Wall clock time and date at job start Mon Mar 30 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57920 * 2 1 4 4 C 1.47516 * 125.77234 * 359.95714 * 3 2 1 5 5 O 1.21601 * 119.99954 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00019 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00518 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47174 * 120.00320 * 12 10 8 15 15 H 1.48497 * 109.47378 * 240.00235 * 12 10 8 16 16 N 1.34402 * 108.45528 * 180.22546 * 3 2 1 17 17 N 1.28764 * 109.52341 * 359.58497 * 16 3 2 18 18 N 1.34811 * 126.57985 * 179.97438 * 2 1 3 19 19 C 1.46505 * 126.59383 * 0.05200 * 18 2 1 20 20 H 1.09000 * 109.47021 * 89.99717 * 1 2 3 21 21 H 1.08998 * 109.46975 * 210.00084 * 1 2 3 22 22 H 1.08996 * 109.46810 * 329.99922 * 1 2 3 23 23 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 24 24 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 25 25 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 26 26 H 0.96992 * 120.00316 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.46933 * 90.00253 * 19 18 2 28 28 H 1.09001 * 109.46778 * 210.00424 * 19 18 2 29 29 H 1.09004 * 109.47255 * 330.00285 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6860 2.7628 -0.0022 6 7 2.7818 3.4987 -0.0013 7 6 2.3376 4.8948 -0.0016 8 6 3.5392 5.8042 -0.0014 9 1 4.5343 5.3843 -0.0015 10 6 3.3683 7.1723 -0.0022 11 7 2.1567 7.6837 -0.0026 12 14 4.8578 8.2996 -0.0013 13 1 6.0975 7.4820 -0.0003 14 1 4.8312 9.1561 -1.2141 15 1 4.8290 9.1571 1.2108 16 7 3.5984 0.6788 -0.0050 17 7 3.6299 -0.6084 0.0007 18 7 2.3104 -1.0826 0.0005 19 6 1.8864 -2.4849 0.0000 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 3.7293 3.2912 -0.0007 24 1 1.7377 5.0850 -0.8917 25 1 1.7379 5.0855 0.8883 26 1 2.0365 8.6462 -0.0028 27 1 1.7820 -2.8325 -1.0277 28 1 2.6327 -3.0903 0.5144 29 1 0.9289 -2.5751 0.5131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885614883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:22 Heat of formation + Delta-G solvation = 49.570535 kcal Electronic energy + Delta-G solvation = -14776.645956 eV Core-core repulsion = 12122.882991 eV Total energy + Delta-G solvation = -2653.762964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08280 -38.43844 -34.93148 -34.13488 -32.25676 -32.14356 -28.54000 -27.48301 -26.79611 -23.55002 -22.13255 -20.79530 -19.78435 -17.89028 -16.35834 -16.31088 -15.42136 -15.06600 -14.38809 -14.30765 -14.04412 -13.59547 -13.36893 -13.02799 -12.83962 -12.53284 -11.94654 -11.78315 -11.74891 -11.03226 -10.88547 -10.86816 -10.26958 -10.14932 -9.33127 -9.25455 -8.95790 -8.68459 -7.82402 -6.11787 -4.17561 1.23491 2.05041 2.08131 3.28705 3.35791 3.40269 3.92115 3.99207 4.33312 4.34807 4.45910 4.70541 4.75041 4.97987 5.11424 5.24794 5.38484 5.48078 5.69267 5.90547 6.15004 6.47308 7.33105 7.45386 7.55248 7.72411 8.00621 8.10708 8.68707 8.81541 9.09891 9.48555 10.98590 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.057138 B = 0.005670 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.925730 B = 4937.084202 C = 5401.260867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.113 3.887 3 C -0.092 4.092 4 C 0.585 3.415 5 O -0.553 6.553 6 N -0.692 5.692 7 C 0.249 3.751 8 C -0.541 4.541 9 H 0.065 0.935 10 C 0.063 3.937 11 N -0.887 5.887 12 Si 0.904 3.096 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 N -0.202 5.202 17 N -0.079 5.079 18 N -0.371 5.371 19 C 0.090 3.910 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.399 0.601 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -18.624 0.074 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C -0.232 4.232 4 C 0.367 3.633 5 O -0.433 6.433 6 N -0.339 5.339 7 C 0.128 3.872 8 C -0.579 4.579 9 H 0.083 0.917 10 C -0.140 4.140 11 N -0.525 5.525 12 Si 0.731 3.269 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.208 1.208 16 N -0.075 5.075 17 N -0.058 5.058 18 N -0.158 5.158 19 C -0.051 4.051 20 H 0.108 0.892 21 H 0.089 0.911 22 H 0.133 0.867 23 H 0.233 0.767 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.991 -18.642 0.071 18.749 hybrid contribution 0.252 0.565 -0.025 0.619 sum -1.739 -18.078 0.046 18.161 Atomic orbital electron populations 1.20689 0.84776 1.05163 1.04481 1.21919 0.96200 0.86338 0.97956 1.21658 0.88575 0.96349 1.16586 1.16801 0.86137 0.82253 0.78072 1.90711 1.16024 1.83521 1.53007 1.46332 1.09345 1.07964 1.70274 1.19196 0.96070 0.73924 0.97965 1.21292 0.92623 0.91221 1.52770 0.91652 1.24936 0.96312 0.98028 0.94725 1.69980 1.20762 1.12458 1.49280 0.86354 0.82442 0.80445 0.77667 1.19527 1.20838 1.20832 1.74607 1.19463 1.03788 1.09593 1.81937 0.95937 1.03790 1.24170 1.50231 1.06630 1.07519 1.51392 1.22083 1.02208 0.76469 1.04388 0.89224 0.91133 0.86745 0.76702 0.95173 0.95180 0.92558 0.89549 0.88344 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.57 36.01 0.34 -0.66 15 2 C 0.11 1.62 7.02 -81.87 -0.57 1.04 15 3 C -0.09 -1.68 6.99 -83.55 -0.58 -2.26 15 4 C 0.58 12.67 7.82 -12.48 -0.10 12.57 15 5 O -0.55 -12.92 14.72 5.28 0.08 -12.84 15 6 N -0.69 -16.00 5.55 -62.53 -0.35 -16.35 15 7 C 0.25 6.76 5.43 -5.19 -0.03 6.74 15 8 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 15 9 H 0.07 1.75 7.60 -52.48 -0.40 1.35 15 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 11 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 12 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 15 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 16 N -0.20 -3.70 12.04 32.84 0.40 -3.31 15 17 N -0.08 -1.27 13.78 60.35 0.83 -0.44 15 18 N -0.37 -4.63 4.03 -63.58 -0.26 -4.89 15 19 C 0.09 0.56 11.33 59.85 0.68 1.24 15 20 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.50 7.18 -51.93 -0.37 0.13 15 22 H 0.11 1.53 6.43 -51.93 -0.33 1.20 15 23 H 0.40 8.63 8.01 -40.82 -0.33 8.30 15 24 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 15 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 15 29 H 0.09 0.35 7.16 -51.93 -0.37 -0.02 15 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -33.78 262.55 -3.36 -37.13 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.05 Total: 1.12 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.68 Total: 4.88 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 1.36 Total: -50.60 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.78 -3.36 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885614883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.704 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds