Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 C 1.50703 * 109.47292 * 239.99573 * 2 1 3 5 5 C 1.38244 * 119.96983 * 299.72140 * 4 2 1 6 6 C 1.38199 * 120.01900 * 179.76777 * 5 4 2 7 7 C 1.38460 * 119.97829 * 0.50510 * 6 5 4 8 8 F 1.35100 * 120.03079 * 179.76794 * 7 6 5 9 9 C 1.38456 * 119.94552 * 359.75224 * 7 6 5 10 10 C 1.38203 * 119.97772 * 359.97438 * 9 7 6 11 11 C 1.53006 * 109.46974 * 119.99555 * 2 1 3 12 12 H 1.08993 * 109.46955 * 59.99927 * 11 2 1 13 13 O 1.42906 * 109.46752 * 180.02562 * 11 2 1 14 14 C 1.50698 * 109.47184 * 299.99768 * 11 2 1 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 11 2 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 2 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 300.00053 * 1 2 3 24 24 H 1.08992 * 109.47060 * 60.00537 * 1 2 3 25 25 H 1.07993 * 119.99026 * 0.02562 * 5 4 2 26 26 H 1.08007 * 120.01476 * 180.26173 * 6 5 4 27 27 H 1.08001 * 120.01388 * 179.97438 * 9 7 6 28 28 H 1.07996 * 119.99155 * 180.02562 * 10 9 7 29 29 H 0.96696 * 113.99911 * 59.99724 * 13 11 2 30 30 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7028 -2.0357 -1.4456 6 6 2.1590 -2.6869 -2.5760 7 6 2.9550 -2.0146 -3.4878 8 9 3.4054 -2.6515 -4.5909 9 6 3.2888 -0.6889 -3.2685 10 6 2.8268 -0.0380 -2.1403 11 6 2.0400 -0.7212 1.2494 12 1 1.6767 -1.7488 1.2494 13 8 3.4691 -0.7206 1.2496 14 6 1.5377 -0.0107 2.4797 15 1 0.9165 0.8672 2.3805 16 6 1.8703 -0.4819 3.7320 17 7 2.6264 -1.5512 3.8528 18 14 1.2471 0.3984 5.2572 19 1 1.7422 -0.3015 6.4698 20 1 -0.2379 0.3984 5.2567 21 1 1.7420 1.7985 5.2576 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.0853 -2.5611 -0.7322 26 1 1.8980 -3.7210 -2.7461 27 1 3.9099 -0.1635 -3.9789 28 1 3.0867 0.9961 -1.9692 29 1 3.8620 0.1629 1.2497 30 1 2.9497 -2.0086 3.0609 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535746824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -111.332916 kcal Electronic energy + Delta-G solvation = -15144.843366 eV Core-core repulsion = 12431.890392 eV Total energy + Delta-G solvation = -2712.952974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.88495 -40.49968 -38.11067 -34.59968 -34.23293 -32.09791 -30.21638 -27.73456 -25.43755 -24.24463 -23.44704 -21.24014 -19.36704 -18.65082 -17.44319 -17.21694 -16.58126 -16.16449 -15.71755 -15.59521 -14.98517 -14.88141 -14.43908 -14.28210 -14.11007 -13.57856 -13.08388 -13.01035 -12.59653 -12.35625 -12.14403 -11.99089 -11.92284 -11.77011 -11.03406 -10.57451 -10.07718 -10.03793 -9.40314 -8.53850 -6.38419 0.20388 0.29167 1.55984 1.62853 1.81570 2.58893 2.65479 3.22543 3.28652 3.73002 3.80620 3.96917 4.08542 4.18888 4.35892 4.46931 4.53353 4.70616 4.96057 5.06286 5.08865 5.09360 5.14576 5.25916 5.39154 5.47977 5.76882 5.92183 5.99133 6.22315 6.62892 7.22774 7.57082 8.82820 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.053801 B = 0.006681 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.314114 B = 4190.112820 C = 4319.368602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 H 0.076 0.924 4 C -0.072 4.072 5 C -0.100 4.100 6 C -0.153 4.153 7 C 0.068 3.932 8 F -0.147 7.147 9 C -0.147 4.147 10 C -0.094 4.094 11 C 0.222 3.778 12 H 0.019 0.981 13 O -0.593 6.593 14 C -0.646 4.646 15 H 0.058 0.942 16 C -0.021 4.021 17 N -0.927 5.927 18 Si 1.112 2.888 19 H -0.291 1.291 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.149 0.851 29 H 0.362 0.638 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 3.563 -12.101 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.085 4.085 3 H 0.094 0.906 4 C -0.072 4.072 5 C -0.119 4.119 6 C -0.172 4.172 7 C 0.049 3.951 8 F -0.126 7.126 9 C -0.165 4.165 10 C -0.112 4.112 11 C 0.165 3.835 12 H 0.036 0.964 13 O -0.399 6.399 14 C -0.684 4.684 15 H 0.076 0.924 16 C -0.222 4.222 17 N -0.563 5.563 18 Si 0.934 3.066 19 H -0.217 1.217 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.164 0.836 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.208 0.792 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.105 2.841 -10.530 11.108 hybrid contribution 0.207 0.076 -1.671 1.685 sum -1.899 2.918 -12.201 12.688 Atomic orbital electron populations 1.21627 0.93420 1.01485 1.01649 1.20715 0.97068 0.98868 0.91851 0.90597 1.20154 0.96875 0.94406 0.95795 1.20928 0.99841 0.94562 0.96518 1.21240 0.99776 1.01553 0.94643 1.17807 0.99824 0.92182 0.85283 1.91455 1.87774 1.82189 1.51192 1.21330 1.02446 0.92971 0.99781 1.21142 0.96268 1.01007 0.92797 1.19478 0.78054 0.94348 0.91588 0.96368 1.86445 1.23116 1.33069 1.97237 1.22850 1.36263 1.15759 0.93525 0.92363 1.27204 0.94062 0.96018 1.04915 1.70783 1.32509 1.18986 1.34067 0.83014 0.76432 0.75080 0.72074 1.21707 1.19530 1.19440 0.93615 0.92426 0.91598 0.86136 0.83565 0.82488 0.83348 0.79196 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.76 71.98 0.63 -3.64 16 2 C -0.07 -2.48 2.30 -11.54 -0.03 -2.50 16 3 H 0.08 2.71 7.87 -2.39 -0.02 2.69 16 4 C -0.07 -2.43 4.43 -19.86 -0.09 -2.52 16 5 C -0.10 -3.36 8.71 22.26 0.19 -3.17 16 6 C -0.15 -4.56 10.03 22.31 0.22 -4.34 16 7 C 0.07 1.96 7.30 22.37 0.16 2.13 16 8 F -0.15 -4.16 17.27 44.97 0.78 -3.38 16 9 C -0.15 -3.86 10.03 22.31 0.22 -3.64 16 10 C -0.09 -2.68 9.67 22.26 0.22 -2.47 16 11 C 0.22 10.69 1.83 29.85 0.05 10.74 16 12 H 0.02 1.00 7.24 -2.39 -0.02 0.98 16 13 O -0.59 -29.36 11.64 -148.98 -1.73 -31.09 16 14 C -0.65 -34.02 8.03 25.60 0.21 -33.81 16 15 H 0.06 2.94 6.71 -2.91 -0.02 2.93 16 16 C -0.02 -1.14 5.40 84.65 0.46 -0.68 16 17 N -0.93 -56.75 13.53 21.45 0.29 -56.46 16 18 Si 1.11 48.60 29.90 68.60 2.05 50.65 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 H 0.04 1.57 7.40 -2.38 -0.02 1.55 16 23 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.12 4.15 7.10 -2.91 -0.02 4.13 16 26 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.15 3.51 7.94 -2.91 -0.02 3.49 16 29 H 0.36 15.88 9.04 -74.06 -0.67 15.21 16 30 H 0.27 16.86 6.47 -92.71 -0.60 16.26 16 Total: -1.00 -63.20 260.79 4.29 -58.91 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.65 Total: 25.28 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 2.25 Total: -43.90 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.29 Total: -56.46 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.73 Total: -31.09 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Total: -63.20 4.29 -58.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535746824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.426 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds