Wall clock time and date at job start Mon Mar 30 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47120 * 2 1 4 4 C 1.50694 * 109.47226 * 239.99350 * 2 1 3 5 5 H 1.07995 * 120.00461 * 239.99919 * 4 2 1 6 6 C 1.37883 * 119.99964 * 60.00305 * 4 2 1 7 7 N 1.31516 * 119.99739 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00119 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47274 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47106 * 119.99990 * 8 6 4 11 11 H 1.48492 * 109.47434 * 240.00037 * 8 6 4 12 12 O 1.45201 * 109.47086 * 119.99625 * 2 1 3 13 13 C 1.34822 * 116.99797 * 270.00338 * 12 2 1 14 14 O 1.21553 * 120.00202 * 359.97438 * 13 12 2 15 15 C 1.47010 * 119.99823 * 179.72406 * 13 12 2 16 16 C 1.38485 * 126.89335 * 179.97438 * 15 13 12 17 17 C 1.39634 * 105.35374 * 179.89346 * 16 15 13 18 18 N 1.30876 * 107.88266 * 0.37269 * 17 16 15 19 19 N 1.28439 * 110.94191 * 359.76349 * 18 17 16 20 20 C 1.46505 * 125.19701 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47370 * 300.00921 * 1 2 3 22 22 H 1.09004 * 109.46957 * 60.00037 * 1 2 3 23 23 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99775 * 180.02562 * 7 6 4 25 25 H 1.07997 * 127.32149 * 0.02562 * 16 15 13 26 26 H 1.08007 * 126.06281 * 180.11080 * 17 16 15 27 27 H 1.09001 * 109.46860 * 269.97486 * 20 19 18 28 28 H 1.09005 * 109.47084 * 29.97358 * 20 19 18 29 29 H 1.08996 * 109.47269 * 149.97149 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1473 -0.1862 -4.8160 12 8 2.0140 -0.6844 1.1856 13 6 2.2179 0.0675 2.2860 14 8 1.9976 1.2625 2.2549 15 6 2.7015 -0.5589 3.5249 16 6 2.9586 0.0726 4.7303 17 6 3.3910 -0.9374 5.5920 18 7 3.3893 -2.0632 4.9245 19 7 2.9931 -1.8801 3.7166 20 6 2.8718 -2.9277 2.6997 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7082 1.1606 -3.4845 25 1 2.8462 1.1227 4.9564 26 1 3.6801 -0.8113 6.6250 27 1 3.8118 -3.0159 2.1550 28 1 2.6410 -3.8775 3.1822 29 1 2.0724 -2.6693 2.0053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:23 Heat of formation + Delta-G solvation = -30.130570 kcal Electronic energy + Delta-G solvation = -15277.281776 eV Core-core repulsion = 12587.769961 eV Total energy + Delta-G solvation = -2689.511815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.55312 -41.08479 -37.70543 -35.41093 -34.31787 -32.36282 -31.38677 -28.08068 -27.47678 -25.52904 -22.83465 -22.57064 -21.14760 -19.27886 -18.63297 -17.80501 -17.50940 -16.72776 -16.41924 -16.25472 -15.19783 -14.76747 -14.47735 -14.33795 -14.03435 -13.68009 -13.41657 -13.23656 -12.95269 -12.80272 -12.41968 -12.16640 -12.09849 -11.68785 -11.56888 -11.02894 -10.62757 -10.34119 -10.08170 -8.29993 -6.46856 -0.02393 1.40315 1.43261 1.45261 1.55087 1.56884 1.81747 1.91747 2.39112 3.01676 3.48568 3.69720 4.19638 4.34167 4.35319 4.48586 4.54058 4.72170 4.76649 4.81171 4.88603 5.06636 5.42185 5.45316 5.57253 5.68434 5.82893 5.98900 6.54334 6.75335 6.98377 7.24243 8.78104 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.044510 B = 0.007244 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.923771 B = 3864.587826 C = 4255.166314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.544 4.544 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.983 3.017 9 H -0.260 1.260 10 H -0.273 1.273 11 H -0.279 1.279 12 O -0.350 6.350 13 C 0.526 3.474 14 O -0.535 6.535 15 C -0.051 4.051 16 C -0.155 4.155 17 C 0.002 3.998 18 N -0.281 5.281 19 N -0.265 5.265 20 C 0.077 3.923 21 H 0.022 0.978 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.271 0.729 25 H 0.178 0.822 26 H 0.232 0.768 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -6.525 10.815 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.027 0.973 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.205 1.205 12 O -0.267 6.267 13 C 0.370 3.630 14 O -0.425 6.425 15 C -0.176 4.176 16 C -0.184 4.184 17 C -0.173 4.173 18 N -0.116 5.116 19 N -0.056 5.056 20 C -0.062 4.062 21 H 0.041 0.959 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.195 0.805 26 H 0.249 0.751 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.512 -7.302 10.564 13.313 hybrid contribution -0.178 1.076 -1.102 1.550 sum 3.334 -6.226 9.462 11.807 Atomic orbital electron populations 1.22009 0.96572 1.00660 1.00903 1.20468 0.92109 0.92290 0.78604 0.97277 1.21289 1.33411 1.13997 0.89478 0.90884 1.25821 0.94701 0.95633 1.02145 1.70023 1.36544 1.23684 1.25215 0.85123 0.78283 0.78437 0.77495 1.18421 1.19824 1.20464 1.86557 1.76321 1.42717 1.21063 1.20200 0.74251 0.84879 0.83630 1.90806 1.50144 1.16749 1.84763 1.20888 1.14597 0.86989 0.95143 1.22539 1.03393 1.02361 0.90097 1.24249 1.04070 0.86669 1.02277 1.73162 1.17757 1.28432 0.92230 1.46073 1.43959 1.06408 1.09143 1.22585 1.05605 0.89300 0.88688 0.95907 0.89896 0.93183 0.91982 0.80462 0.75129 0.88659 0.85942 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.22 9.33 71.98 0.67 -6.55 15 2 C 0.22 11.64 2.57 29.85 0.08 11.72 15 3 H 0.01 0.57 7.16 -2.38 -0.02 0.55 15 4 C -0.54 -29.58 8.90 25.60 0.23 -29.35 15 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 15 6 C 0.02 0.90 5.30 84.66 0.45 1.35 15 7 N -0.92 -51.49 11.32 21.45 0.24 -51.25 15 8 Si 0.98 41.50 29.54 68.60 2.03 43.53 15 9 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 12 O -0.35 -16.24 7.33 -57.34 -0.42 -16.66 15 13 C 0.53 23.09 7.91 70.12 0.55 23.64 15 14 O -0.53 -26.45 16.18 19.66 0.32 -26.13 15 15 C -0.05 -1.80 6.96 40.75 0.28 -1.51 15 16 C -0.16 -4.42 10.85 22.67 0.25 -4.18 15 17 C 0.00 0.04 12.03 85.17 1.02 1.06 15 18 N -0.28 -7.77 11.90 -57.15 -0.68 -8.45 15 19 N -0.27 -8.13 3.75 -356.06 -1.34 -9.47 15 20 C 0.08 1.96 10.81 127.77 1.38 3.34 15 21 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 22 H 0.08 4.48 6.07 -2.38 -0.01 4.47 15 23 H 0.05 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 25 H 0.18 4.44 8.06 -2.91 -0.02 4.42 15 26 H 0.23 3.03 8.06 -2.91 -0.02 3.01 15 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 28 H 0.12 2.31 8.14 -2.38 -0.02 2.29 15 29 H 0.10 2.87 6.14 -2.39 -0.01 2.86 15 Total: -1.00 -65.82 260.16 6.22 -59.60 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.16 Total: 9.31 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 4.91 Total: -0.47 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.77 Total: -69.17 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.10 Total: -42.79 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.82 6.22 -59.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.468 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds