Wall clock time and date at job start Mon Mar 30 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47107 * 239.99938 * 2 1 3 5 5 H 1.08004 * 120.00333 * 240.00360 * 4 2 1 6 6 C 1.37880 * 119.99863 * 60.00087 * 4 2 1 7 7 N 1.31512 * 119.99782 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47304 * 119.99893 * 8 6 4 11 11 H 1.48499 * 109.47484 * 240.00553 * 8 6 4 12 12 C 1.50700 * 109.46772 * 120.00497 * 2 1 3 13 13 O 1.21286 * 120.00259 * 120.00020 * 12 2 1 14 14 N 1.34783 * 120.00078 * 299.99467 * 12 2 1 15 15 C 1.46500 * 119.99901 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.46671 * 180.02562 * 15 14 12 17 17 C 1.35349 * 126.91313 * 265.03885 * 16 15 14 18 18 N 1.33777 * 106.49799 * 179.97438 * 17 16 15 19 19 N 1.28634 * 108.88349 * 359.97438 * 18 17 16 20 20 N 1.28715 * 110.18090 * 359.97438 * 19 18 17 21 21 H 0.97000 * 125.86568 * 180.02562 * 20 19 18 22 22 H 1.09003 * 109.46872 * 59.99445 * 1 2 3 23 23 H 1.08993 * 109.47366 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46855 * 300.00154 * 1 2 3 25 25 H 0.97000 * 119.99623 * 179.97438 * 7 6 4 26 26 H 0.96995 * 119.99539 * 0.02562 * 14 12 2 27 27 H 1.08993 * 109.47517 * 60.00320 * 15 14 12 28 28 H 1.09001 * 109.47122 * 299.99518 * 15 14 12 29 29 H 1.07997 * 126.75241 * 359.94788 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6967 1.1191 14 7 1.7067 -0.2501 2.4546 15 6 2.1954 -0.9405 3.6507 16 6 1.6925 -0.2305 4.8812 17 6 2.3452 0.7132 5.5991 18 7 1.5282 1.0625 6.5991 19 7 0.4413 0.3807 6.5061 20 7 0.4967 -0.4067 5.4894 21 1 -0.1991 -1.0213 5.2081 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7096 1.1618 -3.4843 26 1 1.1488 0.5384 2.5436 27 1 3.2854 -0.9402 3.6506 28 1 1.8323 -1.9683 3.6509 29 1 3.3318 1.1064 5.4034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330603203.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:29 Heat of formation + Delta-G solvation = 23.987396 kcal Electronic energy + Delta-G solvation = -14837.024450 eV Core-core repulsion = 12182.152118 eV Total energy + Delta-G solvation = -2654.872332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.38648 -40.53732 -36.22437 -35.73743 -34.34467 -32.97894 -31.86864 -27.68906 -27.14588 -24.35688 -23.97042 -22.86250 -21.18534 -19.48317 -18.33752 -17.79692 -17.35999 -16.60982 -16.30020 -16.12471 -15.32983 -15.02947 -14.60521 -14.39229 -13.99650 -13.39411 -12.96934 -12.78608 -12.68250 -12.58554 -12.19031 -12.08205 -12.00669 -11.68537 -11.01711 -10.75845 -10.49740 -10.14977 -10.05985 -8.14426 -6.24512 0.37494 1.40606 1.42423 1.43860 1.56154 1.74501 1.91815 2.39230 2.59097 3.15982 3.34289 3.63974 3.97735 4.27169 4.33569 4.65741 4.71184 4.76915 4.94433 5.03207 5.10567 5.45793 5.51146 5.76065 5.86774 5.94909 6.22143 6.67433 6.86380 7.33320 7.40373 7.51151 8.91413 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.064322 B = 0.005515 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.205515 B = 5075.695581 C = 5271.673692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.022 3.978 3 H 0.042 0.958 4 C -0.527 4.527 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.528 3.472 13 O -0.579 6.579 14 N -0.725 5.725 15 C 0.197 3.803 16 C -0.015 4.015 17 C -0.029 4.029 18 N -0.299 5.299 19 N -0.094 5.094 20 N -0.365 5.365 21 H 0.463 0.537 22 H 0.067 0.933 23 H 0.026 0.974 24 H 0.050 0.950 25 H 0.264 0.736 26 H 0.409 0.591 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -1.091 12.539 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.000 4.000 3 H 0.060 0.940 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.457 6.457 14 N -0.380 5.380 15 C 0.072 3.928 16 C -0.150 4.150 17 C -0.187 4.187 18 N -0.165 5.165 19 N -0.074 5.074 20 N -0.089 5.089 21 H 0.312 0.688 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.244 0.756 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.482 -1.113 13.601 13.727 hybrid contribution 0.209 -0.717 -1.956 2.093 sum -1.273 -1.829 11.646 11.857 Atomic orbital electron populations 1.21558 0.95138 0.99532 1.01585 1.18829 0.95292 0.96100 0.89736 0.94002 1.21350 1.31401 1.12714 0.91032 0.92991 1.25587 0.95246 0.95728 1.01475 1.69957 1.37388 1.23642 1.24198 0.85568 0.78291 0.78651 0.79532 1.20187 1.20188 1.20228 1.21410 0.78116 0.83601 0.85123 1.90539 1.39528 1.28343 1.87328 1.46064 1.54856 1.32755 1.04341 1.19615 1.00544 0.94945 0.77729 1.22147 0.88633 1.03831 1.00409 1.23986 1.03178 0.98153 0.93385 1.75135 0.98979 1.20296 1.22085 1.78260 1.18636 1.04003 1.06523 1.45184 1.15044 1.29655 1.19048 0.68830 0.91378 0.95512 0.93135 0.92697 0.75550 0.88032 0.89602 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.87 71.98 0.64 -4.47 15 2 C 0.02 1.02 2.64 -12.29 -0.03 0.99 15 3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 15 4 C -0.53 -29.18 8.37 25.60 0.21 -28.97 15 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 15 6 C 0.02 1.01 5.30 84.66 0.45 1.46 15 7 N -0.91 -49.99 11.32 21.45 0.24 -49.75 15 8 Si 0.95 43.69 29.54 68.60 2.03 45.72 15 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 12 C 0.53 21.55 7.15 87.66 0.63 22.18 15 13 O -0.58 -27.70 15.46 -3.05 -0.05 -27.75 15 14 N -0.73 -20.28 5.44 -466.78 -2.54 -22.82 15 15 C 0.20 4.19 6.24 85.63 0.53 4.73 15 16 C -0.02 -0.29 6.67 41.35 0.28 -0.01 15 17 C -0.03 -0.57 11.99 83.73 1.00 0.43 15 18 N -0.30 -7.55 12.41 -58.26 -0.72 -8.27 15 19 N -0.09 -2.20 13.38 37.02 0.50 -1.71 15 20 N -0.36 -6.37 6.98 -47.79 -0.33 -6.70 15 21 H 0.46 5.09 8.96 -219.96 -1.97 3.12 15 22 H 0.07 3.29 6.07 -2.39 -0.01 3.28 15 23 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 24 H 0.05 1.69 7.56 -2.38 -0.02 1.68 15 25 H 0.26 13.72 8.31 -92.71 -0.77 12.95 15 26 H 0.41 9.99 7.88 -92.71 -0.73 9.26 15 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 29 H 0.22 3.11 8.06 -2.91 -0.02 3.09 15 Total: -1.00 -68.08 259.24 1.33 -66.75 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.51 Total: 8.20 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 3.71 Total: -3.67 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.86 Total: -89.25 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.08 1.33 -66.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330603203.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.741 kcal (2) G-P(sol) polarization free energy of solvation -68.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds