Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35448 * 126.77962 * 2 1 4 4 C 1.41381 * 103.99025 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.80776 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47371 * 125.00005 * 5 4 3 7 7 C 1.53001 * 109.47406 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47159 * 65.00084 * 7 6 5 9 9 N 1.46902 * 109.46745 * 304.99899 * 7 6 5 10 10 C 1.50697 * 109.46995 * 185.00246 * 7 6 5 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 7 6 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 7 6 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 7 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 N 1.30183 * 106.39276 * 0.26479 * 4 3 2 19 19 O 1.20918 * 111.60202 * 359.53089 * 18 4 3 20 20 H 1.09001 * 109.47154 * 89.99969 * 1 2 3 21 21 H 1.09007 * 109.47572 * 209.99973 * 1 2 3 22 22 H 1.09004 * 109.47176 * 330.00051 * 1 2 3 23 23 H 1.08002 * 128.00832 * 359.97438 * 3 2 1 24 24 H 1.09007 * 109.46832 * 5.00156 * 5 4 3 25 25 H 1.09000 * 109.47354 * 245.00585 * 5 4 3 26 26 H 1.09000 * 109.47212 * 59.99975 * 6 5 4 27 27 H 1.09000 * 109.47355 * 300.00580 * 6 5 4 28 28 H 1.08997 * 109.47084 * 180.02562 * 8 7 6 29 29 H 1.09007 * 109.46899 * 300.00470 * 8 7 6 30 30 H 1.08993 * 109.47037 * 60.00122 * 8 7 6 31 31 H 1.00904 * 110.99840 * 176.04547 * 9 7 6 32 32 H 1.00902 * 111.00267 * 299.99906 * 9 7 6 33 33 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0014 6 6 5.7803 0.8446 1.1798 7 6 7.0997 1.6194 1.1793 8 6 6.8202 3.1026 1.4301 9 7 7.7612 1.4589 -0.1224 10 6 7.9957 1.0860 2.2673 11 1 7.6563 0.2786 2.8990 12 6 9.2470 1.6325 2.4595 13 7 9.6606 2.6154 1.6898 14 14 10.3547 0.9765 3.8130 15 1 9.6603 -0.1213 4.5324 16 1 11.6126 0.4601 3.2164 17 1 10.6715 2.0699 4.7666 18 7 3.4763 -0.7565 -0.0067 19 8 2.3095 -1.0737 -0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 2.0345 2.1270 -0.0004 24 1 4.7163 2.3668 0.0881 25 1 5.4537 1.1091 -0.9331 26 1 5.9850 -0.2223 1.0903 27 1 5.2477 1.0353 2.1114 28 1 7.7601 3.6545 1.4293 29 1 6.1720 3.4883 0.6432 30 1 6.3294 3.2215 2.3960 31 1 8.6031 2.0131 -0.1710 32 1 7.9566 0.4872 -0.3115 33 1 10.5410 2.9995 1.8248 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084354177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = 22.616579 kcal Electronic energy + Delta-G solvation = -15331.507197 eV Core-core repulsion = 12780.115765 eV Total energy + Delta-G solvation = -2551.391432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.82936 -38.52695 -35.76340 -34.34414 -33.58832 -30.95716 -29.08343 -28.55840 -27.37024 -25.36056 -23.91014 -21.07794 -20.03498 -18.54613 -18.37296 -18.01898 -16.86408 -15.96360 -15.49588 -15.44501 -14.96150 -14.47854 -13.99817 -13.85299 -13.82786 -13.43472 -13.11781 -12.95780 -12.71885 -12.60455 -12.33803 -12.20954 -12.09496 -11.85079 -11.25345 -11.17331 -10.74775 -10.55366 -10.16584 -9.05945 -8.02825 -6.28796 0.63785 1.34000 1.36493 1.38606 1.47869 2.37571 2.38874 3.10055 3.39104 3.63977 4.20331 4.30570 4.36649 4.42730 4.56447 4.70448 4.78751 4.80677 4.92034 4.97650 5.08673 5.14045 5.23241 5.32494 5.38419 5.45115 5.60008 5.79829 6.06392 6.26005 6.72411 7.05804 7.20732 7.47666 7.48199 8.86870 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053254 B = 0.005769 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.660685 B = 4852.433070 C = 5045.841630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.034 4.034 3 C -0.244 4.244 4 C 0.010 3.990 5 C -0.024 4.024 6 C -0.074 4.074 7 C 0.224 3.776 8 C -0.119 4.119 9 N -0.835 5.835 10 C -0.562 4.562 11 H 0.034 0.966 12 C 0.030 3.970 13 N -0.902 5.902 14 Si 0.947 3.053 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.279 1.279 18 N -0.405 5.405 19 O 0.083 5.917 20 H 0.105 0.895 21 H 0.093 0.907 22 H 0.110 0.890 23 H 0.195 0.805 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.024 0.976 31 H 0.343 0.657 32 H 0.311 0.689 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 -1.127 -3.531 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C -0.266 4.266 4 C -0.148 4.148 5 C -0.062 4.062 6 C -0.113 4.113 7 C 0.132 3.868 8 C -0.177 4.177 9 N -0.363 5.363 10 C -0.602 4.602 11 H 0.053 0.947 12 C -0.170 4.170 13 N -0.542 5.542 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.206 1.206 17 H -0.205 1.205 18 N -0.111 5.111 19 O 0.018 5.982 20 H 0.123 0.877 21 H 0.112 0.888 22 H 0.129 0.871 23 H 0.212 0.788 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.157 0.843 32 H 0.119 0.881 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.916 -1.707 -3.872 16.469 hybrid contribution 1.597 -0.030 1.489 2.184 sum -14.319 -1.738 -2.384 14.619 Atomic orbital electron populations 1.20561 0.80409 1.06036 1.05534 1.25379 0.98146 0.85276 1.00953 1.22800 0.90239 1.02500 1.11024 1.24152 0.98985 0.90085 1.01581 1.19904 0.88002 0.98152 1.00096 1.21304 0.95907 0.98180 0.95926 1.18370 0.89593 0.92289 0.86524 1.21625 1.00518 0.98071 0.97471 1.59469 1.32371 1.12027 1.32402 1.22188 1.01339 1.18318 1.18367 0.94731 1.25542 0.98868 0.94751 0.97833 1.69788 1.19618 1.25205 1.39569 0.85688 0.78859 0.78176 0.79880 1.20497 1.20554 1.20465 1.73835 0.97629 1.17657 1.22025 1.84760 1.11230 1.34353 1.67814 0.87661 0.88830 0.87128 0.78825 0.89189 0.90059 0.95249 0.94376 0.92445 0.94216 0.95640 0.84268 0.88078 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.45 71.23 0.74 0.01 16 2 C -0.03 -0.78 7.49 25.04 0.19 -0.59 16 3 C -0.24 -6.40 11.05 22.40 0.25 -6.15 16 4 C 0.01 0.34 6.59 43.58 0.29 0.63 16 5 C -0.02 -0.89 5.35 29.85 0.16 -0.73 16 6 C -0.07 -3.31 4.32 30.59 0.13 -3.18 16 7 C 0.22 11.00 0.61 2.78 0.00 11.00 16 8 C -0.12 -5.65 8.27 71.98 0.60 -5.06 16 9 N -0.83 -39.72 7.86 -154.52 -1.21 -40.94 16 10 C -0.56 -30.96 8.18 25.60 0.21 -30.75 16 11 H 0.03 1.97 7.74 -2.92 -0.02 1.95 16 12 C 0.03 1.64 5.22 84.66 0.44 2.08 16 13 N -0.90 -48.83 9.57 21.45 0.21 -48.62 16 14 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 N -0.40 -15.10 12.06 -49.55 -0.60 -15.70 16 19 O 0.08 2.56 11.20 71.57 0.80 3.37 16 20 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 21 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 23 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 24 H 0.09 3.14 6.56 -2.38 -0.02 3.13 16 25 H 0.08 3.23 7.47 -2.39 -0.02 3.21 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 3.00 6.08 -2.39 -0.01 2.98 16 29 H 0.04 1.67 6.56 -2.38 -0.02 1.66 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.34 17.49 6.98 -89.69 -0.63 16.86 16 32 H 0.31 14.72 8.99 -89.69 -0.81 13.91 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -62.12 274.69 3.92 -58.20 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.31 Total: 30.76 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.01 Total: -32.75 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -1.61 Total: -105.26 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.80 Total: 3.37 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.12 3.92 -58.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084354177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.819 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds