Wall clock time and date at job start Mon Mar 30 2020 03:00:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13602 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47394 * 292.47630 * 3 2 1
5 5 C 1.36936 * 119.99833 * 96.69685 * 4 3 2
6 6 H 1.07998 * 120.00188 * 152.05809 * 5 4 3
7 7 C 1.38813 * 120.00027 * 332.05543 * 5 4 3
8 8 N 1.31627 * 119.99933 * 352.22571 * 7 5 4
9 9 Si 1.86800 * 120.00170 * 172.22965 * 7 5 4
10 10 H 1.48493 * 109.47397 * 89.99876 * 9 7 5
11 11 H 1.48503 * 109.46831 * 210.00214 * 9 7 5
12 12 H 1.48504 * 109.46990 * 329.99751 * 9 7 5
13 13 C 1.46496 * 120.00034 * 276.69605 * 4 3 2
14 14 H 1.09005 * 109.47429 * 300.62887 * 13 4 3
15 15 C 1.52997 * 109.47263 * 60.63156 * 13 4 3
16 16 C 1.53001 * 109.47287 * 59.99998 * 15 13 4
17 17 C 1.53004 * 109.47114 * 59.99991 * 16 15 13
18 18 C 1.53005 * 109.47024 * 299.99963 * 17 16 15
19 19 C 1.53001 * 109.46789 * 60.00176 * 18 17 16
20 20 H 1.09001 * 109.47037 * 59.99952 * 19 18 17
21 21 O 1.42908 * 109.46895 * 179.97438 * 19 18 17
22 22 H 1.09004 * 109.46895 * 172.47966 * 3 2 1
23 23 H 1.09004 * 109.47512 * 52.47989 * 3 2 1
24 24 H 0.97001 * 119.99654 * 180.02562 * 8 7 5
25 25 H 1.09001 * 109.47201 * 179.97438 * 15 13 4
26 26 H 1.09001 * 109.47101 * 299.99867 * 15 13 4
27 27 H 1.08999 * 109.47216 * 179.97438 * 16 15 13
28 28 H 1.09001 * 109.46762 * 299.99978 * 16 15 13
29 29 H 1.08998 * 109.46860 * 60.00156 * 17 16 15
30 30 H 1.08996 * 109.47105 * 180.02562 * 17 16 15
31 31 H 1.08999 * 109.46628 * 179.97438 * 18 17 16
32 32 H 1.09001 * 109.47370 * 300.00331 * 18 17 16
33 33 H 0.96692 * 113.99879 * 300.00173 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0966 -0.5271 1.2762
5 6 3.4559 -1.8445 1.3798
6 1 4.2009 -2.1460 2.1012
7 6 2.8623 -2.7925 0.5576
8 7 1.8493 -2.4545 -0.2119
9 14 3.5011 -4.5478 0.5434
10 1 2.7791 -5.3457 1.5666
11 1 3.2780 -5.1448 -0.7980
12 1 4.9541 -4.5482 0.8499
13 6 3.2010 0.3544 2.4417
14 1 3.8747 1.1803 2.2134
15 6 1.8170 0.9062 2.7893
16 6 0.8714 -0.2531 3.1098
17 6 1.4188 -1.0437 4.2998
18 6 2.8028 -1.5956 3.9522
19 6 3.7484 -0.4363 3.6317
20 1 3.8260 0.2196 4.4989
21 8 5.0413 -0.9517 3.3076
22 1 2.9709 1.0197 -0.1345
23 1 2.9717 -0.6251 -0.8151
24 1 1.4344 -3.1170 -0.7861
25 1 1.8945 1.5617 3.6567
26 1 1.4270 1.4695 1.9414
27 1 -0.1145 0.1401 3.3578
28 1 0.7937 -0.9089 2.2426
29 1 1.4964 -0.3878 5.1669
30 1 0.7454 -1.8699 4.5279
31 1 3.1930 -2.1585 4.8002
32 1 2.7252 -2.2515 3.0850
33 1 5.4495 -1.4648 4.0182
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000037693553.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:58
Heat of formation + Delta-G solvation = -12.913131 kcal
Electronic energy + Delta-G solvation = -16890.571647 eV
Core-core repulsion = 14337.639531 eV
Total energy + Delta-G solvation = -2552.932116 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.58742 -37.24956 -36.03147 -35.53918 -33.15320 -30.82448 -30.04662 -28.14657
-25.13820 -23.15619 -22.48576 -20.19189 -19.12311 -17.96827 -17.61971 -16.64859
-16.25440 -15.59166 -15.39132 -14.76652 -14.51576 -14.16215 -13.88752 -13.54013
-13.44083 -13.02100 -12.80958 -12.75971 -12.60625 -12.40267 -12.22484 -12.04836
-11.90490 -11.56782 -11.31248 -11.18376 -10.62384 -10.49785 -10.03124 -8.61420
-7.73894 -5.15065 1.51676 1.56876 1.62841 2.44169 2.63796 2.75459
3.46348 3.57816 3.75987 4.01406 4.06158 4.22156 4.32541 4.57216
4.59790 4.68787 4.78195 4.83528 4.93321 5.03403 5.07763 5.17470
5.37125 5.40420 5.51407 5.58115 5.69489 5.95501 6.08129 6.53955
7.16336 7.32066 7.50702 7.94822 8.39572 9.32522
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.021859 B = 0.016910 C = 0.012462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.657698 B = 1655.442299 C = 2246.203165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C 0.272 3.728
3 C 0.257 3.743
4 N -0.581 5.581
5 C -0.216 4.216
6 H 0.117 0.883
7 C -0.058 4.058
8 N -0.939 5.939
9 Si 0.950 3.050
10 H -0.300 1.300
11 H -0.309 1.309
12 H -0.266 1.266
13 C 0.170 3.830
14 H 0.057 0.943
15 C -0.124 4.124
16 C -0.114 4.114
17 C -0.100 4.100
18 C -0.177 4.177
19 C 0.126 3.874
20 H 0.071 0.929
21 O -0.563 6.563
22 H 0.090 0.910
23 H 0.091 0.909
24 H 0.239 0.761
25 H 0.081 0.919
26 H 0.044 0.956
27 H 0.034 0.966
28 H 0.047 0.953
29 H 0.072 0.928
30 H 0.042 0.958
31 H 0.063 0.937
32 H 0.094 0.906
33 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.252 5.106 8.745 11.901
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.235 5.235
2 C -0.045 4.045
3 C 0.127 3.873
4 N -0.302 5.302
5 C -0.345 4.345
6 H 0.134 0.866
7 C -0.252 4.252
8 N -0.588 5.588
9 Si 0.782 3.218
10 H -0.228 1.228
11 H -0.236 1.236
12 H -0.190 1.190
13 C 0.064 3.936
14 H 0.074 0.926
15 C -0.163 4.163
16 C -0.152 4.152
17 C -0.137 4.137
18 C -0.214 4.214
19 C 0.068 3.932
20 H 0.089 0.911
21 O -0.369 6.369
22 H 0.108 0.892
23 H 0.109 0.891
24 H 0.049 0.951
25 H 0.099 0.901
26 H 0.063 0.937
27 H 0.052 0.948
28 H 0.065 0.935
29 H 0.090 0.910
30 H 0.061 0.939
31 H 0.082 0.918
32 H 0.112 0.888
33 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges 4.451 5.303 8.103 10.658
hybrid contribution 0.017 -1.719 0.012 1.720
sum 4.468 3.584 8.115 9.933
Atomic orbital electron populations
1.80787 1.15598 1.15447 1.11638 1.30788 0.96636 0.87354 0.89772
1.18305 0.79406 0.98496 0.91104 1.44110 1.73745 1.07529 1.04818
1.20215 1.14363 0.82671 1.17274 0.86572 1.25674 0.97362 1.00384
1.01745 1.69848 1.25024 1.33245 1.30638 0.85492 0.78482 0.82336
0.75480 1.22757 1.23629 1.19047 1.20771 0.93725 0.92332 0.86783
0.92550 1.21949 0.96425 0.97161 1.00781 1.21398 0.96858 0.97911
0.99004 1.21301 0.96514 0.98705 0.97199 1.22802 0.95169 1.00246
1.03191 1.21613 0.82413 0.93786 0.95428 0.91144 1.86653 1.31971
1.73325 1.44999 0.89242 0.89118 0.95111 0.90064 0.93705 0.94762
0.93454 0.90976 0.93937 0.91836 0.88777 0.77143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.55 -28.28 18.24 20.01 0.36 -27.91 16
2 C 0.27 12.86 9.44 89.44 0.84 13.71 16
3 C 0.26 10.88 5.22 84.57 0.44 11.32 16
4 N -0.58 -24.62 2.00 -688.51 -1.37 -25.99 16
5 C -0.22 -10.03 5.78 84.03 0.49 -9.55 16
6 H 0.12 5.23 4.27 -2.91 -0.01 5.22 16
7 C -0.06 -2.97 5.10 84.86 0.43 -2.54 16
8 N -0.94 -51.67 9.17 21.65 0.20 -51.47 16
9 Si 0.95 43.14 29.56 68.60 2.03 45.17 16
10 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16
11 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16
12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16
13 C 0.17 5.93 3.00 44.99 0.14 6.07 16
14 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16
15 C -0.12 -4.19 4.90 30.59 0.15 -4.04 16
16 C -0.11 -4.42 5.45 30.60 0.17 -4.25 16
17 C -0.10 -3.30 5.92 30.60 0.18 -3.12 16
18 C -0.18 -5.95 5.02 30.60 0.15 -5.79 16
19 C 0.13 3.89 3.04 30.60 0.09 3.98 16
20 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16
21 O -0.56 -17.47 10.64 -148.98 -1.58 -19.06 16
22 H 0.09 3.06 8.12 -2.39 -0.02 3.04 16
23 H 0.09 4.23 6.74 -2.39 -0.02 4.21 16
24 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16
25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
26 H 0.04 1.63 6.56 -2.39 -0.02 1.61 16
27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16
28 H 0.05 2.32 5.73 -2.39 -0.01 2.30 16
29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
32 H 0.09 4.05 4.42 -2.39 -0.01 4.04 16
33 H 0.38 8.25 9.08 -74.06 -0.67 7.58 16
Total: -1.00 -61.42 254.02 3.17 -58.25
By element:
Atomic # 1 Polarization: 14.78 SS G_CDS: 0.45 Total: 15.24 kcal
Atomic # 6 Polarization: 2.69 SS G_CDS: 3.08 Total: 5.78 kcal
Atomic # 7 Polarization: -104.56 SS G_CDS: -0.81 Total: -105.37 kcal
Atomic # 8 Polarization: -17.47 SS G_CDS: -1.58 Total: -19.06 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -61.42 3.17 -58.25 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037693553.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.335 kcal
(2) G-P(sol) polarization free energy of solvation -61.417 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds