Wall clock time and date at job start Mon Mar 30 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47029 * 270.00019 * 3 2 1 5 5 H 1.48499 * 109.47318 * 29.99866 * 3 2 1 6 6 H 1.48494 * 109.46938 * 150.00380 * 3 2 1 7 7 C 1.38947 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00162 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00414 * 179.97438 * 7 2 1 10 10 C 1.34775 * 120.00340 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99948 * 0.28001 * 10 9 7 12 12 C 1.50706 * 120.00123 * 179.97438 * 10 9 7 13 13 H 1.08996 * 115.55431 * 301.62548 * 12 10 9 14 14 C 1.53045 * 117.50713 * 155.86170 * 12 10 9 15 15 C 1.52729 * 59.94453 * 252.53737 * 14 12 10 16 16 C 1.53219 * 117.84910 * 107.73931 * 15 14 12 17 17 C 1.53259 * 108.61923 * 197.02095 * 16 15 14 18 18 N 1.46816 * 109.44442 * 304.41285 * 17 16 15 19 19 C 1.46803 * 111.58420 * 64.81754 * 18 17 16 20 20 C 1.53220 * 117.84217 * 252.26204 * 15 14 12 21 21 H 0.97004 * 119.99733 * 359.97438 * 1 2 3 22 22 H 0.97007 * 119.99544 * 0.02562 * 9 7 2 23 23 H 1.09009 * 117.50265 * 0.02562 * 14 12 10 24 24 H 1.08996 * 117.50905 * 145.05875 * 14 12 10 25 25 H 1.09004 * 109.61085 * 316.75643 * 16 15 14 26 26 H 1.08995 * 109.61554 * 77.27626 * 16 15 14 27 27 H 1.08995 * 109.47763 * 184.41994 * 17 16 15 28 28 H 1.09005 * 109.48015 * 64.40561 * 17 16 15 29 29 H 1.00899 * 110.99772 * 189.19952 * 18 17 16 30 30 H 1.09008 * 109.47391 * 175.18978 * 19 18 17 31 31 H 1.09001 * 109.48015 * 55.17992 * 19 18 17 32 32 H 1.08996 * 109.61784 * 282.71710 * 20 15 14 33 33 H 1.09006 * 109.61083 * 43.24373 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0057 12 6 5.5608 -2.3706 -0.0022 13 1 6.0303 -1.8554 -0.8401 14 6 6.2680 -3.6091 0.5529 15 6 6.2672 -2.3068 1.3507 16 6 5.3958 -2.2388 2.6091 17 6 5.2084 -0.7677 2.9957 18 7 6.5227 -0.1339 3.1587 19 6 7.2620 -0.0900 1.8912 20 6 7.5785 -1.5187 1.4353 21 1 -0.4850 0.8401 0.0004 22 1 3.8649 -0.3633 -0.0007 23 1 5.6432 -4.4241 0.9185 24 1 7.2030 -3.9093 0.0800 25 1 4.4247 -2.6904 2.4065 26 1 5.8870 -2.7714 3.4235 27 1 4.6563 -0.7058 3.9334 28 1 4.6519 -0.2539 2.2117 29 1 6.4322 0.7888 3.5568 30 1 8.1920 0.4610 2.0319 31 1 6.6560 0.4074 1.1339 32 1 8.2449 -1.9933 2.1555 33 1 8.0538 -1.4929 0.4547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069792327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:33 Heat of formation + Delta-G solvation = -16.754592 kcal Electronic energy + Delta-G solvation = -16070.378577 eV Core-core repulsion = 13517.279883 eV Total energy + Delta-G solvation = -2553.098694 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77759 -37.54567 -35.13737 -33.88364 -31.64436 -30.77969 -28.68994 -25.65829 -23.03174 -22.66567 -21.60547 -19.52134 -18.65727 -17.70310 -16.46507 -16.02764 -14.99432 -14.60844 -14.35805 -14.11512 -13.78986 -13.08569 -12.91443 -12.62322 -12.42642 -12.32882 -12.02074 -11.49998 -11.30644 -11.26161 -10.97483 -10.63116 -10.27482 -10.00620 -9.69805 -9.64630 -9.46054 -8.51661 -8.33627 -8.17879 -6.34196 -3.84621 2.97015 3.02730 3.10825 3.55380 4.06193 4.10563 4.33477 4.53862 4.94012 4.95494 5.06488 5.24123 5.31381 5.36932 5.55114 5.65878 5.73889 5.79292 5.92507 5.94502 6.05480 6.09900 6.13325 6.34617 6.44217 6.46257 6.57611 7.13104 7.44839 7.55165 8.13447 8.57792 8.92613 9.41295 9.83365 10.79029 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.011083 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.153685 B = 2525.893079 C = 3123.306006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.043 3.957 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.583 5.583 10 C 0.482 3.518 11 O -0.576 6.576 12 C -0.170 4.170 13 H 0.111 0.889 14 C -0.141 4.141 15 C -0.110 4.110 16 C -0.079 4.079 17 C 0.057 3.943 18 N -0.691 5.691 19 C 0.059 3.941 20 C -0.076 4.076 21 H 0.273 0.727 22 H 0.370 0.630 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.339 0.661 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.986 2.308 3.920 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.160 4.160 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.220 5.220 10 C 0.268 3.732 11 O -0.460 6.460 12 C -0.191 4.191 13 H 0.128 0.872 14 C -0.178 4.178 15 C -0.111 4.111 16 C -0.117 4.117 17 C -0.072 4.072 18 N -0.322 5.322 19 C -0.071 4.071 20 C -0.114 4.114 21 H 0.084 0.916 22 H 0.202 0.798 23 H 0.121 0.879 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.637 1.155 4.113 15.248 hybrid contribution 0.033 2.194 -0.632 2.283 sum 14.670 3.349 3.481 15.445 Atomic orbital electron populations 1.69619 1.05571 1.27449 1.49343 1.25013 0.95448 0.97812 0.97709 0.86734 0.79702 0.84316 0.78960 1.19599 1.20102 1.19696 1.19455 0.79295 0.96595 1.47914 0.86249 1.42178 1.07314 1.06122 1.66432 1.18858 0.86779 0.84282 0.83236 1.90553 1.69402 1.31255 1.54778 1.22404 0.94238 1.04567 0.97932 0.87156 1.22899 1.01113 0.91627 1.02191 1.21516 0.97194 1.00339 0.92003 1.21197 0.99390 0.95982 0.95146 1.21957 0.89178 0.95261 1.00777 1.60158 1.19798 1.25756 1.26500 1.21912 0.97725 0.96873 0.90582 1.21207 0.94926 0.94416 1.00833 0.91606 0.79769 0.87863 0.88794 0.90372 0.91083 0.90822 0.94240 0.84404 0.91067 0.95143 0.90720 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 19.53 27.74 -169.99 -4.71 14.81 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 7 C -0.30 -8.61 10.16 -14.94 -0.15 -8.76 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.58 -14.10 4.98 -10.96 -0.05 -14.16 16 10 C 0.48 11.26 5.81 -10.98 -0.06 11.20 16 11 O -0.58 -15.85 16.12 5.55 0.09 -15.76 16 12 C -0.17 -3.02 5.88 -91.87 -0.54 -3.56 16 13 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 14 C -0.14 -2.19 9.51 -26.85 -0.26 -2.45 16 15 C -0.11 -1.68 2.02 -154.54 -0.31 -1.99 16 16 C -0.08 -1.30 5.52 -26.48 -0.15 -1.45 16 17 C 0.06 0.90 6.55 -3.74 -0.02 0.87 16 18 N -0.69 -9.08 6.77 -113.61 -0.77 -9.85 16 19 C 0.06 0.72 6.55 -3.74 -0.02 0.70 16 20 C -0.08 -0.94 5.87 -26.48 -0.16 -1.10 16 21 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.37 8.10 5.58 -40.82 -0.23 7.87 16 23 H 0.10 1.78 7.88 -51.92 -0.41 1.37 16 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.53 6.85 -51.93 -0.36 1.17 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 29 H 0.34 3.85 8.90 -39.29 -0.35 3.50 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -31.46 271.44 -7.03 -38.49 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.68 Total: 12.71 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.77 Total: -5.44 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.05 Total: -48.91 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.46 -7.03 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069792327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.740 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds