Wall clock time and date at job start Mon Mar 30 2020 03:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 5 5 H 1.07997 * 120.00357 * 239.99917 * 4 2 1 6 6 C 1.37876 * 119.99656 * 60.00310 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 13 13 O 1.21283 * 120.00262 * 120.00231 * 12 2 1 14 14 N 1.34777 * 119.99928 * 299.72137 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 C 1.41383 * 126.80079 * 95.00132 * 16 15 14 18 18 C 1.35453 * 103.98443 * 180.02562 * 17 16 15 19 19 O 1.34036 * 106.44854 * 359.97438 * 18 17 16 20 20 N 1.20925 * 111.56580 * 359.71314 * 19 18 17 21 21 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 22 22 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 23 23 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 24 24 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 26 26 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 27 27 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 28 28 H 1.08003 * 128.00653 * 0.03502 * 17 16 15 29 29 H 1.08002 * 126.77482 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 3.1474 -2.2867 -3.6035 10 1 1.1678 -1.5869 -4.8163 11 1 3.1473 -0.1862 -4.8160 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7112 -0.2466 2.4546 15 6 2.2044 -0.9336 3.6508 16 6 1.7062 -0.2203 4.8812 17 6 0.5525 -0.5368 5.6348 18 6 0.5447 0.3873 6.6251 19 8 1.6219 1.1609 6.4307 20 7 2.2558 0.8056 5.4642 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7090 1.1612 -3.4845 25 1 1.1535 0.5421 2.5436 26 1 1.8416 -1.9614 3.6551 27 1 3.2944 -0.9332 3.6465 28 1 -0.1578 -1.3316 5.4612 29 1 -0.1854 0.4821 7.4152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829569661.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:29 Heat of formation + Delta-G solvation = -4.635608 kcal Electronic energy + Delta-G solvation = -14827.061592 eV Core-core repulsion = 12138.655321 eV Total energy + Delta-G solvation = -2688.406270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.99099 -40.62190 -36.71451 -35.78919 -34.29650 -32.71208 -32.36888 -28.40234 -27.19707 -24.42901 -24.03419 -22.13275 -21.22488 -18.97352 -18.61132 -18.32930 -17.77114 -16.87721 -16.43152 -16.16194 -15.69167 -14.74011 -14.71184 -14.33419 -14.01919 -13.54925 -13.39440 -12.98283 -12.70425 -12.60343 -12.38074 -12.20475 -12.04011 -11.43343 -11.05051 -10.64104 -10.58171 -10.33669 -10.12058 -8.16538 -6.27323 0.56635 1.12361 1.39373 1.41256 1.55038 1.84987 2.35904 2.45119 2.58990 3.06815 3.13073 3.58129 4.12087 4.27244 4.40362 4.50434 4.61745 4.73215 4.83739 4.92830 4.99747 5.12292 5.40564 5.47293 5.72920 5.91725 6.18202 6.63209 6.82587 7.30882 7.35821 7.45955 8.89693 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.064269 B = 0.005485 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.563161 B = 5103.608143 C = 5288.302847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.275 1.275 12 C 0.525 3.475 13 O -0.582 6.582 14 N -0.722 5.722 15 C 0.201 3.799 16 C -0.019 4.019 17 C -0.228 4.228 18 C -0.037 4.037 19 O 0.103 5.897 20 N -0.386 5.386 21 H 0.049 0.951 22 H 0.071 0.929 23 H 0.027 0.973 24 H 0.265 0.735 25 H 0.408 0.592 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.196 0.804 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 0.293 17.867 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.314 3.686 13 O -0.462 6.462 14 N -0.376 5.376 15 C 0.077 3.923 16 C -0.176 4.176 17 C -0.250 4.250 18 C -0.118 4.118 19 O 0.033 5.967 20 N -0.088 5.088 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.243 0.757 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.213 0.787 29 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -3.981 0.413 17.399 17.853 hybrid contribution -0.400 -0.615 -0.949 1.199 sum -4.380 -0.202 16.450 17.025 Atomic orbital electron populations 1.21546 0.94731 0.99688 1.01660 1.18829 0.95643 0.95815 0.89469 0.94339 1.21324 1.31652 1.12788 0.91038 0.93164 1.25621 0.95161 0.95745 1.01509 1.69963 1.37255 1.23581 1.24316 0.85509 0.78380 0.78551 0.79240 1.20363 1.19743 1.20070 1.21581 0.78120 0.83700 0.85178 1.90515 1.39683 1.28591 1.87366 1.45989 1.54565 1.32635 1.04426 1.19334 0.98619 0.95349 0.78977 1.23609 0.97019 0.96664 1.00319 1.23111 0.99870 1.05189 0.96840 1.26978 0.91990 0.90700 1.02099 1.84817 1.30544 1.46561 1.34747 1.73934 1.19401 1.15462 1.00053 0.93177 0.91030 0.95372 0.92552 0.75691 0.88851 0.91981 0.78694 0.71427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 15 2 C 0.02 1.21 2.64 -12.29 -0.03 1.18 15 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 15 4 C -0.53 -31.12 8.37 25.60 0.21 -30.91 15 5 H 0.05 3.15 6.75 -2.91 -0.02 3.13 15 6 C 0.02 1.06 5.30 84.65 0.45 1.51 15 7 N -0.91 -51.67 11.32 21.45 0.24 -51.43 15 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 15 9 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 12 C 0.52 24.69 7.15 87.66 0.63 25.31 15 13 O -0.58 -31.47 15.46 -3.04 -0.05 -31.52 15 14 N -0.72 -25.94 5.44 -466.79 -2.54 -28.48 15 15 C 0.20 6.23 6.26 85.63 0.54 6.77 15 16 C -0.02 -0.48 6.70 43.58 0.29 -0.18 15 17 C -0.23 -3.79 11.12 22.40 0.25 -3.54 15 18 C -0.04 -0.44 12.30 67.18 0.83 0.39 15 19 O 0.10 2.09 11.20 71.67 0.80 2.90 15 20 N -0.39 -10.50 12.07 -49.55 -0.60 -11.10 15 21 H 0.05 1.85 7.57 -2.39 -0.02 1.83 15 22 H 0.07 3.62 6.07 -2.39 -0.01 3.61 15 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.27 14.15 8.31 -92.70 -0.77 13.38 15 25 H 0.41 13.01 7.89 -92.71 -0.73 12.28 15 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.20 2.26 8.06 -2.91 -0.02 2.24 15 29 H 0.27 -0.01 8.06 -2.91 -0.02 -0.04 15 Total: -1.00 -72.27 260.34 4.13 -68.14 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.44 Total: 8.40 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 3.80 Total: -4.24 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -2.90 Total: -91.01 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: 0.76 Total: -28.62 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.27 4.13 -68.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829569661.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.507 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds