Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35448 * 126.77962 * 2 1 4 4 C 1.41381 * 103.99025 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.80776 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47371 * 125.00005 * 5 4 3 7 7 C 1.53001 * 109.47406 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47159 * 65.00084 * 7 6 5 9 9 N 1.46902 * 109.46745 * 304.99899 * 7 6 5 10 10 C 1.50697 * 109.46995 * 185.00246 * 7 6 5 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 7 6 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 7 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 N 1.30183 * 106.39276 * 0.26479 * 4 3 2 19 19 O 1.20918 * 111.60202 * 359.53089 * 18 4 3 20 20 H 1.09001 * 109.47154 * 89.99969 * 1 2 3 21 21 H 1.09007 * 109.47572 * 209.99973 * 1 2 3 22 22 H 1.09004 * 109.47176 * 330.00051 * 1 2 3 23 23 H 1.08002 * 128.00832 * 359.97438 * 3 2 1 24 24 H 1.09007 * 109.46832 * 5.00156 * 5 4 3 25 25 H 1.09000 * 109.47354 * 245.00585 * 5 4 3 26 26 H 1.09000 * 109.47212 * 59.99975 * 6 5 4 27 27 H 1.09000 * 109.47355 * 300.00580 * 6 5 4 28 28 H 1.08997 * 109.47084 * 180.02562 * 8 7 6 29 29 H 1.09007 * 109.46899 * 300.00470 * 8 7 6 30 30 H 1.08993 * 109.47037 * 60.00122 * 8 7 6 31 31 H 1.00904 * 110.99840 * 176.04547 * 9 7 6 32 32 H 1.00902 * 111.00267 * 299.99906 * 9 7 6 33 33 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0014 6 6 5.7803 0.8446 1.1798 7 6 7.0997 1.6194 1.1793 8 6 6.8202 3.1026 1.4301 9 7 7.7612 1.4589 -0.1224 10 6 7.9957 1.0860 2.2673 11 1 7.6563 0.2786 2.8990 12 6 9.2470 1.6325 2.4595 13 7 9.6606 2.6154 1.6898 14 14 10.3547 0.9765 3.8130 15 1 9.6603 -0.1213 4.5324 16 1 11.6126 0.4601 3.2164 17 1 10.6715 2.0699 4.7666 18 7 3.4763 -0.7565 -0.0067 19 8 2.3095 -1.0737 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 2.0345 2.1270 -0.0004 24 1 4.7163 2.3668 0.0881 25 1 5.4537 1.1091 -0.9331 26 1 5.9850 -0.2223 1.0903 27 1 5.2477 1.0353 2.1114 28 1 7.7601 3.6545 1.4293 29 1 6.1720 3.4883 0.6432 30 1 6.3294 3.2215 2.3960 31 1 8.6031 2.0131 -0.1710 32 1 7.9566 0.4872 -0.3115 33 1 10.5410 2.9995 1.8248 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084354177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = 41.079680 kcal Electronic energy + Delta-G solvation = -15330.706577 eV Core-core repulsion = 12780.115765 eV Total energy + Delta-G solvation = -2550.590812 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.59730 -36.69075 -34.32689 -33.28653 -31.72517 -29.26812 -27.69843 -27.18778 -25.33930 -23.68417 -22.67006 -19.65144 -18.31575 -17.28494 -16.96840 -16.22920 -14.91296 -14.37845 -14.01396 -13.81544 -13.40951 -13.35032 -13.19370 -12.57421 -12.19289 -12.05598 -11.66645 -11.10960 -10.89269 -10.80732 -10.72943 -10.35595 -10.21125 -10.01521 -9.57402 -9.41247 -9.20374 -8.98212 -8.50730 -7.06580 -5.98380 -4.16118 1.70846 2.61530 3.24241 3.33184 3.34450 3.38135 4.37323 4.64507 4.66916 5.16403 5.20028 5.26139 5.35411 5.47483 5.75473 5.85245 6.08978 6.19716 6.22819 6.49566 6.63163 6.78192 6.86839 7.08369 7.14171 7.31839 7.63816 7.81572 8.05268 8.30048 8.64961 8.79395 9.05808 9.24097 9.56697 10.95304 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053254 B = 0.005769 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.660685 B = 4852.433070 C = 5045.841630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.050 4.050 3 C -0.235 4.235 4 C 0.035 3.965 5 C -0.037 4.037 6 C -0.087 4.087 7 C 0.231 3.769 8 C -0.128 4.128 9 N -0.848 5.848 10 C -0.538 4.538 11 H 0.052 0.948 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.366 5.366 19 O 0.089 5.911 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.167 0.833 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.018 0.982 30 H 0.026 0.974 31 H 0.352 0.648 32 H 0.311 0.689 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 -1.515 -3.477 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.114 4.114 3 C -0.256 4.256 4 C -0.124 4.124 5 C -0.075 4.075 6 C -0.126 4.126 7 C 0.139 3.861 8 C -0.186 4.186 9 N -0.377 5.377 10 C -0.578 4.578 11 H 0.070 0.930 12 C -0.135 4.135 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.210 1.210 18 N -0.072 5.072 19 O 0.025 5.975 20 H 0.102 0.898 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.184 0.816 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.207 -2.097 -3.812 14.858 hybrid contribution 1.143 0.111 1.480 1.873 sum -13.063 -1.986 -2.332 13.418 Atomic orbital electron populations 1.20251 0.84568 1.04239 1.03639 1.24431 0.96168 0.86798 1.03976 1.22482 0.91871 1.00712 1.10584 1.24163 0.98181 0.89848 1.00168 1.20170 0.87646 0.97438 1.02272 1.21522 0.96457 0.99822 0.94781 1.18289 0.88909 0.91759 0.87100 1.21756 1.01351 0.98737 0.96769 1.59471 1.33107 1.12241 1.32888 1.21967 1.00167 1.18233 1.17425 0.92975 1.24970 0.97912 0.94507 0.96085 1.69703 1.19380 1.25025 1.39020 0.86553 0.80499 0.78881 0.82126 1.19932 1.21073 1.21010 1.73845 0.96023 1.16878 1.20471 1.84817 1.11611 1.33142 1.67966 0.89832 0.90180 0.89403 0.81590 0.90307 0.88925 0.93200 0.93667 0.90171 0.96321 0.95523 0.83231 0.88056 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.00 0.38 -0.14 16 2 C -0.05 -0.64 7.49 -35.31 -0.26 -0.90 16 3 C -0.24 -3.34 11.05 -39.38 -0.44 -3.77 16 4 C 0.04 0.62 6.59 -82.10 -0.54 0.08 16 5 C -0.04 -0.71 5.35 -27.89 -0.15 -0.86 16 6 C -0.09 -1.91 4.32 -26.73 -0.12 -2.03 16 7 C 0.23 5.63 0.61 -132.75 -0.08 5.55 16 8 C -0.13 -3.07 8.27 37.16 0.31 -2.76 16 9 N -0.85 -20.02 7.86 -0.19 0.00 -20.02 16 10 C -0.54 -14.62 8.18 -34.44 -0.28 -14.90 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.07 1.80 5.22 -17.82 -0.09 1.70 16 13 N -0.89 -24.17 9.57 55.43 0.53 -23.64 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 N -0.37 -6.83 12.06 33.42 0.40 -6.43 16 19 O 0.09 1.42 11.20 17.16 0.19 1.62 16 20 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 24 H 0.08 1.42 6.56 -51.92 -0.34 1.08 16 25 H 0.09 1.83 7.47 -51.93 -0.39 1.45 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 2.10 6.08 -51.93 -0.32 1.79 16 29 H 0.02 0.39 6.56 -51.92 -0.34 0.05 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.35 8.93 6.98 -39.29 -0.27 8.65 16 32 H 0.31 7.25 8.99 -39.29 -0.35 6.90 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -28.81 274.69 -5.55 -34.36 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.51 Total: 11.80 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -1.28 Total: -18.03 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.93 Total: -50.09 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.19 Total: 1.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.81 -5.55 -34.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.435 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds