Wall clock time and date at job start Mon Mar 30 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47120 * 2 1 4 4 C 1.50694 * 109.47226 * 239.99350 * 2 1 3 5 5 H 1.07995 * 120.00461 * 239.99919 * 4 2 1 6 6 C 1.37883 * 119.99964 * 60.00305 * 4 2 1 7 7 N 1.31516 * 119.99739 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00119 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47274 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47106 * 119.99990 * 8 6 4 11 11 H 1.48492 * 109.47434 * 240.00037 * 8 6 4 12 12 O 1.45201 * 109.47086 * 119.99625 * 2 1 3 13 13 C 1.34822 * 116.99797 * 270.00338 * 12 2 1 14 14 O 1.21553 * 120.00202 * 359.97438 * 13 12 2 15 15 C 1.47010 * 119.99823 * 179.72406 * 13 12 2 16 16 C 1.38485 * 126.89335 * 179.97438 * 15 13 12 17 17 C 1.39634 * 105.35374 * 179.89346 * 16 15 13 18 18 N 1.30876 * 107.88266 * 0.37269 * 17 16 15 19 19 N 1.28439 * 110.94191 * 359.76349 * 18 17 16 20 20 C 1.46505 * 125.19701 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47370 * 300.00921 * 1 2 3 22 22 H 1.09004 * 109.46957 * 60.00037 * 1 2 3 23 23 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99775 * 180.02562 * 7 6 4 25 25 H 1.07997 * 127.32149 * 0.02562 * 16 15 13 26 26 H 1.08007 * 126.06281 * 180.11080 * 17 16 15 27 27 H 1.09001 * 109.46860 * 269.97486 * 20 19 18 28 28 H 1.09005 * 109.47084 * 29.97358 * 20 19 18 29 29 H 1.08996 * 109.47269 * 149.97149 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1862 -4.8160 12 8 2.0140 -0.6844 1.1856 13 6 2.2179 0.0675 2.2860 14 8 1.9976 1.2625 2.2549 15 6 2.7015 -0.5589 3.5249 16 6 2.9586 0.0726 4.7303 17 6 3.3910 -0.9374 5.5920 18 7 3.3893 -2.0632 4.9245 19 7 2.9931 -1.8801 3.7166 20 6 2.8718 -2.9277 2.6997 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1606 -3.4845 25 1 2.8462 1.1227 4.9564 26 1 3.6801 -0.8113 6.6250 27 1 3.8118 -3.0159 2.1550 28 1 2.6410 -3.8775 3.1822 29 1 2.0724 -2.6693 2.0053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733708336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:24 Heat of formation + Delta-G solvation = -11.358590 kcal Electronic energy + Delta-G solvation = -15276.467761 eV Core-core repulsion = 12587.769961 eV Total energy + Delta-G solvation = -2688.697801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.33438 -39.31342 -35.86526 -33.52288 -33.04961 -30.89641 -29.52315 -26.96548 -25.41928 -23.93125 -21.39317 -21.01001 -19.59993 -17.76354 -16.70740 -16.16722 -15.99599 -15.17699 -14.77339 -14.58709 -13.76000 -13.56965 -12.93314 -12.69788 -12.48442 -12.22944 -11.95446 -11.32939 -11.14978 -10.91667 -10.78809 -10.45226 -10.36134 -9.94416 -9.68661 -9.08078 -9.01113 -8.90647 -8.57987 -6.26783 -4.34559 1.39542 2.63397 2.71433 3.18164 3.24085 3.28251 3.44231 3.45347 4.25741 4.64600 5.06499 5.10249 5.26758 5.39767 5.57260 5.66364 5.86450 6.02444 6.51588 6.58490 6.76049 6.80604 6.85449 7.00522 7.48068 7.61663 7.80299 8.02222 8.11476 8.46871 8.75084 9.31234 10.80673 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.044510 B = 0.007244 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.923771 B = 3864.587826 C = 4255.166314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.355 6.355 13 C 0.527 3.473 14 O -0.501 6.501 15 C -0.014 4.014 16 C -0.165 4.165 17 C -0.012 4.012 18 N -0.280 5.280 19 N -0.262 5.262 20 C 0.082 3.918 21 H 0.017 0.983 22 H 0.101 0.899 23 H 0.037 0.963 24 H 0.267 0.733 25 H 0.164 0.836 26 H 0.187 0.813 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -5.069 9.887 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.272 6.272 13 C 0.369 3.631 14 O -0.388 6.388 15 C -0.140 4.140 16 C -0.193 4.193 17 C -0.187 4.187 18 N -0.114 5.114 19 N -0.052 5.052 20 C -0.058 4.058 21 H 0.036 0.964 22 H 0.119 0.881 23 H 0.056 0.944 24 H 0.077 0.923 25 H 0.181 0.819 26 H 0.204 0.796 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.698 -5.828 9.619 11.566 hybrid contribution 0.048 0.604 -0.949 1.126 sum 2.746 -5.225 8.671 10.489 Atomic orbital electron populations 1.22181 0.97340 1.00212 1.01633 1.20745 0.91499 0.94119 0.77246 0.93294 1.21014 1.32735 1.13606 0.88718 0.91222 1.24891 0.94848 0.95069 0.99106 1.69902 1.35830 1.22470 1.24235 0.86206 0.78640 0.79464 0.81743 1.19477 1.20678 1.20706 1.86549 1.76160 1.43181 1.21290 1.19646 0.75161 0.85127 0.83178 1.90835 1.48408 1.15375 1.84217 1.21107 1.11564 0.85424 0.95926 1.22156 1.05069 1.01194 0.90924 1.23524 1.06010 0.88287 1.00892 1.73128 1.18086 1.27625 0.92600 1.45863 1.43985 1.06857 1.08500 1.22447 1.05839 0.88661 0.88855 0.96386 0.88052 0.94369 0.92323 0.81859 0.79622 0.89401 0.88950 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.33 37.16 0.35 -3.48 15 2 C 0.22 5.58 2.57 -27.89 -0.07 5.51 15 3 H 0.05 1.41 7.16 -51.92 -0.37 1.04 15 4 C -0.52 -14.02 8.90 -34.44 -0.31 -14.33 15 5 H 0.07 1.82 7.81 -52.49 -0.41 1.41 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 15 8 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 15 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 12 O -0.36 -8.03 7.33 -40.83 -0.30 -8.33 15 13 C 0.53 11.31 7.91 34.29 0.27 11.58 15 14 O -0.50 -11.97 16.18 -19.31 -0.31 -12.28 15 15 C -0.01 -0.26 6.96 -82.07 -0.57 -0.83 15 16 C -0.17 -2.52 10.85 -38.97 -0.42 -2.94 15 17 C -0.01 -0.16 12.03 -17.44 -0.21 -0.37 15 18 N -0.28 -4.27 11.90 30.58 0.36 -3.91 15 19 N -0.26 -4.22 3.75 -63.89 -0.24 -4.46 15 20 C 0.08 1.09 10.81 59.85 0.65 1.73 15 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 22 H 0.10 2.67 6.07 -51.93 -0.32 2.35 15 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 25 H 0.16 2.21 8.06 -52.49 -0.42 1.78 15 26 H 0.19 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.12 1.71 6.14 -51.93 -0.32 1.39 15 LS Contribution 260.16 15.07 3.92 3.92 Total: -1.00 -30.33 260.16 -4.46 -34.79 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.09 Total: 0.31 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.41 Total: -1.52 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.75 Total: -32.27 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.61 Total: -20.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.33 -4.46 -34.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.427 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds