Wall clock time and date at job start Mon Mar 30 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47394 * 292.47630 * 3 2 1 5 5 C 1.36936 * 119.99833 * 96.69685 * 4 3 2 6 6 H 1.07998 * 120.00188 * 152.05809 * 5 4 3 7 7 C 1.38813 * 120.00027 * 332.05543 * 5 4 3 8 8 N 1.31627 * 119.99933 * 352.22571 * 7 5 4 9 9 Si 1.86800 * 120.00170 * 172.22965 * 7 5 4 10 10 H 1.48493 * 109.47397 * 89.99876 * 9 7 5 11 11 H 1.48503 * 109.46831 * 210.00214 * 9 7 5 12 12 H 1.48504 * 109.46990 * 329.99751 * 9 7 5 13 13 C 1.46496 * 120.00034 * 276.69605 * 4 3 2 14 14 H 1.09005 * 109.47429 * 300.62887 * 13 4 3 15 15 C 1.52997 * 109.47263 * 60.63156 * 13 4 3 16 16 C 1.53001 * 109.47287 * 59.99998 * 15 13 4 17 17 C 1.53004 * 109.47114 * 59.99991 * 16 15 13 18 18 C 1.53005 * 109.47024 * 299.99963 * 17 16 15 19 19 C 1.53001 * 109.46789 * 60.00176 * 18 17 16 20 20 H 1.09001 * 109.47037 * 59.99952 * 19 18 17 21 21 O 1.42908 * 109.46895 * 179.97438 * 19 18 17 22 22 H 1.09004 * 109.46895 * 172.47966 * 3 2 1 23 23 H 1.09004 * 109.47512 * 52.47989 * 3 2 1 24 24 H 0.97001 * 119.99654 * 180.02562 * 8 7 5 25 25 H 1.09001 * 109.47201 * 179.97438 * 15 13 4 26 26 H 1.09001 * 109.47101 * 299.99867 * 15 13 4 27 27 H 1.08999 * 109.47216 * 179.97438 * 16 15 13 28 28 H 1.09001 * 109.46762 * 299.99978 * 16 15 13 29 29 H 1.08998 * 109.46860 * 60.00156 * 17 16 15 30 30 H 1.08996 * 109.47105 * 180.02562 * 17 16 15 31 31 H 1.08999 * 109.46628 * 179.97438 * 18 17 16 32 32 H 1.09001 * 109.47370 * 300.00331 * 18 17 16 33 33 H 0.96692 * 113.99879 * 300.00173 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.5271 1.2762 5 6 3.4559 -1.8445 1.3798 6 1 4.2009 -2.1460 2.1012 7 6 2.8623 -2.7925 0.5576 8 7 1.8493 -2.4545 -0.2119 9 14 3.5011 -4.5478 0.5434 10 1 2.7791 -5.3457 1.5666 11 1 3.2780 -5.1448 -0.7980 12 1 4.9541 -4.5482 0.8499 13 6 3.2010 0.3544 2.4417 14 1 3.8747 1.1803 2.2134 15 6 1.8170 0.9062 2.7893 16 6 0.8714 -0.2531 3.1098 17 6 1.4188 -1.0437 4.2998 18 6 2.8028 -1.5956 3.9522 19 6 3.7484 -0.4363 3.6317 20 1 3.8260 0.2196 4.4989 21 8 5.0413 -0.9517 3.3076 22 1 2.9709 1.0197 -0.1345 23 1 2.9717 -0.6251 -0.8151 24 1 1.4344 -3.1170 -0.7861 25 1 1.8945 1.5617 3.6567 26 1 1.4270 1.4695 1.9414 27 1 -0.1145 0.1401 3.3578 28 1 0.7937 -0.9089 2.2426 29 1 1.4964 -0.3878 5.1669 30 1 0.7454 -1.8699 4.5279 31 1 3.1930 -2.1585 4.8002 32 1 2.7252 -2.2515 3.0850 33 1 5.4495 -1.4648 4.0182 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037693553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:58 Heat of formation + Delta-G solvation = -12.913131 kcal Electronic energy + Delta-G solvation = -16890.571647 eV Core-core repulsion = 14337.639531 eV Total energy + Delta-G solvation = -2552.932116 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58742 -37.24956 -36.03147 -35.53918 -33.15320 -30.82448 -30.04662 -28.14657 -25.13820 -23.15619 -22.48576 -20.19189 -19.12311 -17.96827 -17.61971 -16.64859 -16.25440 -15.59166 -15.39132 -14.76652 -14.51576 -14.16215 -13.88752 -13.54013 -13.44083 -13.02100 -12.80958 -12.75971 -12.60625 -12.40267 -12.22484 -12.04836 -11.90490 -11.56782 -11.31248 -11.18376 -10.62384 -10.49785 -10.03124 -8.61420 -7.73894 -5.15065 1.51676 1.56876 1.62841 2.44169 2.63796 2.75459 3.46348 3.57816 3.75987 4.01406 4.06158 4.22156 4.32541 4.57216 4.59790 4.68787 4.78195 4.83528 4.93321 5.03403 5.07763 5.17470 5.37125 5.40420 5.51407 5.58115 5.69489 5.95501 6.08129 6.53955 7.16336 7.32066 7.50702 7.94822 8.39572 9.32522 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.016910 C = 0.012462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.657698 B = 1655.442299 C = 2246.203165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.272 3.728 3 C 0.257 3.743 4 N -0.581 5.581 5 C -0.216 4.216 6 H 0.117 0.883 7 C -0.058 4.058 8 N -0.939 5.939 9 Si 0.950 3.050 10 H -0.300 1.300 11 H -0.309 1.309 12 H -0.266 1.266 13 C 0.170 3.830 14 H 0.057 0.943 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.177 4.177 19 C 0.126 3.874 20 H 0.071 0.929 21 O -0.563 6.563 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.239 0.761 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 5.106 8.745 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.045 4.045 3 C 0.127 3.873 4 N -0.302 5.302 5 C -0.345 4.345 6 H 0.134 0.866 7 C -0.252 4.252 8 N -0.588 5.588 9 Si 0.782 3.218 10 H -0.228 1.228 11 H -0.236 1.236 12 H -0.190 1.190 13 C 0.064 3.936 14 H 0.074 0.926 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.137 4.137 18 C -0.214 4.214 19 C 0.068 3.932 20 H 0.089 0.911 21 O -0.369 6.369 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.451 5.303 8.103 10.658 hybrid contribution 0.017 -1.719 0.012 1.720 sum 4.468 3.584 8.115 9.933 Atomic orbital electron populations 1.80787 1.15598 1.15447 1.11638 1.30788 0.96636 0.87354 0.89772 1.18305 0.79406 0.98496 0.91104 1.44110 1.73745 1.07529 1.04818 1.20215 1.14363 0.82671 1.17274 0.86572 1.25674 0.97362 1.00384 1.01745 1.69848 1.25024 1.33245 1.30638 0.85492 0.78482 0.82336 0.75480 1.22757 1.23629 1.19047 1.20771 0.93725 0.92332 0.86783 0.92550 1.21949 0.96425 0.97161 1.00781 1.21398 0.96858 0.97911 0.99004 1.21301 0.96514 0.98705 0.97199 1.22802 0.95169 1.00246 1.03191 1.21613 0.82413 0.93786 0.95428 0.91144 1.86653 1.31971 1.73325 1.44999 0.89242 0.89118 0.95111 0.90064 0.93705 0.94762 0.93454 0.90976 0.93937 0.91836 0.88777 0.77143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.28 18.24 20.01 0.36 -27.91 16 2 C 0.27 12.86 9.44 89.44 0.84 13.71 16 3 C 0.26 10.88 5.22 84.57 0.44 11.32 16 4 N -0.58 -24.62 2.00 -688.51 -1.37 -25.99 16 5 C -0.22 -10.03 5.78 84.03 0.49 -9.55 16 6 H 0.12 5.23 4.27 -2.91 -0.01 5.22 16 7 C -0.06 -2.97 5.10 84.86 0.43 -2.54 16 8 N -0.94 -51.67 9.17 21.65 0.20 -51.47 16 9 Si 0.95 43.14 29.56 68.60 2.03 45.17 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.31 -14.73 7.11 99.48 0.71 -14.03 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.17 5.93 3.00 44.99 0.14 6.07 16 14 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 15 C -0.12 -4.19 4.90 30.59 0.15 -4.04 16 16 C -0.11 -4.42 5.45 30.60 0.17 -4.25 16 17 C -0.10 -3.30 5.92 30.60 0.18 -3.12 16 18 C -0.18 -5.95 5.02 30.60 0.15 -5.79 16 19 C 0.13 3.89 3.04 30.60 0.09 3.98 16 20 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 21 O -0.56 -17.47 10.64 -148.98 -1.58 -19.06 16 22 H 0.09 3.06 8.12 -2.39 -0.02 3.04 16 23 H 0.09 4.23 6.74 -2.39 -0.02 4.21 16 24 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 1.63 6.56 -2.39 -0.02 1.61 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.05 2.32 5.73 -2.39 -0.01 2.30 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 4.05 4.42 -2.39 -0.01 4.04 16 33 H 0.38 8.25 9.08 -74.06 -0.67 7.58 16 Total: -1.00 -61.42 254.02 3.17 -58.25 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.45 Total: 15.24 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 3.08 Total: 5.78 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -0.81 Total: -105.37 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.58 Total: -19.06 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -61.42 3.17 -58.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037693553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.335 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds