Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46800 * 299.99771 * 3 2 1 6 6 H 1.48498 * 109.46999 * 59.99212 * 3 2 1 7 7 C 1.37878 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99663 * 0.28052 * 7 2 1 10 10 N 1.46499 * 109.47153 * 179.72143 * 9 7 2 11 11 C 1.34781 * 119.99890 * 270.00292 * 10 9 7 12 12 O 1.21282 * 120.00113 * 0.74534 * 11 10 9 13 13 C 1.50701 * 119.99752 * 180.75234 * 11 10 9 14 14 N 1.46901 * 115.55053 * 329.77598 * 13 11 10 15 15 C 1.53000 * 117.49592 * 184.11235 * 13 11 10 16 16 C 1.52997 * 117.49958 * 115.44953 * 13 11 10 17 17 C 1.46495 * 120.00121 * 89.99814 * 10 9 7 18 18 C 1.53003 * 117.49651 * 5.54146 * 17 10 9 19 19 C 1.52997 * 117.50009 * 296.88211 * 17 10 9 20 20 H 0.96998 * 119.99964 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47355 * 299.72073 * 9 7 2 22 22 H 1.09001 * 109.47101 * 59.71935 * 9 7 2 23 23 H 1.00910 * 110.99714 * 341.39373 * 14 13 11 24 24 H 1.00894 * 111.00452 * 105.34799 * 14 13 11 25 25 H 1.08993 * 117.50335 * 359.97438 * 15 13 11 26 26 H 1.09004 * 117.49737 * 145.02078 * 15 13 11 27 27 H 1.09008 * 117.49369 * 214.97550 * 16 13 11 28 28 H 1.08996 * 117.49976 * 359.97438 * 16 13 11 29 29 H 1.09003 * 115.54970 * 151.21257 * 17 10 9 30 30 H 1.09000 * 117.49906 * 359.97438 * 18 17 10 31 31 H 1.09004 * 117.49641 * 145.01960 * 18 17 10 32 32 H 1.08999 * 117.50060 * 214.97356 * 19 17 10 33 33 H 1.08999 * 117.49752 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 -0.0053 10 7 2.2032 -3.6126 -0.0102 11 6 2.6412 -4.1196 -1.1797 12 8 2.2576 -3.6452 -2.2279 13 6 3.6074 -5.2760 -1.1848 14 7 4.5198 -5.3445 -0.0355 15 6 4.1419 -5.7440 -2.5399 16 6 3.1230 -6.5987 -1.7820 17 6 2.6792 -4.1749 1.2560 18 6 2.0489 -3.6451 2.5456 19 6 3.4834 -3.2570 2.1787 20 1 -0.4850 0.8400 -0.0004 21 1 0.6245 -2.5609 0.8844 22 1 0.6245 -2.5529 -0.8955 23 1 4.5750 -4.4539 0.4359 24 1 4.2430 -6.0750 0.6030 25 1 3.7944 -5.2157 -3.4277 26 1 5.1704 -6.1030 -2.5785 27 1 3.4816 -7.5198 -1.3222 28 1 2.1053 -6.6326 -2.1707 29 1 2.9571 -5.2286 1.2275 30 1 1.2804 -2.8778 2.4518 31 1 1.9124 -4.3501 3.3657 32 1 4.2901 -3.7067 2.7576 33 1 3.6580 -2.2345 1.8438 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083835101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 14.917235 kcal Electronic energy + Delta-G solvation = -16004.750675 eV Core-core repulsion = 13453.025374 eV Total energy + Delta-G solvation = -2551.725301 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44992 -38.64370 -37.70944 -35.22628 -33.88422 -32.23463 -29.56815 -25.82846 -24.28066 -23.42554 -23.29578 -22.10299 -20.03012 -18.71938 -18.29520 -17.29150 -16.74380 -16.57074 -16.01877 -15.39507 -15.30084 -15.16847 -14.34682 -14.01767 -13.78463 -13.43804 -13.00121 -12.77216 -12.40472 -12.37429 -12.21064 -12.04455 -11.85844 -11.83023 -11.49375 -11.38953 -10.82539 -10.67566 -9.44512 -9.34647 -8.26832 -6.40673 1.31579 1.34101 1.44328 1.49215 2.08225 2.34985 2.82433 2.99236 3.03131 3.23570 3.46258 3.85294 3.91663 4.00590 4.04076 4.15964 4.58187 4.68745 4.77674 4.84543 4.98011 4.98631 5.10853 5.19141 5.24491 5.42084 5.48239 5.73841 5.95967 5.99960 6.44830 6.62663 6.69188 7.20272 7.35148 8.80299 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.009353 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.441884 B = 2992.838853 C = 3368.706734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.257 3.743 10 N -0.574 5.574 11 C 0.511 3.489 12 O -0.592 6.592 13 C 0.001 3.999 14 N -0.795 5.795 15 C -0.135 4.135 16 C -0.132 4.132 17 C 0.039 3.961 18 C -0.178 4.178 19 C -0.183 4.183 20 H 0.267 0.733 21 H 0.034 0.966 22 H -0.008 1.008 23 H 0.357 0.643 24 H 0.359 0.641 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.144 0.856 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 -13.044 5.421 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.137 3.863 10 N -0.302 5.302 11 C 0.299 3.701 12 O -0.473 6.473 13 C -0.096 4.096 14 N -0.334 5.334 15 C -0.174 4.174 16 C -0.170 4.170 17 C -0.065 4.065 18 C -0.215 4.215 19 C -0.222 4.222 20 H 0.076 0.924 21 H 0.052 0.948 22 H 0.010 0.990 23 H 0.175 0.825 24 H 0.177 0.823 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.107 0.893 29 H 0.176 0.824 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.534 -12.836 4.384 16.026 hybrid contribution -1.071 1.783 0.246 2.094 sum 7.463 -11.053 4.630 14.118 Atomic orbital electron populations 1.70049 1.07467 1.28053 1.51109 1.25825 0.95786 1.02918 0.94558 0.85412 0.78809 0.78905 0.77984 1.19194 1.20884 1.19281 1.21603 0.92944 0.91573 1.50867 0.93071 1.18848 0.87999 0.83679 0.95822 1.47666 1.43805 1.33576 1.05160 1.20915 0.81678 0.84483 0.83047 1.90628 1.60549 1.63001 1.33088 1.21262 0.96822 0.95117 0.96351 1.58661 1.50177 1.12442 1.12098 1.23178 1.00656 1.01188 0.92356 1.23342 0.99730 0.92512 1.01407 1.22508 1.05362 0.97722 0.80958 1.23369 0.96819 1.03857 0.97475 1.23545 0.95445 1.00699 1.02505 0.92415 0.94832 0.98983 0.82462 0.82257 0.90058 0.85352 0.83831 0.89279 0.82357 0.90884 0.84534 0.84295 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.53 -30.80 8.55 25.60 0.22 -30.58 16 8 H 0.05 2.97 7.25 -2.91 -0.02 2.95 16 9 C 0.26 14.11 4.73 85.63 0.41 14.52 16 10 N -0.57 -25.00 2.79 -802.14 -2.24 -27.24 16 11 C 0.51 22.61 7.28 87.66 0.64 23.25 16 12 O -0.59 -32.45 15.85 -3.03 -0.05 -32.50 16 13 C 0.00 0.04 2.70 2.78 0.01 0.05 16 14 N -0.79 -18.95 8.72 -154.52 -1.35 -20.29 16 15 C -0.14 -3.76 9.97 30.62 0.31 -3.46 16 16 C -0.13 -3.12 10.11 30.62 0.31 -2.81 16 17 C 0.04 1.19 4.26 44.99 0.19 1.38 16 18 C -0.18 -5.26 9.77 30.62 0.30 -4.96 16 19 C -0.18 -5.24 9.24 30.62 0.28 -4.96 16 20 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 21 H 0.03 1.86 5.89 -2.39 -0.01 1.84 16 22 H -0.01 -0.51 7.43 -2.39 -0.02 -0.53 16 23 H 0.36 9.52 5.61 -89.69 -0.50 9.01 16 24 H 0.36 6.00 7.41 -89.70 -0.66 5.34 16 25 H 0.08 2.67 7.67 -2.39 -0.02 2.65 16 26 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 27 H 0.14 2.25 8.14 -2.38 -0.02 2.23 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 29 H 0.16 3.53 5.06 -2.39 -0.01 3.52 16 30 H 0.07 2.82 6.06 -2.39 -0.01 2.81 16 31 H 0.14 2.83 8.14 -2.38 -0.02 2.81 16 32 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.80 6.83 -2.39 -0.02 2.78 16 Total: -1.00 -74.73 271.81 1.77 -72.96 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.03 Total: 22.27 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 3.12 Total: -6.64 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.30 Total: -103.69 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.73 1.77 -72.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083835101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.875 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds