Wall clock time and date at job start Mon Mar 30 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00174 * 2 1 4 4 C 1.50700 * 109.47582 * 179.97438 * 3 2 1 5 5 O 1.33867 * 126.05407 * 270.28613 * 4 3 2 6 6 C 1.34259 * 111.06028 * 180.19827 * 5 4 3 7 7 C 1.50699 * 125.15070 * 179.81160 * 6 5 4 8 8 C 1.52997 * 109.47078 * 299.69826 * 7 6 5 9 9 C 1.53006 * 109.46866 * 59.69649 * 7 6 5 10 10 C 1.34008 * 109.70124 * 359.54776 * 6 5 4 11 11 C 1.38986 * 126.05147 * 89.99907 * 4 3 2 12 12 C 1.41376 * 127.37275 * 359.97438 * 11 4 3 13 13 H 1.08001 * 120.00322 * 359.97204 * 12 11 4 14 14 C 1.39695 * 119.99901 * 179.97438 * 12 11 4 15 15 N 1.31026 * 119.99988 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00299 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47050 * 119.99660 * 16 14 12 19 19 H 1.48495 * 109.47648 * 239.99955 * 16 14 12 20 20 H 1.09001 * 109.46880 * 59.99962 * 1 2 3 21 21 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47294 * 299.99857 * 1 2 3 23 23 H 1.09000 * 109.47149 * 59.99500 * 3 2 1 24 24 H 1.09002 * 109.47073 * 299.99970 * 3 2 1 25 25 H 1.08996 * 109.46924 * 179.69079 * 7 6 5 26 26 H 1.09002 * 109.47153 * 299.99793 * 8 7 6 27 27 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.47261 * 59.99965 * 8 7 6 29 29 H 1.08993 * 109.46955 * 300.00219 * 9 7 6 30 30 H 1.09000 * 109.47050 * 60.00048 * 9 7 6 31 31 H 1.09001 * 109.47002 * 179.97438 * 9 7 6 32 32 H 1.07999 * 126.95374 * 180.24521 * 10 6 5 33 33 H 0.96998 * 120.00200 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.2971 1.1192 1.0832 6 6 5.5905 1.0228 0.7365 7 6 6.7434 0.9322 1.7027 8 6 6.7708 2.1834 2.5828 9 6 6.5742 -0.3073 2.5837 10 6 5.7007 1.0136 -0.5991 11 6 4.3284 1.1218 -1.1227 12 6 3.9268 1.1528 -2.4779 13 1 2.8797 1.2348 -2.7291 14 6 4.8846 1.0775 -3.4920 15 7 6.1550 0.9775 -3.1873 16 14 4.3541 1.1178 -5.2827 17 1 2.8755 1.2337 -5.3583 18 1 4.9768 2.2850 -5.9573 19 1 4.7881 -0.1326 -5.9559 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8464 -0.8900 25 1 7.6782 0.8581 1.1471 26 1 6.8913 3.0665 1.9552 27 1 7.6044 2.1176 3.2819 28 1 5.8359 2.2574 3.1384 29 1 5.6394 -0.2333 3.1392 30 1 6.5547 -1.1987 1.9567 31 1 7.4084 -0.3731 3.2823 32 1 6.6116 0.9418 -1.1749 33 1 6.8201 0.9255 -3.8915 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077086721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:05 Heat of formation + Delta-G solvation = -76.544962 kcal Electronic energy + Delta-G solvation = -15514.004860 eV Core-core repulsion = 12926.020709 eV Total energy + Delta-G solvation = -2587.984150 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.33244 -38.55906 -36.26527 -35.83142 -32.61965 -30.95731 -28.57327 -27.98921 -27.03024 -25.54468 -22.31755 -22.11424 -20.31578 -18.40966 -17.36525 -17.22867 -16.64607 -16.29672 -15.97476 -15.81890 -15.36196 -14.41120 -14.31546 -13.86746 -13.82675 -13.44119 -13.03233 -12.96873 -12.89624 -12.51264 -12.38165 -12.13976 -12.05184 -11.90142 -11.72178 -11.43937 -11.25237 -10.53126 -9.83720 -8.88115 -8.53478 -6.29308 1.10242 1.36655 1.48570 1.52336 2.18365 2.22464 2.58247 3.18878 3.57271 3.93058 4.11503 4.29747 4.33079 4.36012 4.55734 4.59874 4.61865 4.81627 4.81900 4.87551 4.96452 4.99859 5.05753 5.16299 5.28899 5.39611 5.46688 5.64516 5.87362 6.10938 6.40393 6.42279 6.88081 6.93859 7.19050 8.44330 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.011062 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.579166 B = 2530.683985 C = 3814.715341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.424 6.424 3 C 0.194 3.806 4 C -0.254 4.254 5 O -0.203 6.203 6 C -0.023 4.023 7 C -0.011 4.011 8 C -0.135 4.135 9 C -0.136 4.136 10 C -0.248 4.248 11 C 0.019 3.981 12 C -0.470 4.470 13 H 0.070 0.930 14 C 0.026 3.974 15 N -0.840 5.840 16 Si 0.991 3.009 17 H -0.260 1.260 18 H -0.263 1.263 19 H -0.266 1.266 20 H 0.046 0.954 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 0.539 5.477 5.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.344 6.344 3 C 0.119 3.881 4 C -0.302 4.302 5 O -0.104 6.104 6 C -0.073 4.073 7 C -0.030 4.030 8 C -0.192 4.192 9 C -0.193 4.193 10 C -0.268 4.268 11 C 0.016 3.984 12 C -0.501 4.501 13 H 0.088 0.912 14 C -0.186 4.186 15 N -0.469 5.469 16 Si 0.812 3.188 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.191 1.191 20 H 0.065 0.935 21 H 0.114 0.886 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.166 0.834 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.506 0.370 5.667 5.876 hybrid contribution -0.307 0.137 -1.176 1.223 sum -1.813 0.507 4.492 4.870 Atomic orbital electron populations 1.22911 0.79929 1.03627 1.00714 1.88044 1.21241 1.29724 1.95425 1.19974 0.84487 0.83980 0.99696 1.22060 0.91959 1.32382 0.83760 1.83255 1.16199 1.75549 1.35416 1.22656 0.83863 1.05784 0.94989 1.19827 0.91491 0.97812 0.93850 1.21766 1.02705 0.95658 0.99100 1.21772 1.02655 0.95763 0.99129 1.23208 0.98979 1.11783 0.92878 1.19611 0.91457 0.93769 0.93527 1.19112 0.94449 1.46440 0.90097 0.91208 1.26780 0.94315 0.91505 1.05991 1.69846 1.02247 1.38636 1.36207 0.85021 0.79468 0.78883 0.75430 1.18375 1.18735 1.19102 0.93541 0.88574 0.92788 0.92493 0.92007 0.88577 0.93512 0.88958 0.93193 0.93311 0.93890 0.88850 0.83448 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.42 -18.92 10.69 -148.98 -1.59 -20.51 16 3 C 0.19 8.84 6.29 71.24 0.45 9.29 16 4 C -0.25 -13.99 7.12 25.87 0.18 -13.80 16 5 O -0.20 -10.67 10.52 2.08 0.02 -10.65 16 6 C -0.02 -1.13 5.76 24.72 0.14 -0.98 16 7 C -0.01 -0.41 3.31 -11.54 -0.04 -0.45 16 8 C -0.14 -4.04 9.18 71.98 0.66 -3.38 16 9 C -0.14 -4.20 9.18 71.98 0.66 -3.54 16 10 C -0.25 -13.95 9.74 23.69 0.23 -13.72 16 11 C 0.02 1.15 6.11 -19.95 -0.12 1.02 16 12 C -0.47 -27.42 9.13 23.39 0.21 -27.20 16 13 H 0.07 3.95 7.39 -2.91 -0.02 3.93 16 14 C 0.03 1.38 5.49 85.17 0.47 1.85 16 15 N -0.84 -46.03 10.46 21.79 0.23 -45.80 16 16 Si 0.99 40.66 29.56 68.60 2.03 42.69 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.06 2.74 7.62 -2.39 -0.02 2.72 16 25 H 0.10 3.25 8.09 -2.39 -0.02 3.23 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.15 8.47 6.09 -2.91 -0.02 8.45 16 33 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -69.06 283.77 5.86 -63.20 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 1.08 Total: 20.00 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 4.10 Total: -48.93 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.23 Total: -45.80 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.57 Total: -31.16 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -69.06 5.86 -63.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077086721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.346 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds