Wall clock time and date at job start Mon Mar 30 2020 03:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21277 * 120.00023 * 240.00115 * 12 2 1 14 14 N 1.34774 * 119.99464 * 60.00342 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.46917 * 179.97438 * 15 14 12 17 17 C 1.35353 * 126.91570 * 264.68731 * 16 15 14 18 18 N 1.33772 * 106.49748 * 179.90704 * 17 16 15 19 19 N 1.28638 * 108.88471 * 0.36395 * 18 17 16 20 20 N 1.28717 * 110.17697 * 359.77132 * 19 18 17 21 21 H 0.97003 * 125.86368 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 23 23 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 24 24 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 27 27 H 1.08998 * 109.47262 * 299.99754 * 15 14 12 28 28 H 1.09002 * 109.47037 * 60.00718 * 15 14 12 29 29 H 1.07993 * 126.74979 * 0.03811 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9405 -3.6506 16 6 1.6926 -0.2306 -4.8811 17 6 0.5893 -0.5372 -5.6027 18 7 0.5286 0.3520 -6.6003 19 7 1.5324 1.1512 -6.5073 20 7 2.2566 0.8379 -5.4903 21 1 3.0671 1.2904 -5.2089 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 0.7164 1.1670 3.4843 26 1 1.1494 0.5387 -2.5436 27 1 3.2855 -0.9401 -3.6504 28 1 1.8325 -1.9683 -3.6507 29 1 -0.1065 -1.3402 -5.4097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330603202.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:27 Heat of formation + Delta-G solvation = 48.651634 kcal Electronic energy + Delta-G solvation = -14832.709051 eV Core-core repulsion = 12178.906240 eV Total energy + Delta-G solvation = -2653.802811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.48456 -38.93717 -34.90138 -33.81061 -33.41112 -31.55106 -30.28914 -26.50271 -25.18544 -23.16724 -22.62328 -21.83867 -19.62525 -18.49238 -16.56740 -16.25023 -16.12914 -15.09993 -14.94420 -14.55214 -14.28290 -13.64594 -13.11663 -12.89077 -12.38928 -11.87563 -11.54591 -11.14493 -11.05440 -10.82088 -10.76939 -10.74651 -10.32589 -10.02641 -9.60878 -9.05557 -8.72534 -8.68861 -8.39251 -6.08639 -4.12512 1.28060 2.34985 2.53500 3.32584 3.35635 3.40444 3.56256 3.82022 4.24770 4.42929 4.53800 4.85126 5.16379 5.24791 5.48154 5.64882 5.93640 6.11257 6.55360 6.60618 6.75337 6.77111 6.87362 7.39276 7.68825 7.88998 8.04135 8.23815 8.31051 8.95865 9.06118 9.53374 10.98892 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.064154 B = 0.005505 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.348263 B = 5084.825594 C = 5266.977734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.031 3.969 3 H 0.053 0.947 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.541 6.541 14 N -0.747 5.747 15 C 0.191 3.809 16 C -0.022 4.022 17 C -0.030 4.030 18 N -0.269 5.269 19 N -0.078 5.078 20 N -0.382 5.382 21 H 0.449 0.551 22 H 0.093 0.907 23 H 0.012 0.988 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.398 0.602 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 0.189 -11.905 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.543 4.543 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.417 6.417 14 N -0.404 5.404 15 C 0.065 3.935 16 C -0.156 4.156 17 C -0.188 4.188 18 N -0.135 5.135 19 N -0.059 5.059 20 N -0.104 5.104 21 H 0.295 0.705 22 H 0.112 0.888 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.232 0.768 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.876 0.467 -12.915 12.953 hybrid contribution 0.667 -0.431 1.806 1.973 sum 1.543 0.036 -11.108 11.215 Atomic orbital electron populations 1.21751 0.96380 0.99953 1.00992 1.18880 0.94260 0.96804 0.89076 0.92978 1.21097 1.31348 1.12871 0.88962 0.90771 1.24955 0.95055 0.95024 0.99160 1.69860 1.36952 1.22972 1.23766 0.86493 0.79283 0.79723 0.81567 1.20184 1.21360 1.20133 1.22080 0.78291 0.84275 0.84133 1.90549 1.37806 1.26731 1.86574 1.46439 1.56003 1.32992 1.04935 1.19558 0.99255 0.95666 0.78997 1.22436 0.98268 0.94058 1.00814 1.23530 0.98738 1.02385 0.94172 1.75132 1.13980 1.03501 1.20935 1.78293 1.01131 1.20804 1.05684 1.45166 1.22782 1.22563 1.19912 0.70467 0.88812 0.96922 0.94835 0.92825 0.76758 0.90509 0.88772 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 15 2 C 0.03 0.73 2.64 -92.92 -0.24 0.49 15 3 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 4 C -0.50 -13.84 8.37 -34.44 -0.29 -14.13 15 5 H 0.07 2.14 6.75 -52.49 -0.35 1.79 15 6 C 0.06 1.60 5.31 -17.82 -0.09 1.50 15 7 N -0.90 -24.62 11.33 55.43 0.63 -23.99 15 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 C 0.52 10.91 7.15 -10.99 -0.08 10.84 15 13 O -0.54 -13.05 15.46 5.56 0.09 -12.96 15 14 N -0.75 -11.32 5.44 -61.47 -0.33 -11.65 15 15 C 0.19 2.30 6.24 -5.19 -0.03 2.27 15 16 C -0.02 -0.23 6.67 -82.09 -0.55 -0.78 15 17 C -0.03 -0.34 11.99 -17.74 -0.21 -0.56 15 18 N -0.27 -3.64 12.41 30.23 0.38 -3.27 15 19 N -0.08 -1.00 13.38 60.35 0.81 -0.19 15 20 N -0.38 -3.80 6.98 33.54 0.23 -3.57 15 21 H 0.45 3.04 8.96 -190.40 -1.71 1.33 15 22 H 0.09 2.30 6.08 -51.93 -0.32 1.99 15 23 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 15 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 26 H 0.40 5.45 7.88 -40.82 -0.32 5.13 15 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 29 H 0.19 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -31.82 259.26 -4.83 -36.65 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.34 Total: 1.73 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.17 Total: -2.96 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 1.71 Total: -42.67 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.82 -4.83 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330603202.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.298 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds