.75 15 2 N -0.70 -14.33 6.84 -541.23 -3.70 -18.04 15 3 C 0.14 3.03 6.21 85.55 0.53 3.56 15 4 C -0.01 -0.26 6.83 24.97 0.17 -0.09 15 5 C -0.19 -5.46 10.77 22.07 0.24 -5.22 15 6 C -0.15 -5.59 10.62 22.41 0.24 -5.35 15 7 C -0.07 -3.05 7.13 24.06 0.17 -2.88 15 8 C 0.50 27.05 7.73 86.40 0.67 27.72 15 9 O -0.62 -37.03 16.44 -4.50 -0.07 -37.10 15 10 N -0.54 -30.29 5.27 -310.76 -1.64 -31.93 15 11 C -0.34 -19.88 9.68 84.10 0.81 -19.07 15 12 H 0.09 5.55 7.15 -2.91 -0.02 5.53 15 13 C -0.01 -0.45 5.50 84.95 0.47 0.02 15 14 N -0.91 -49.26 13.05 21.68 0.28 -48.98 15 15 Si 1.01 42.18 29.55 68.60 2.03 44.21 15 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 18 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 19 O -0.18 -7.17 10.40 -5.51 -0.06 -7.23 15 20 H 0.03 0.39 8.14 -2.39 -0.02 0.37 15 21 H 0.08 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.08 1.00 8.14 -2.38 -0.02 0.98 15 23 H 0.34 7.71 8.81 -89.70 -0.79 6.92 15 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.13 2.00 8.14 -2.39 -0.02 1.98 15 26 H 0.19 3.91 8.06 -2.91 -0.02 3.89 15 27 H 0.16 5.65 8.06 -2.91 -0.02 5.63 15 28 H 0.40 21.72 7.65 -92.71 -0.71 21.01 15 29 H 0.29 14.17 8.31 -92.70 -0.77 13.40 15 Total: -1.00 -68.37 266.78 1.19 -67.19 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.31 Total: 31.43 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 4.66 Total: 0.45 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -5.06 Total: -98.94 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.13 Total: -44.33 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -68.37 1.19 -67.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724851481.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.834 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds