Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46800 * 299.99771 * 3 2 1 6 6 H 1.48498 * 109.46999 * 59.99212 * 3 2 1 7 7 C 1.37878 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99663 * 0.28052 * 7 2 1 10 10 N 1.46499 * 109.47153 * 179.72143 * 9 7 2 11 11 C 1.34781 * 119.99890 * 270.00292 * 10 9 7 12 12 O 1.21282 * 120.00113 * 0.74534 * 11 10 9 13 13 C 1.50701 * 119.99752 * 180.75234 * 11 10 9 14 14 N 1.46901 * 115.55053 * 329.77598 * 13 11 10 15 15 C 1.53000 * 117.49592 * 184.11235 * 13 11 10 16 16 C 1.52997 * 117.49958 * 115.44953 * 13 11 10 17 17 C 1.46495 * 120.00121 * 89.99814 * 10 9 7 18 18 C 1.53003 * 117.49651 * 5.54146 * 17 10 9 19 19 C 1.52997 * 117.50009 * 296.88211 * 17 10 9 20 20 H 0.96998 * 119.99964 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47355 * 299.72073 * 9 7 2 22 22 H 1.09001 * 109.47101 * 59.71935 * 9 7 2 23 23 H 1.00910 * 110.99714 * 341.39373 * 14 13 11 24 24 H 1.00894 * 111.00452 * 105.34799 * 14 13 11 25 25 H 1.08993 * 117.50335 * 359.97438 * 15 13 11 26 26 H 1.09004 * 117.49737 * 145.02078 * 15 13 11 27 27 H 1.09008 * 117.49369 * 214.97550 * 16 13 11 28 28 H 1.08996 * 117.49976 * 359.97438 * 16 13 11 29 29 H 1.09003 * 115.54970 * 151.21257 * 17 10 9 30 30 H 1.09000 * 117.49906 * 359.97438 * 18 17 10 31 31 H 1.09004 * 117.49641 * 145.01960 * 18 17 10 32 32 H 1.08999 * 117.50060 * 214.97356 * 19 17 10 33 33 H 1.08999 * 117.49752 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 -0.0053 10 7 2.2032 -3.6126 -0.0102 11 6 2.6412 -4.1196 -1.1797 12 8 2.2576 -3.6452 -2.2279 13 6 3.6074 -5.2760 -1.1848 14 7 4.5198 -5.3445 -0.0355 15 6 4.1419 -5.7440 -2.5399 16 6 3.1230 -6.5987 -1.7820 17 6 2.6792 -4.1749 1.2560 18 6 2.0489 -3.6451 2.5456 19 6 3.4834 -3.2570 2.1787 20 1 -0.4850 0.8400 -0.0004 21 1 0.6245 -2.5609 0.8844 22 1 0.6245 -2.5529 -0.8955 23 1 4.5750 -4.4539 0.4359 24 1 4.2430 -6.0750 0.6030 25 1 3.7944 -5.2157 -3.4277 26 1 5.1704 -6.1030 -2.5785 27 1 3.4816 -7.5198 -1.3222 28 1 2.1053 -6.6326 -2.1707 29 1 2.9571 -5.2286 1.2275 30 1 1.2804 -2.8778 2.4518 31 1 1.9124 -4.3501 3.3657 32 1 4.2901 -3.7067 2.7576 33 1 3.6580 -2.2345 1.8438 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083835101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 38.186316 kcal Electronic energy + Delta-G solvation = -16003.741652 eV Core-core repulsion = 13453.025374 eV Total energy + Delta-G solvation = -2550.716278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.92039 -37.22421 -36.23732 -33.22451 -32.13912 -30.99159 -27.55801 -23.95031 -22.71228 -22.29662 -22.00310 -20.60258 -18.54687 -16.94006 -16.51067 -15.64715 -15.41185 -14.94199 -14.40490 -13.96352 -13.85806 -13.60785 -12.75422 -12.36032 -12.11126 -11.46950 -11.33378 -11.16310 -11.01732 -10.77673 -10.69754 -10.46706 -10.38110 -10.18058 -10.08612 -9.52047 -9.29972 -8.47346 -8.18356 -7.62281 -6.09103 -4.13690 3.01722 3.26942 3.35093 3.38892 3.67296 4.05921 4.29850 4.38610 4.43364 4.79587 5.09129 5.13257 5.23795 5.26094 5.27014 5.42527 5.66289 5.73856 6.00529 6.01505 6.10388 6.35391 6.48793 6.67962 6.93847 7.13899 7.36306 7.41299 7.49781 7.87149 8.16617 8.31782 8.83242 8.99197 9.51302 10.98847 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.009353 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.441884 B = 2992.838853 C = 3368.706734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.241 3.759 10 N -0.567 5.567 11 C 0.526 3.474 12 O -0.532 6.532 13 C 0.014 3.986 14 N -0.810 5.810 15 C -0.133 4.133 16 C -0.162 4.162 17 C 0.051 3.949 18 C -0.179 4.179 19 C -0.195 4.195 20 H 0.263 0.737 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.362 0.638 24 H 0.340 0.660 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -11.277 3.773 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.123 3.877 10 N -0.297 5.297 11 C 0.311 3.689 12 O -0.408 6.408 13 C -0.083 4.083 14 N -0.348 5.348 15 C -0.172 4.172 16 C -0.200 4.200 17 C -0.056 4.056 18 C -0.217 4.217 19 C -0.234 4.234 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.181 0.819 24 H 0.156 0.844 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.367 -11.030 2.683 13.015 hybrid contribution -0.371 1.256 0.755 1.511 sum 5.996 -9.774 3.438 11.971 Atomic orbital electron populations 1.69936 1.05980 1.26961 1.50380 1.24934 0.94878 0.99225 0.95034 0.86456 0.80066 0.83402 0.77614 1.19738 1.20869 1.20948 1.21426 0.93300 0.90423 1.51028 0.92324 1.19405 0.87548 0.82111 0.98647 1.47687 1.44643 1.34667 1.02734 1.19788 0.81566 0.83502 0.84053 1.90673 1.58249 1.60795 1.31050 1.21468 0.96765 0.95678 0.94363 1.58640 1.51709 1.12098 1.12382 1.23102 0.98867 1.01117 0.94095 1.23192 1.00456 0.92713 1.03685 1.22011 1.04559 0.95862 0.83140 1.23346 0.97743 1.04063 0.96515 1.23559 0.94237 1.02667 1.02962 0.92733 0.94322 0.93849 0.81910 0.84391 0.87624 0.87899 0.88021 0.88297 0.86428 0.86734 0.88927 0.89044 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.55 8.55 -34.44 -0.29 -14.84 16 8 H 0.06 1.65 7.25 -52.49 -0.38 1.27 16 9 C 0.24 6.25 4.73 -5.19 -0.02 6.23 16 10 N -0.57 -12.09 2.79 -167.47 -0.47 -12.56 16 11 C 0.53 11.38 7.28 -10.98 -0.08 11.30 16 12 O -0.53 -13.76 15.85 5.56 0.09 -13.67 16 13 C 0.01 0.23 2.70 -132.75 -0.36 -0.13 16 14 N -0.81 -11.17 8.72 -0.19 0.00 -11.17 16 15 C -0.13 -1.97 9.97 -26.69 -0.27 -2.24 16 16 C -0.16 -2.17 10.11 -26.69 -0.27 -2.44 16 17 C 0.05 0.82 4.26 -67.93 -0.29 0.53 16 18 C -0.18 -2.80 9.77 -26.69 -0.26 -3.06 16 19 C -0.20 -3.01 9.24 -26.69 -0.25 -3.25 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 21 H 0.04 1.00 5.89 -51.93 -0.31 0.70 16 22 H 0.04 1.29 7.43 -51.93 -0.39 0.90 16 23 H 0.36 5.38 5.61 -39.29 -0.22 5.16 16 24 H 0.34 3.75 7.41 -39.29 -0.29 3.46 16 25 H 0.11 1.71 7.67 -51.93 -0.40 1.31 16 26 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.12 1.56 5.06 -51.93 -0.26 1.30 16 30 H 0.11 2.16 6.06 -51.93 -0.31 1.85 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.11 2.13 6.83 -51.93 -0.35 1.78 16 LS Contribution 271.81 15.07 4.10 4.10 Total: -1.00 -31.76 271.81 -6.92 -38.68 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.16 Total: 9.63 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.19 Total: -6.26 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.27 Total: -49.25 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.76 -6.92 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083835101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.862 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds