Wall clock time and date at job start Mon Mar 30 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00266 * 2 1 4 4 H 1.48508 * 109.46771 * 274.98330 * 3 2 1 5 5 H 1.48493 * 109.47540 * 34.97724 * 3 2 1 6 6 H 1.48500 * 109.47103 * 154.98245 * 3 2 1 7 7 C 1.40051 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00296 * 186.18132 * 7 2 1 9 9 C 1.46379 * 119.99850 * 6.18274 * 7 2 1 10 10 O 1.21694 * 120.00213 * 353.98246 * 9 7 2 11 11 N 1.34778 * 119.99996 * 173.97773 * 9 7 2 12 12 C 1.48238 * 127.75287 * 0.02683 * 11 9 7 13 13 C 1.54649 * 104.65140 * 141.03851 * 12 11 9 14 14 C 1.53292 * 104.57863 * 23.70838 * 13 12 11 15 15 C 1.53258 * 111.26515 * 120.75938 * 14 13 12 16 16 C 1.54643 * 104.77417 * 121.28169 * 15 14 13 17 17 N 1.48844 * 104.53969 * 336.44411 * 16 15 14 18 18 C 1.48793 * 104.45574 * 38.73775 * 17 16 15 19 19 C 1.48393 * 127.75510 * 180.02562 * 11 9 7 20 20 H 0.97001 * 119.99580 * 0.02562 * 1 2 3 21 21 H 1.08997 * 110.40120 * 22.24809 * 12 11 9 22 22 H 1.09002 * 110.49556 * 259.87990 * 12 11 9 23 23 H 1.08999 * 110.42004 * 264.93241 * 13 12 11 24 24 H 1.09006 * 110.51542 * 142.52669 * 13 12 11 25 25 H 1.09004 * 110.39333 * 240.13451 * 15 14 13 26 26 H 1.08995 * 110.39792 * 2.42506 * 15 14 13 27 27 H 1.08990 * 110.40596 * 95.15207 * 16 15 14 28 28 H 1.09005 * 110.40188 * 217.58266 * 16 15 14 29 29 H 1.00902 * 111.01141 * 158.43785 * 17 16 15 30 30 H 1.08999 * 110.46062 * 202.79318 * 18 17 16 31 31 H 1.09000 * 110.46016 * 80.22043 * 18 17 16 32 32 H 1.09002 * 110.45063 * 99.91206 * 19 11 9 33 33 H 1.08992 * 110.45074 * 337.36672 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3949 5 1 1.4950 2.6200 0.8025 6 1 3.5870 1.4119 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0822 -1.2157 0.1012 9 6 1.2814 -2.4769 -0.1354 10 8 0.0644 -2.4827 -0.1388 11 7 1.9610 -3.6344 -0.2570 12 6 3.4308 -3.8264 -0.2737 13 6 3.6650 -5.1237 0.5348 14 6 2.3376 -5.8841 0.4373 15 6 2.5317 -7.2607 -0.2080 16 6 2.0299 -8.2677 0.8529 17 7 2.1528 -7.5407 2.1459 18 6 1.7453 -6.1455 1.8277 19 6 1.4061 -5.0028 -0.4042 20 1 -0.4849 0.8401 -0.0004 21 1 3.9295 -2.9844 0.2063 22 1 3.7885 -3.9462 -1.2963 23 1 3.8927 -4.8881 1.5744 24 1 4.4717 -5.7088 0.0930 25 1 1.9378 -7.3405 -1.1185 26 1 3.5856 -7.4326 -0.4264 27 1 0.9896 -8.5323 0.6636 28 1 2.6556 -9.1603 0.8556 29 1 1.5481 -7.9433 2.8462 30 1 2.1631 -5.4509 2.5564 31 1 0.6588 -6.0627 1.8006 32 1 1.4293 -5.3128 -1.4490 33 1 0.3885 -5.0448 -0.0161 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:02 Heat of formation + Delta-G solvation = -56.370711 kcal Electronic energy + Delta-G solvation = -15806.704099 eV Core-core repulsion = 13251.887521 eV Total energy + Delta-G solvation = -2554.816578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06467 -38.83074 -36.57570 -34.67122 -32.15443 -30.35857 -29.97166 -28.53106 -25.73705 -23.65839 -22.53286 -21.26399 -20.08160 -18.49665 -17.70355 -17.24073 -16.31690 -16.07591 -15.84079 -15.57303 -14.96047 -14.37433 -14.12216 -13.66985 -13.43463 -13.26972 -13.05510 -12.83758 -12.72717 -12.53218 -12.43931 -12.31587 -12.01158 -11.70550 -11.43917 -11.30995 -10.96048 -9.90035 -9.58658 -9.16729 -8.33569 -6.87413 1.38208 1.39648 1.55932 2.21799 2.42110 2.83415 3.23693 3.49090 3.60507 3.67741 3.81994 4.19088 4.28658 4.38030 4.44086 4.59052 4.68704 4.77731 4.84023 4.87029 4.96340 5.01953 5.12387 5.17465 5.24292 5.31746 5.33467 5.62152 5.72759 6.00797 6.37141 6.39332 6.83962 7.48972 8.42312 8.63895 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053344 B = 0.006936 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.772799 B = 4036.157917 C = 4215.605088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.557 3.443 10 O -0.636 6.636 11 N -0.657 5.657 12 C 0.107 3.893 13 C -0.103 4.103 14 C -0.072 4.072 15 C -0.107 4.107 16 C 0.035 3.965 17 N -0.665 5.665 18 C 0.054 3.946 19 C 0.119 3.881 20 H 0.275 0.725 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.343 0.657 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.200 -12.316 0.756 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.602 4.602 8 H 0.106 0.894 9 C 0.364 3.636 10 O -0.524 6.524 11 N -0.394 5.394 12 C -0.016 4.016 13 C -0.141 4.141 14 C -0.073 4.073 15 C -0.145 4.145 16 C -0.094 4.094 17 N -0.295 5.295 18 C -0.075 4.075 19 C -0.005 4.005 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.158 0.842 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.059 -12.046 0.781 15.093 hybrid contribution -1.354 0.811 -0.090 1.580 sum 7.706 -11.236 0.690 13.642 Atomic orbital electron populations 1.70205 1.09658 1.29036 1.36452 1.27041 0.95527 1.05054 0.91124 0.84979 0.78943 0.74915 0.79295 1.18631 1.19612 1.16995 1.21376 0.95114 0.89781 1.53915 0.89432 1.18395 0.86157 0.83067 0.75984 1.90546 1.16255 1.86896 1.58714 1.49139 1.07415 1.05179 1.77631 1.22340 0.81251 0.98151 0.99870 1.22541 0.96118 0.94791 1.00641 1.21464 0.95595 0.95821 0.94450 1.22405 1.03299 0.90961 0.97799 1.23098 0.99982 0.97535 0.88737 1.63796 1.55132 1.01512 1.09011 1.22803 0.96755 0.91868 0.96113 1.22154 0.96625 0.83191 0.98549 0.91497 0.91479 0.91559 0.91533 0.87740 0.90572 0.88770 0.93973 0.88080 0.84172 0.91482 0.95836 0.92027 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.68 11.85 21.84 0.26 -51.42 16 2 C 0.03 1.56 5.49 85.30 0.47 2.03 16 3 Si 1.00 41.59 29.56 68.60 2.03 43.62 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.57 -33.05 9.08 24.83 0.23 -32.82 16 8 H 0.09 4.62 6.48 -2.91 -0.02 4.60 16 9 C 0.56 33.95 7.84 86.36 0.68 34.62 16 10 O -0.64 -44.74 15.32 -4.33 -0.07 -44.81 16 11 N -0.66 -31.41 3.33 -813.57 -2.71 -34.12 16 12 C 0.11 3.88 6.90 86.61 0.60 4.47 16 13 C -0.10 -2.92 6.33 31.25 0.20 -2.72 16 14 C -0.07 -2.13 0.96 -51.74 -0.05 -2.18 16 15 C -0.11 -2.32 6.30 31.24 0.20 -2.12 16 16 C 0.04 0.70 7.51 86.49 0.65 1.35 16 17 N -0.67 -15.62 7.63 -500.91 -3.82 -19.45 16 18 C 0.05 1.65 6.60 86.06 0.57 2.22 16 19 C 0.12 4.72 6.13 86.14 0.53 5.25 16 20 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 21 H 0.07 2.51 6.67 -2.39 -0.02 2.50 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.07 1.95 7.31 -2.39 -0.02 1.94 16 24 H 0.10 2.26 7.19 -2.38 -0.02 2.24 16 25 H 0.08 1.59 7.41 -2.38 -0.02 1.57 16 26 H 0.09 1.71 7.19 -2.39 -0.02 1.69 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.34 6.91 8.93 -89.69 -0.80 6.11 16 30 H 0.07 2.23 7.39 -2.39 -0.02 2.22 16 31 H 0.02 0.79 7.46 -2.39 -0.02 0.77 16 32 H 0.06 2.26 7.54 -2.39 -0.02 2.24 16 33 H 0.04 1.69 7.19 -2.39 -0.02 1.68 16 Total: -1.00 -77.93 265.61 0.07 -77.86 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.32 Total: 18.22 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.06 Total: 10.09 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.27 Total: -104.98 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -0.07 Total: -44.81 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -77.93 0.07 -77.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.489 kcal (2) G-P(sol) polarization free energy of solvation -77.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds