Wall clock time and date at job start Mon Mar 30 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57920 * 2 1 4 4 C 1.47516 * 125.77234 * 359.95714 * 3 2 1 5 5 O 1.21601 * 119.99954 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00019 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99873 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.46928 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99963 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99865 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00518 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47174 * 120.00320 * 12 10 8 15 15 H 1.48497 * 109.47378 * 240.00235 * 12 10 8 16 16 N 1.34402 * 108.45528 * 180.22546 * 3 2 1 17 17 N 1.28764 * 109.52341 * 359.58497 * 16 3 2 18 18 N 1.34811 * 126.57985 * 179.97438 * 2 1 3 19 19 C 1.46505 * 126.59383 * 0.05200 * 18 2 1 20 20 H 1.09000 * 109.47021 * 89.99717 * 1 2 3 21 21 H 1.08998 * 109.46975 * 210.00084 * 1 2 3 22 22 H 1.08996 * 109.46810 * 329.99922 * 1 2 3 23 23 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 24 24 H 1.09004 * 109.47073 * 299.99562 * 7 6 4 25 25 H 1.09000 * 109.47212 * 59.99645 * 7 6 4 26 26 H 0.96992 * 120.00316 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.46933 * 90.00253 * 19 18 2 28 28 H 1.09001 * 109.46778 * 210.00424 * 19 18 2 29 29 H 1.09004 * 109.47255 * 330.00285 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0009 5 8 0.6860 2.7628 -0.0022 6 7 2.7818 3.4987 -0.0013 7 6 2.3376 4.8948 -0.0016 8 6 3.5392 5.8042 -0.0014 9 1 4.5343 5.3843 -0.0015 10 6 3.3683 7.1723 -0.0022 11 7 2.1567 7.6837 -0.0026 12 14 4.8578 8.2996 -0.0013 13 1 6.0975 7.4820 -0.0003 14 1 4.8312 9.1561 -1.2141 15 1 4.8290 9.1571 1.2108 16 7 3.5984 0.6788 -0.0050 17 7 3.6299 -0.6084 0.0007 18 7 2.3104 -1.0826 0.0005 19 6 1.8864 -2.4849 0.0000 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 3.7293 3.2912 -0.0007 24 1 1.7377 5.0850 -0.8917 25 1 1.7379 5.0855 0.8883 26 1 2.0365 8.6462 -0.0028 27 1 1.7820 -2.8325 -1.0277 28 1 2.6327 -3.0903 0.5144 29 1 0.9289 -2.5751 0.5131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885614883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:22 Heat of formation + Delta-G solvation = 22.537107 kcal Electronic energy + Delta-G solvation = -14777.818213 eV Core-core repulsion = 12122.882991 eV Total energy + Delta-G solvation = -2654.935222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.28530 -40.20222 -36.29205 -35.81354 -34.31005 -33.27091 -30.03531 -28.48268 -28.31154 -25.31742 -23.79804 -21.92578 -21.42348 -19.50681 -18.06012 -17.44106 -17.13027 -16.64621 -16.20501 -15.94914 -15.23775 -14.81481 -14.32379 -14.23374 -13.98582 -13.95679 -13.75822 -13.23679 -12.97043 -12.88733 -12.74339 -12.23637 -12.17555 -11.46121 -11.14124 -11.00249 -10.81071 -10.26851 -9.78376 -8.28936 -6.44543 0.11580 0.62202 1.15581 1.43450 1.44312 1.58431 2.28710 2.30288 2.50742 3.05733 3.22169 3.52158 3.64035 3.80766 4.33632 4.42486 4.60830 4.67188 4.68933 4.87080 5.05903 5.14748 5.25090 5.45586 5.54783 5.66241 5.84268 6.63637 6.71118 6.97766 7.20572 7.35874 8.83354 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.057138 B = 0.005670 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.925730 B = 4937.084202 C = 5401.260867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.132 3.868 3 C -0.129 4.129 4 C 0.586 3.414 5 O -0.576 6.576 6 N -0.697 5.697 7 C 0.268 3.732 8 C -0.559 4.559 9 H 0.076 0.924 10 C 0.008 3.992 11 N -0.926 5.926 12 Si 0.983 3.017 13 H -0.259 1.259 14 H -0.276 1.276 15 H -0.276 1.276 16 N -0.228 5.228 17 N -0.091 5.091 18 N -0.351 5.351 19 C 0.072 3.928 20 H 0.105 0.895 21 H 0.119 0.881 22 H 0.086 0.914 23 H 0.406 0.594 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.270 0.730 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -20.661 0.060 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.007 4.007 3 C -0.270 4.270 4 C 0.371 3.629 5 O -0.457 6.457 6 N -0.345 5.345 7 C 0.145 3.855 8 C -0.597 4.597 9 H 0.094 0.906 10 C -0.192 4.192 11 N -0.565 5.565 12 Si 0.806 3.194 13 H -0.183 1.183 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.101 5.101 17 N -0.071 5.071 18 N -0.138 5.138 19 C -0.066 4.066 20 H 0.123 0.877 21 H 0.138 0.862 22 H 0.105 0.895 23 H 0.241 0.759 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.542 -20.754 0.057 20.811 hybrid contribution 0.007 0.998 -0.022 0.998 sum -1.535 -19.756 0.035 19.816 Atomic orbital electron populations 1.20820 0.82140 1.06210 1.05697 1.22289 0.97465 0.85617 0.95355 1.21242 0.89842 0.95240 1.20638 1.17213 0.85539 0.83525 0.76576 1.90684 1.16902 1.84401 1.53721 1.46117 1.10019 1.06835 1.71527 1.18666 0.95449 0.76450 0.94891 1.21618 0.93051 0.91908 1.53135 0.90595 1.25986 0.99693 0.99727 0.93758 1.70115 1.23346 1.13192 1.49839 0.85137 0.78388 0.77953 0.77914 1.18280 1.20114 1.20103 1.74565 1.19853 1.04981 1.10667 1.81812 0.98059 1.02859 1.24333 1.50601 1.05048 1.09318 1.48811 1.22760 1.04282 0.72843 1.06737 0.87704 0.86223 0.89488 0.75891 0.98404 0.98402 0.92100 0.87184 0.86871 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.57 71.24 0.68 -1.03 15 2 C 0.13 3.53 7.02 41.72 0.29 3.82 15 3 C -0.13 -4.75 6.99 40.81 0.29 -4.47 15 4 C 0.59 26.33 7.82 86.69 0.68 27.01 15 5 O -0.58 -28.00 14.72 -4.03 -0.06 -28.06 15 6 N -0.70 -33.68 5.55 -470.00 -2.61 -36.29 15 7 C 0.27 15.32 5.43 85.63 0.46 15.78 15 8 C -0.56 -32.09 9.28 25.60 0.24 -31.85 15 9 H 0.08 4.10 7.60 -2.91 -0.02 4.07 15 10 C 0.01 0.47 5.46 84.65 0.46 0.93 15 11 N -0.93 -56.35 13.29 21.45 0.28 -56.06 15 12 Si 0.98 43.89 29.54 68.60 2.03 45.92 15 13 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 16 N -0.23 -8.36 12.04 -50.00 -0.60 -8.97 15 17 N -0.09 -2.80 13.78 37.02 0.51 -2.28 15 18 N -0.35 -7.76 4.03 -355.08 -1.43 -9.19 15 19 C 0.07 0.56 11.33 127.77 1.45 2.00 15 20 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.12 1.08 7.18 -2.39 -0.02 1.06 15 22 H 0.09 2.25 6.43 -2.39 -0.02 2.23 15 23 H 0.41 18.24 8.01 -92.71 -0.74 17.50 15 24 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 15 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 27 H 0.11 0.46 8.14 -2.39 -0.02 0.44 15 28 H 0.11 0.63 8.14 -2.39 -0.02 0.62 15 29 H 0.13 0.18 7.16 -2.39 -0.02 0.17 15 Total: -1.00 -76.65 262.55 3.11 -73.54 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.44 Total: 9.19 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.55 Total: 12.20 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -3.84 Total: -112.79 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -76.65 3.11 -73.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885614883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.077 kcal (2) G-P(sol) polarization free energy of solvation -76.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds