Wall clock time and date at job start Mon Mar 30 2020 03:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47107 * 239.99938 * 2 1 3 5 5 H 1.08004 * 120.00333 * 240.00360 * 4 2 1 6 6 C 1.37880 * 119.99863 * 60.00087 * 4 2 1 7 7 N 1.31512 * 119.99782 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47304 * 119.99893 * 8 6 4 11 11 H 1.48499 * 109.47484 * 240.00553 * 8 6 4 12 12 C 1.50700 * 109.46772 * 120.00497 * 2 1 3 13 13 O 1.21286 * 120.00259 * 120.00020 * 12 2 1 14 14 N 1.34783 * 120.00078 * 299.99467 * 12 2 1 15 15 C 1.46500 * 119.99901 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.35349 * 126.91313 * 265.03885 * 16 15 14 18 18 N 1.33777 * 106.49799 * 179.97438 * 17 16 15 19 19 N 1.28634 * 108.88349 * 359.97438 * 18 17 16 20 20 N 1.28715 * 110.18090 * 359.97438 * 19 18 17 21 21 H 0.97000 * 125.86568 * 180.02562 * 20 19 18 22 22 H 1.09003 * 109.46872 * 59.99445 * 1 2 3 23 23 H 1.08993 * 109.47366 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46855 * 300.00154 * 1 2 3 25 25 H 0.97000 * 119.99623 * 179.97438 * 7 6 4 26 26 H 0.96995 * 119.99539 * 0.02562 * 14 12 2 27 27 H 1.08993 * 109.47517 * 60.00320 * 15 14 12 28 28 H 1.09001 * 109.47122 * 299.99518 * 15 14 12 29 29 H 1.07997 * 126.75241 * 359.94788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6967 1.1191 14 7 1.7067 -0.2501 2.4546 15 6 2.1954 -0.9405 3.6507 16 6 1.6925 -0.2305 4.8812 17 6 2.3452 0.7132 5.5991 18 7 1.5282 1.0625 6.5991 19 7 0.4413 0.3807 6.5061 20 7 0.4967 -0.4067 5.4894 21 1 -0.1991 -1.0213 5.2081 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7096 1.1618 -3.4843 26 1 1.1488 0.5384 2.5436 27 1 3.2854 -0.9402 3.6506 28 1 1.8323 -1.9683 3.6509 29 1 3.3318 1.1064 5.4034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330603203.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:30 Heat of formation + Delta-G solvation = 48.595672 kcal Electronic energy + Delta-G solvation = -14835.957355 eV Core-core repulsion = 12182.152118 eV Total energy + Delta-G solvation = -2653.805238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.48449 -38.93703 -34.90200 -33.81967 -33.41025 -31.55237 -30.29436 -26.50451 -25.20340 -23.17358 -22.61992 -21.84389 -19.63044 -18.48527 -16.56238 -16.25772 -16.15745 -15.10747 -14.92561 -14.54468 -14.24442 -13.72602 -13.06297 -12.89957 -12.43247 -11.84393 -11.59038 -11.15119 -11.08884 -10.81380 -10.77971 -10.72225 -10.34218 -10.02850 -9.61008 -9.04066 -8.73058 -8.68900 -8.40355 -6.09261 -4.12892 1.28121 2.34893 2.53682 3.28494 3.36453 3.44010 3.56189 3.82078 4.24833 4.42828 4.53778 4.84926 5.16325 5.24412 5.48208 5.64933 5.93527 6.10740 6.51593 6.60695 6.72205 6.76488 6.85327 7.38308 7.67006 7.88830 8.03262 8.23861 8.30633 8.96398 9.06033 9.53181 10.98385 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.064322 B = 0.005515 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.205515 B = 5075.695581 C = 5271.673692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.055 0.945 4 C -0.502 4.502 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.522 3.478 13 O -0.541 6.541 14 N -0.747 5.747 15 C 0.191 3.809 16 C -0.022 4.022 17 C -0.031 4.031 18 N -0.269 5.269 19 N -0.078 5.078 20 N -0.382 5.382 21 H 0.449 0.551 22 H 0.094 0.906 23 H 0.031 0.969 24 H 0.010 0.990 25 H 0.261 0.739 26 H 0.398 0.602 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -1.033 11.915 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.312 3.688 13 O -0.416 6.416 14 N -0.404 5.404 15 C 0.065 3.935 16 C -0.156 4.156 17 C -0.189 4.189 18 N -0.136 5.136 19 N -0.059 5.059 20 N -0.104 5.104 21 H 0.295 0.705 22 H 0.113 0.887 23 H 0.050 0.950 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.232 0.768 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.252 -1.081 12.931 13.036 hybrid contribution 0.159 -0.752 -1.817 1.973 sum -1.093 -1.833 11.114 11.317 Atomic orbital electron populations 1.21752 0.96538 0.99777 1.00979 1.18896 0.94139 0.96978 0.89124 0.92779 1.21177 1.31095 1.12893 0.88918 0.90653 1.24958 0.95064 0.95047 0.99186 1.69874 1.37069 1.23040 1.23553 0.86394 0.78639 0.79787 0.82418 1.19525 1.21050 1.20999 1.22079 0.78325 0.84243 0.84128 1.90554 1.37731 1.26782 1.86575 1.46440 1.56039 1.32960 1.04936 1.19556 1.00095 0.94833 0.78991 1.22437 0.88407 1.03865 1.00867 1.23532 1.02501 0.98616 0.94207 1.75133 0.98298 1.19277 1.20852 1.78291 1.18532 1.03406 1.05672 1.45167 1.14943 1.30302 1.19991 0.70465 0.88733 0.94978 0.97077 0.92939 0.76759 0.88747 0.90533 0.78908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.87 37.16 0.33 -2.56 15 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 15 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 4 C -0.50 -13.77 8.37 -34.44 -0.29 -14.06 15 5 H 0.08 2.18 6.75 -52.48 -0.35 1.83 15 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 15 7 N -0.90 -24.58 11.32 55.43 0.63 -23.95 15 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 9 H -0.27 -6.46 7.11 56.52 0.40 -6.05 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 C 0.52 10.91 7.15 -10.98 -0.08 10.83 15 13 O -0.54 -13.05 15.46 5.55 0.09 -12.96 15 14 N -0.75 -11.31 5.44 -61.47 -0.33 -11.65 15 15 C 0.19 2.30 6.24 -5.19 -0.03 2.27 15 16 C -0.02 -0.23 6.67 -82.09 -0.55 -0.78 15 17 C -0.03 -0.35 11.99 -17.73 -0.21 -0.56 15 18 N -0.27 -3.64 12.41 30.23 0.38 -3.26 15 19 N -0.08 -1.00 13.38 60.35 0.81 -0.19 15 20 N -0.38 -3.82 6.98 33.54 0.23 -3.59 15 21 H 0.45 3.08 8.96 -190.40 -1.71 1.38 15 22 H 0.09 2.31 6.07 -51.93 -0.32 1.99 15 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 15 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 26 H 0.40 5.45 7.88 -40.82 -0.32 5.13 15 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 15 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 29 H 0.19 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 259.24 15.07 3.91 3.91 Total: -1.00 -31.82 259.24 -4.83 -36.65 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.34 Total: 1.69 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.17 Total: -2.92 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 1.71 Total: -42.64 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.82 -4.83 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330603203.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.244 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds