Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00174 * 2 1 4 4 C 1.50700 * 109.47582 * 179.97438 * 3 2 1 5 5 O 1.33867 * 126.05407 * 270.28613 * 4 3 2 6 6 C 1.34259 * 111.06028 * 180.19827 * 5 4 3 7 7 C 1.50699 * 125.15070 * 179.81160 * 6 5 4 8 8 C 1.52997 * 109.47078 * 299.69826 * 7 6 5 9 9 C 1.53006 * 109.46866 * 59.69649 * 7 6 5 10 10 C 1.34008 * 109.70124 * 359.54776 * 6 5 4 11 11 C 1.38986 * 126.05147 * 89.99907 * 4 3 2 12 12 C 1.41376 * 127.37275 * 359.97438 * 11 4 3 13 13 H 1.08001 * 120.00322 * 359.97204 * 12 11 4 14 14 C 1.39695 * 119.99901 * 179.97438 * 12 11 4 15 15 N 1.31026 * 119.99988 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00299 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47050 * 119.99660 * 16 14 12 19 19 H 1.48495 * 109.47648 * 239.99955 * 16 14 12 20 20 H 1.09001 * 109.46880 * 59.99962 * 1 2 3 21 21 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47294 * 299.99857 * 1 2 3 23 23 H 1.09000 * 109.47149 * 59.99500 * 3 2 1 24 24 H 1.09002 * 109.47073 * 299.99970 * 3 2 1 25 25 H 1.08996 * 109.46924 * 179.69079 * 7 6 5 26 26 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 27 27 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 29 29 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 30 30 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 31 31 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 32 32 H 1.07999 * 126.95374 * 180.24521 * 10 6 5 33 33 H 0.96998 * 120.00200 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.2971 1.1192 1.0832 6 6 5.5905 1.0228 0.7365 7 6 6.7434 0.9322 1.7027 8 6 6.7708 2.1834 2.5828 9 6 6.5742 -0.3073 2.5837 10 6 5.7007 1.0136 -0.5991 11 6 4.3284 1.1218 -1.1227 12 6 3.9268 1.1528 -2.4779 13 1 2.8797 1.2348 -2.7291 14 6 4.8846 1.0775 -3.4920 15 7 6.1550 0.9775 -3.1873 16 14 4.3541 1.1178 -5.2827 17 1 2.8755 1.2337 -5.3583 18 1 4.9768 2.2850 -5.9573 19 1 4.7881 -0.1326 -5.9559 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 7.6782 0.8581 1.1471 26 1 6.8913 3.0665 1.9552 27 1 7.6044 2.1176 3.2819 28 1 5.8359 2.2574 3.1384 29 1 5.6394 -0.2333 3.1392 30 1 6.5547 -1.1987 1.9567 31 1 7.4084 -0.3731 3.2823 32 1 6.6116 0.9418 -1.1749 33 1 6.8201 0.9255 -3.8915 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077086721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = -57.580837 kcal Electronic energy + Delta-G solvation = -15513.182514 eV Core-core repulsion = 12926.020709 eV Total energy + Delta-G solvation = -2587.161804 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35132 -36.91947 -34.75515 -33.82773 -30.59993 -29.17666 -26.75755 -26.69431 -25.40329 -23.77750 -20.69398 -20.10582 -18.35683 -16.46386 -15.68254 -15.41999 -15.00754 -14.55051 -14.28345 -14.08000 -13.86838 -12.74604 -12.53907 -12.47079 -11.96891 -11.87596 -11.74985 -11.27367 -11.06352 -10.92056 -10.73937 -10.68924 -10.47358 -10.43678 -9.82370 -9.49960 -9.36817 -8.91686 -7.76688 -6.90332 -6.56339 -4.20128 2.92646 3.13388 3.19237 3.29605 4.03270 4.15515 4.40565 4.88815 5.41484 5.53316 5.56554 5.70304 5.74583 5.77903 6.00900 6.02296 6.05965 6.10269 6.21925 6.25813 6.33242 6.43286 6.68172 6.71390 7.01905 7.19480 7.30461 7.62441 7.84957 7.98312 8.15171 8.49663 8.93252 8.99386 9.23476 10.39600 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.011062 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.579166 B = 2530.683985 C = 3814.715341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.188 3.812 4 C -0.231 4.231 5 O -0.198 6.198 6 C -0.038 4.038 7 C -0.007 4.007 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.206 4.206 11 C 0.060 3.940 12 C -0.434 4.434 13 H 0.074 0.926 14 C 0.071 3.929 15 N -0.815 5.815 16 Si 0.915 3.085 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.034 0.966 21 H 0.075 0.925 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.159 0.841 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 0.543 5.009 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C 0.113 3.887 4 C -0.278 4.278 5 O -0.100 6.100 6 C -0.088 4.088 7 C -0.025 4.025 8 C -0.199 4.199 9 C -0.200 4.200 10 C -0.226 4.226 11 C 0.057 3.943 12 C -0.465 4.465 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.444 5.444 16 Si 0.740 3.260 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.200 1.200 20 H 0.053 0.947 21 H 0.094 0.906 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.379 0.374 5.177 5.371 hybrid contribution -0.340 0.161 -1.114 1.176 sum -1.719 0.535 4.063 4.444 Atomic orbital electron populations 1.22602 0.83264 1.01641 0.99042 1.88142 1.17621 1.30109 1.95109 1.20006 0.86601 0.83462 0.98634 1.21333 0.89975 1.32527 0.83996 1.83245 1.15448 1.75853 1.35419 1.21723 0.83256 1.09269 0.94503 1.19523 0.93716 0.95289 0.93975 1.21813 1.01297 0.97656 0.99181 1.21813 1.01253 0.97717 0.99187 1.23205 0.99594 1.08441 0.91403 1.19091 0.90145 0.92651 0.92421 1.18883 0.94099 1.44238 0.89268 0.90796 1.25832 0.94502 0.92559 1.01439 1.69773 1.01262 1.38990 1.34397 0.86155 0.79835 0.78309 0.81693 1.18680 1.20087 1.20039 0.94693 0.90641 0.95076 0.94747 0.92125 0.89547 0.92563 0.93024 0.92577 0.92540 0.92544 0.93039 0.82374 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.39 -8.75 10.69 -35.23 -0.38 -9.12 16 3 C 0.19 4.26 6.29 36.01 0.23 4.49 16 4 C -0.23 -6.18 7.12 -34.03 -0.24 -6.42 16 5 O -0.20 -5.13 10.52 6.98 0.07 -5.05 16 6 C -0.04 -0.92 5.76 -35.80 -0.21 -1.12 16 7 C -0.01 -0.12 3.31 -91.77 -0.30 -0.43 16 8 C -0.14 -2.28 9.18 37.16 0.34 -1.94 16 9 C -0.14 -2.34 9.18 37.16 0.34 -2.00 16 10 C -0.21 -5.57 9.74 -37.39 -0.36 -5.93 16 11 C 0.06 1.71 6.11 -104.75 -0.64 1.07 16 12 C -0.43 -12.21 9.13 -37.84 -0.35 -12.55 16 13 H 0.07 2.02 7.39 -52.49 -0.39 1.63 16 14 C 0.07 1.87 5.49 -17.35 -0.10 1.77 16 15 N -0.82 -21.78 10.46 55.54 0.58 -21.20 16 16 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 17 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.32 7.62 -51.93 -0.40 0.93 16 25 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.16 4.33 6.09 -52.49 -0.32 4.01 16 33 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 283.77 15.07 4.28 4.28 Total: -1.00 -30.74 283.77 -5.53 -36.27 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.88 Total: 1.58 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.18 Total: -21.44 kcal Atomic # 7 Polarization: -21.78 SS G_CDS: 0.58 Total: -21.20 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.30 Total: -14.18 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.74 -5.53 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077086721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.309 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds