Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 C 1.50703 * 109.47292 * 239.99573 * 2 1 3 5 5 C 1.38244 * 119.96983 * 299.72140 * 4 2 1 6 6 C 1.38199 * 120.01900 * 179.76777 * 5 4 2 7 7 C 1.38460 * 119.97829 * 0.50510 * 6 5 4 8 8 F 1.35100 * 120.03079 * 179.76794 * 7 6 5 9 9 C 1.38456 * 119.94552 * 359.75224 * 7 6 5 10 10 C 1.38203 * 119.97772 * 359.97438 * 9 7 6 11 11 C 1.53006 * 109.46974 * 119.99555 * 2 1 3 12 12 H 1.08993 * 109.46955 * 59.99927 * 11 2 1 13 13 O 1.42906 * 109.46752 * 180.02562 * 11 2 1 14 14 C 1.50698 * 109.47184 * 299.99768 * 11 2 1 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 11 2 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 2 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 300.00053 * 1 2 3 24 24 H 1.08992 * 109.47060 * 60.00537 * 1 2 3 25 25 H 1.07993 * 119.99026 * 0.02562 * 5 4 2 26 26 H 1.08007 * 120.01476 * 180.26173 * 6 5 4 27 27 H 1.08001 * 120.01388 * 179.97438 * 9 7 6 28 28 H 1.07996 * 119.99155 * 180.02562 * 10 9 7 29 29 H 0.96696 * 113.99911 * 59.99724 * 13 11 2 30 30 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7028 -2.0357 -1.4456 6 6 2.1590 -2.6869 -2.5760 7 6 2.9550 -2.0146 -3.4878 8 9 3.4054 -2.6515 -4.5909 9 6 3.2888 -0.6889 -3.2685 10 6 2.8268 -0.0380 -2.1403 11 6 2.0400 -0.7212 1.2494 12 1 1.6767 -1.7488 1.2494 13 8 3.4691 -0.7206 1.2496 14 6 1.5377 -0.0107 2.4797 15 1 0.9165 0.8672 2.3805 16 6 1.8703 -0.4819 3.7320 17 7 2.6264 -1.5512 3.8528 18 14 1.2471 0.3984 5.2572 19 1 1.7422 -0.3015 6.4698 20 1 -0.2379 0.3984 5.2567 21 1 1.7420 1.7985 5.2576 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.0853 -2.5611 -0.7322 26 1 1.8980 -3.7210 -2.7461 27 1 3.9099 -0.1635 -3.9789 28 1 3.0867 0.9961 -1.9692 29 1 3.8620 0.1629 1.2497 30 1 2.9497 -2.0086 3.0609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535746824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -92.995987 kcal Electronic energy + Delta-G solvation = -15144.048217 eV Core-core repulsion = 12431.890392 eV Total energy + Delta-G solvation = -2712.157825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.68120 -39.15692 -36.37076 -33.00770 -32.14443 -30.88707 -28.83187 -25.85012 -23.77078 -22.91572 -21.92600 -19.73309 -17.54275 -17.26800 -16.06765 -15.61705 -15.37242 -14.62281 -14.19382 -13.82787 -13.46650 -13.24545 -13.14733 -12.92229 -12.40955 -12.12558 -11.55503 -11.40650 -10.99313 -10.80731 -10.59283 -10.45972 -10.13194 -10.08232 -9.23999 -8.84480 -8.48527 -8.30225 -7.90238 -6.36024 -4.19998 1.46554 1.50116 3.40480 3.41136 3.60534 3.89641 4.49031 4.49914 4.94624 5.07172 5.21385 5.32364 5.53583 5.59094 5.77841 5.85124 5.99249 6.15250 6.27136 6.34285 6.41034 6.49426 6.53777 6.68638 6.84453 6.96264 7.18661 7.47229 7.98155 8.33443 8.84097 9.08825 9.65342 11.03230 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.053801 B = 0.006681 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.314114 B = 4190.112820 C = 4319.368602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 H 0.069 0.931 4 C -0.054 4.054 5 C -0.085 4.085 6 C -0.151 4.151 7 C 0.074 3.926 8 F -0.149 7.149 9 C -0.153 4.153 10 C -0.095 4.095 11 C 0.222 3.778 12 H 0.050 0.950 13 O -0.580 6.580 14 C -0.647 4.647 15 H 0.052 0.948 16 C 0.034 3.966 17 N -0.893 5.893 18 Si 1.065 2.935 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.352 0.648 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 2.149 -11.006 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.054 4.054 5 C -0.103 4.103 6 C -0.170 4.170 7 C 0.055 3.945 8 F -0.128 7.128 9 C -0.172 4.172 10 C -0.113 4.113 11 C 0.165 3.835 12 H 0.067 0.933 13 O -0.384 6.384 14 C -0.684 4.684 15 H 0.070 0.930 16 C -0.175 4.175 17 N -0.527 5.527 18 Si 0.893 3.107 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.056 0.944 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.197 0.803 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.866 1.411 -9.409 9.695 hybrid contribution 0.117 0.536 -1.914 1.991 sum -1.749 1.947 -11.323 11.622 Atomic orbital electron populations 1.21669 0.94337 1.01483 1.01049 1.20971 0.96298 0.99187 0.93225 0.91273 1.20233 0.95368 0.94079 0.95708 1.20903 0.99123 0.94330 0.95906 1.21074 1.00080 1.00648 0.95203 1.17634 0.99908 0.91651 0.85303 1.91447 1.87847 1.82145 1.51368 1.21025 1.03038 0.93339 0.99784 1.20919 0.97239 1.00002 0.93158 1.19598 0.78352 0.95661 0.89845 0.93276 1.86494 1.22719 1.32154 1.97062 1.22448 1.37335 1.16065 0.92596 0.92961 1.25767 0.94457 0.96128 1.01177 1.70638 1.29873 1.17152 1.35053 0.83627 0.75893 0.75392 0.75790 1.20803 1.21456 1.21466 0.93253 0.90994 0.94383 0.85233 0.85303 0.85410 0.85516 0.80288 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.76 37.16 0.33 -1.94 16 2 C -0.08 -1.49 2.30 -91.77 -0.21 -1.70 16 3 H 0.07 1.30 7.87 -51.93 -0.41 0.89 16 4 C -0.05 -0.94 4.43 -104.62 -0.46 -1.40 16 5 C -0.08 -1.43 8.71 -39.59 -0.34 -1.78 16 6 C -0.15 -2.34 10.03 -39.51 -0.40 -2.74 16 7 C 0.07 1.15 7.30 -39.42 -0.29 0.86 16 8 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 9 C -0.15 -2.24 10.03 -39.51 -0.40 -2.64 16 10 C -0.10 -1.48 9.67 -39.59 -0.38 -1.86 16 11 C 0.22 5.29 1.83 -27.88 -0.05 5.24 16 12 H 0.05 1.28 7.24 -51.93 -0.38 0.90 16 13 O -0.58 -14.20 11.64 -35.23 -0.41 -14.61 16 14 C -0.65 -17.04 8.03 -34.44 -0.28 -17.31 16 15 H 0.05 1.35 6.71 -52.48 -0.35 0.99 16 16 C 0.03 0.93 5.40 -17.82 -0.10 0.83 16 17 N -0.89 -26.74 13.53 55.43 0.75 -25.99 16 18 Si 1.06 24.34 29.90 -169.99 -5.08 19.26 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.05 0.85 7.40 -51.93 -0.38 0.47 16 23 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.13 2.16 7.10 -52.49 -0.37 1.79 16 26 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 1.72 7.94 -52.49 -0.42 1.30 16 29 H 0.35 7.75 9.04 45.56 0.41 8.16 16 30 H 0.28 8.67 6.47 -40.82 -0.26 8.41 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -29.62 260.79 -5.93 -35.55 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.57 Total: 8.54 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -2.58 Total: -24.44 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.99 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.41 Total: -14.61 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.62 -5.93 -35.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535746824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.445 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds