Wall clock time and date at job start Mon Mar 30 2020 03:39:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08993 * 109.47366 * 2 1
4 4 C 1.50700 * 109.47107 * 239.99938 * 2 1 3
5 5 H 1.08004 * 120.00333 * 240.00360 * 4 2 1
6 6 C 1.37880 * 119.99863 * 60.00087 * 4 2 1
7 7 N 1.31512 * 119.99782 * 0.02562 * 6 4 2
8 8 Si 1.86796 * 120.00040 * 179.97438 * 6 4 2
9 9 H 1.48509 * 109.47242 * 0.02562 * 8 6 4
10 10 H 1.48504 * 109.47304 * 119.99893 * 8 6 4
11 11 H 1.48499 * 109.47484 * 240.00553 * 8 6 4
12 12 C 1.50700 * 109.46772 * 120.00497 * 2 1 3
13 13 O 1.21286 * 120.00259 * 120.00020 * 12 2 1
14 14 N 1.34783 * 120.00078 * 299.99467 * 12 2 1
15 15 C 1.46500 * 119.99901 * 180.02562 * 14 12 2
16 16 C 1.50700 * 109.46671 * 180.02562 * 15 14 12
17 17 C 1.35349 * 126.91313 * 265.03885 * 16 15 14
18 18 N 1.33777 * 106.49799 * 179.97438 * 17 16 15
19 19 N 1.28634 * 108.88349 * 359.97438 * 18 17 16
20 20 N 1.28715 * 110.18090 * 359.97438 * 19 18 17
21 21 H 0.97000 * 125.86568 * 180.02562 * 20 19 18
22 22 H 1.09003 * 109.46872 * 59.99445 * 1 2 3
23 23 H 1.08993 * 109.47366 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.46855 * 300.00154 * 1 2 3
25 25 H 0.97000 * 119.99623 * 179.97438 * 7 6 4
26 26 H 0.96995 * 119.99539 * 0.02562 * 14 12 2
27 27 H 1.08993 * 109.47517 * 60.00320 * 15 14 12
28 28 H 1.09001 * 109.47122 * 299.99518 * 15 14 12
29 29 H 1.07997 * 126.75241 * 359.94788 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5886 -1.1314
6 6 1.6993 -0.2393 -2.4827
7 7 0.9436 0.8302 -2.6033
8 14 2.3225 -1.1195 -4.0079
9 1 3.1474 -2.2864 -3.6038
10 1 1.1678 -1.5866 -4.8165
11 1 3.1473 -0.1858 -4.8160
12 6 2.0323 -0.7105 1.2304
13 8 2.7295 -1.6967 1.1191
14 7 1.7067 -0.2501 2.4546
15 6 2.1954 -0.9405 3.6507
16 6 1.6925 -0.2305 4.8812
17 6 2.3452 0.7132 5.5991
18 7 1.5282 1.0625 6.5991
19 7 0.4413 0.3807 6.5061
20 7 0.4967 -0.4067 5.4894
21 1 -0.1991 -1.0213 5.2081
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 0.7096 1.1618 -3.4843
26 1 1.1488 0.5384 2.5436
27 1 3.2854 -0.9402 3.6506
28 1 1.8323 -1.9683 3.6509
29 1 3.3318 1.1064 5.4034
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330603203.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:29
Heat of formation + Delta-G solvation = 23.987396 kcal
Electronic energy + Delta-G solvation = -14837.024450 eV
Core-core repulsion = 12182.152118 eV
Total energy + Delta-G solvation = -2654.872332 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.101 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-44.38648 -40.53732 -36.22437 -35.73743 -34.34467 -32.97894 -31.86864 -27.68906
-27.14588 -24.35688 -23.97042 -22.86250 -21.18534 -19.48317 -18.33752 -17.79692
-17.35999 -16.60982 -16.30020 -16.12471 -15.32983 -15.02947 -14.60521 -14.39229
-13.99650 -13.39411 -12.96934 -12.78608 -12.68250 -12.58554 -12.19031 -12.08205
-12.00669 -11.68537 -11.01711 -10.75845 -10.49740 -10.14977 -10.05985 -8.14426
-6.24512 0.37494 1.40606 1.42423 1.43860 1.56154 1.74501 1.91815
2.39230 2.59097 3.15982 3.34289 3.63974 3.97735 4.27169 4.33569
4.65741 4.71184 4.76915 4.94433 5.03207 5.10567 5.45793 5.51146
5.76065 5.86774 5.94909 6.22143 6.67433 6.86380 7.33320 7.40373
7.51151 8.91413
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.064322 B = 0.005515 C = 0.005310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 435.205515 B = 5075.695581 C = 5271.673692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.022 3.978
3 H 0.042 0.958
4 C -0.527 4.527
5 H 0.052 0.948
6 C 0.019 3.981
7 N -0.912 5.912
8 Si 0.953 3.047
9 H -0.277 1.277
10 H -0.276 1.276
11 H -0.277 1.277
12 C 0.528 3.472
13 O -0.579 6.579
14 N -0.725 5.725
15 C 0.197 3.803
16 C -0.015 4.015
17 C -0.029 4.029
18 N -0.299 5.299
19 N -0.094 5.094
20 N -0.365 5.365
21 H 0.463 0.537
22 H 0.067 0.933
23 H 0.026 0.974
24 H 0.050 0.950
25 H 0.264 0.736
26 H 0.409 0.591
27 H 0.102 0.898
28 H 0.086 0.914
29 H 0.216 0.784
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.138 -1.091 12.539 12.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.000 4.000
3 H 0.060 0.940
4 C -0.565 4.565
5 H 0.070 0.930
6 C -0.180 4.180
7 N -0.552 5.552
8 Si 0.780 3.220
9 H -0.202 1.202
10 H -0.202 1.202
11 H -0.202 1.202
12 C 0.318 3.682
13 O -0.457 6.457
14 N -0.380 5.380
15 C 0.072 3.928
16 C -0.150 4.150
17 C -0.187 4.187
18 N -0.165 5.165
19 N -0.074 5.074
20 N -0.089 5.089
21 H 0.312 0.688
22 H 0.086 0.914
23 H 0.045 0.955
24 H 0.069 0.931
25 H 0.073 0.927
26 H 0.244 0.756
27 H 0.120 0.880
28 H 0.104 0.896
29 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges -1.482 -1.113 13.601 13.727
hybrid contribution 0.209 -0.717 -1.956 2.093
sum -1.273 -1.829 11.646 11.857
Atomic orbital electron populations
1.21558 0.95138 0.99532 1.01585 1.18829 0.95292 0.96100 0.89736
0.94002 1.21350 1.31401 1.12714 0.91032 0.92991 1.25587 0.95246
0.95728 1.01475 1.69957 1.37388 1.23642 1.24198 0.85568 0.78291
0.78651 0.79532 1.20187 1.20188 1.20228 1.21410 0.78116 0.83601
0.85123 1.90539 1.39528 1.28343 1.87328 1.46064 1.54856 1.32755
1.04341 1.19615 1.00544 0.94945 0.77729 1.22147 0.88633 1.03831
1.00409 1.23986 1.03178 0.98153 0.93385 1.75135 0.98979 1.20296
1.22085 1.78260 1.18636 1.04003 1.06523 1.45184 1.15044 1.29655
1.19048 0.68830 0.91378 0.95512 0.93135 0.92697 0.75550 0.88032
0.89602 0.76730
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.11 8.87 71.98 0.64 -4.47 15
2 C 0.02 1.02 2.64 -12.29 -0.03 0.99 15
3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 15
4 C -0.53 -29.18 8.37 25.60 0.21 -28.97 15
5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 15
6 C 0.02 1.01 5.30 84.66 0.45 1.46 15
7 N -0.91 -49.99 11.32 21.45 0.24 -49.75 15
8 Si 0.95 43.69 29.54 68.60 2.03 45.72 15
9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15
10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15
11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15
12 C 0.53 21.55 7.15 87.66 0.63 22.18 15
13 O -0.58 -27.70 15.46 -3.05 -0.05 -27.75 15
14 N -0.73 -20.28 5.44 -466.78 -2.54 -22.82 15
15 C 0.20 4.19 6.24 85.63 0.53 4.73 15
16 C -0.02 -0.29 6.67 41.35 0.28 -0.01 15
17 C -0.03 -0.57 11.99 83.73 1.00 0.43 15
18 N -0.30 -7.55 12.41 -58.26 -0.72 -8.27 15
19 N -0.09 -2.20 13.38 37.02 0.50 -1.71 15
20 N -0.36 -6.37 6.98 -47.79 -0.33 -6.70 15
21 H 0.46 5.09 8.96 -219.96 -1.97 3.12 15
22 H 0.07 3.29 6.07 -2.39 -0.01 3.28 15
23 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15
24 H 0.05 1.69 7.56 -2.38 -0.02 1.68 15
25 H 0.26 13.72 8.31 -92.71 -0.77 12.95 15
26 H 0.41 9.99 7.88 -92.71 -0.73 9.26 15
27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15
28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15
29 H 0.22 3.11 8.06 -2.91 -0.02 3.09 15
Total: -1.00 -68.08 259.24 1.33 -66.75
By element:
Atomic # 1 Polarization: 9.71 SS G_CDS: -1.51 Total: 8.20 kcal
Atomic # 6 Polarization: -7.38 SS G_CDS: 3.71 Total: -3.67 kcal
Atomic # 7 Polarization: -86.40 SS G_CDS: -2.86 Total: -89.25 kcal
Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -68.08 1.33 -66.75 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330603203.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.741 kcal
(2) G-P(sol) polarization free energy of solvation -68.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds