Wall clock time and date at job start Mon Mar 30 2020 03:23:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31422 * 1
3 3 Si 1.86796 * 120.00114 * 2 1
4 4 H 1.48502 * 109.47016 * 240.00186 * 3 2 1
5 5 H 1.48504 * 109.47115 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47275 * 119.99944 * 3 2 1
7 7 C 1.38949 * 119.99980 * 180.02562 * 2 1 3
8 8 H 1.07990 * 119.99997 * 170.45482 * 7 2 1
9 9 N 1.37104 * 119.99745 * 350.45306 * 7 2 1
10 10 C 1.46939 * 124.35096 * 349.95280 * 9 7 2
11 11 C 1.53726 * 105.33080 * 196.30379 * 10 9 7
12 12 C 1.53905 * 102.55656 * 335.38473 * 11 10 9
13 13 C 1.34503 * 124.34766 * 169.91449 * 9 7 2
14 14 O 1.21292 * 124.94511 * 359.69702 * 13 9 7
15 15 C 1.52241 * 110.79427 * 93.51180 * 11 10 9
16 16 C 1.53202 * 109.35470 * 179.30006 * 15 11 10
17 17 N 1.46855 * 109.42075 * 302.13627 * 16 15 11
18 18 C 1.46860 * 111.33696 * 62.33578 * 17 16 15
19 19 C 1.52240 * 110.80080 * 217.25803 * 11 10 9
20 20 H 0.96998 * 119.99409 * 359.97438 * 1 2 3
21 21 H 1.08997 * 110.26767 * 77.34152 * 10 9 7
22 22 H 1.08997 * 110.27368 * 315.27331 * 10 9 7
23 23 H 1.09008 * 110.51443 * 142.67673 * 12 11 10
24 24 H 1.09002 * 110.51727 * 265.39579 * 12 11 10
25 25 H 1.09001 * 109.49342 * 299.26063 * 15 11 10
26 26 H 1.08996 * 109.49375 * 59.33973 * 15 11 10
27 27 H 1.09007 * 109.47896 * 182.15251 * 16 15 11
28 28 H 1.08998 * 109.48736 * 62.12760 * 16 15 11
29 29 H 1.00896 * 110.99937 * 298.13251 * 17 16 15
30 30 H 1.09007 * 109.47972 * 177.67518 * 18 17 16
31 31 H 1.08993 * 109.49545 * 57.64886 * 18 17 16
32 32 H 1.08996 * 109.49268 * 300.66277 * 19 11 10
33 33 H 1.08998 * 109.49487 * 60.73618 * 19 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3142 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 3.1020 1.6963 -1.2125
5 1 1.2832 2.7465 -0.0006
6 1 3.1019 1.6964 1.2124
7 6 2.0090 -1.2033 -0.0005
8 1 3.0777 -1.2097 -0.1556
9 7 1.3376 -2.3825 0.1959
10 6 -0.0652 -2.4768 0.6227
11 6 -0.2474 -3.9256 1.1033
12 6 0.8560 -4.6743 0.3347
13 6 1.8784 -3.6017 0.0219
14 8 3.0190 -3.8116 -0.3334
15 6 -0.0212 -4.0293 2.6052
16 6 -0.2277 -5.4804 3.0508
17 7 -1.5814 -5.9159 2.6840
18 6 -1.7749 -5.8905 1.2285
19 6 -1.6227 -4.4537 0.7193
20 1 -0.4849 0.8401 0.0004
21 1 -0.7298 -2.2708 -0.2163
22 1 -0.2593 -1.7808 1.4388
23 1 1.2966 -5.4514 0.9594
24 1 0.4577 -5.1023 -0.5852
25 1 0.9959 -3.7173 2.8423
26 1 -0.7301 -3.3849 3.1251
27 1 -0.1038 -5.5500 4.1315
28 1 0.5055 -6.1196 2.5590
29 1 -2.2799 -5.3577 3.1515
30 1 -2.7728 -6.2575 0.9880
31 1 -1.0292 -6.5262 0.7512
32 1 -2.3919 -3.8253 1.1682
33 1 -1.7281 -4.4391 -0.3655
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084415663.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:36
Heat of formation + Delta-G solvation = -37.692949 kcal
Electronic energy + Delta-G solvation = -16272.379913 eV
Core-core repulsion = 13718.373264 eV
Total energy + Delta-G solvation = -2554.006650 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.20647 -37.50810 -34.92734 -33.17434 -30.97510 -30.70407 -27.70106 -26.11975
-24.17698 -22.79531 -21.79362 -19.36705 -18.64072 -17.02835 -15.88236 -15.17780
-14.78925 -14.40607 -14.23071 -14.12937 -13.62624 -13.49714 -12.82269 -12.42184
-12.22940 -11.93950 -11.75873 -11.50830 -11.08588 -10.97310 -10.87495 -10.62823
-10.46896 -10.25054 -10.02969 -9.98397 -9.12021 -8.35343 -8.20456 -7.82461
-6.39212 -3.86721 3.14484 3.20281 3.24354 3.88852 4.09336 4.44627
4.82717 5.02433 5.07686 5.15066 5.20104 5.35591 5.46160 5.57031
5.62434 5.84916 5.95038 6.00467 6.09625 6.13005 6.25333 6.27731
6.44350 6.54443 6.66143 7.00130 7.13490 7.17012 7.46925 7.48572
7.91318 8.46672 9.11542 9.31252 10.04225 10.67623
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.039340 B = 0.008906 C = 0.008125
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 711.574098 B = 3143.027531 C = 3445.404578
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.029 3.971
3 Si 0.930 3.070
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.273 1.273
7 C -0.301 4.301
8 H 0.101 0.899
9 N -0.442 5.442
10 C 0.150 3.850
11 C -0.085 4.085
12 C -0.135 4.135
13 C 0.441 3.559
14 O -0.595 6.595
15 C -0.137 4.137
16 C 0.056 3.944
17 N -0.687 5.687
18 C 0.057 3.943
19 C -0.136 4.136
20 H 0.269 0.731
21 H 0.070 0.930
22 H 0.076 0.924
23 H 0.081 0.919
24 H 0.083 0.917
25 H 0.070 0.930
26 H 0.063 0.937
27 H 0.071 0.929
28 H 0.074 0.926
29 H 0.337 0.663
30 H 0.071 0.929
31 H 0.073 0.927
32 H 0.064 0.936
33 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.771 -6.356 4.810 10.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.173 4.173
3 Si 0.756 3.244
4 H -0.198 1.198
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.429 4.429
8 H 0.118 0.882
9 N -0.160 5.160
10 C 0.026 3.974
11 C -0.086 4.086
12 C -0.176 4.176
13 C 0.229 3.771
14 O -0.481 6.481
15 C -0.177 4.177
16 C -0.074 4.074
17 N -0.315 5.315
18 C -0.073 4.073
19 C -0.176 4.176
20 H 0.079 0.921
21 H 0.088 0.912
22 H 0.095 0.905
23 H 0.099 0.901
24 H 0.101 0.899
25 H 0.089 0.911
26 H 0.082 0.918
27 H 0.090 0.910
28 H 0.092 0.908
29 H 0.154 0.846
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.083 0.917
33 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -6.184 -6.884 4.647 10.355
hybrid contribution 0.178 2.015 -0.240 2.037
sum -6.005 -4.869 4.407 8.899
Atomic orbital electron populations
1.69912 1.05788 1.27685 1.49281 1.25276 0.95687 0.99645 0.96741
0.85937 0.78889 0.80408 0.79149 1.19777 1.20826 1.19873 1.19590
0.93389 0.82210 1.47676 0.88163 1.43985 1.10504 1.04865 1.56617
1.21802 0.83991 0.91294 1.00277 1.21151 0.94611 0.97812 0.95049
1.22236 0.96380 0.98273 1.00694 1.20343 0.88355 0.84427 0.83963
1.90515 1.19509 1.84067 1.54042 1.22068 1.02805 0.97800 0.94992
1.22092 0.90771 0.94241 1.00259 1.60673 1.04527 1.58458 1.07877
1.22061 1.01640 0.95538 0.88019 1.22076 0.96280 0.97389 1.01818
0.92055 0.91186 0.90526 0.90099 0.89869 0.91146 0.91831 0.91039
0.90774 0.84586 0.91066 0.90869 0.91735 0.91164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.39 10.51 55.50 0.58 -22.81 16
2 C 0.03 0.77 5.40 -17.46 -0.09 0.67 16
3 Si 0.93 20.74 29.56 -169.99 -5.03 15.71 16
4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16
6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
7 C -0.30 -8.50 9.87 -14.93 -0.15 -8.65 16
8 H 0.10 2.93 7.72 -52.49 -0.41 2.53 16
9 N -0.44 -11.58 3.06 -113.84 -0.35 -11.93 16
10 C 0.15 3.34 4.47 -3.43 -0.02 3.32 16
11 C -0.09 -1.47 0.60 -154.43 -0.09 -1.57 16
12 C -0.14 -2.60 5.03 -27.05 -0.14 -2.73 16
13 C 0.44 11.27 7.98 -10.74 -0.09 11.19 16
14 O -0.60 -17.42 17.61 5.55 0.10 -17.32 16
15 C -0.14 -2.14 4.75 -27.01 -0.13 -2.27 16
16 C 0.06 0.73 6.39 -3.74 -0.02 0.71 16
17 N -0.69 -8.35 6.85 -113.61 -0.78 -9.13 16
18 C 0.06 0.69 6.40 -3.74 -0.02 0.67 16
19 C -0.14 -1.92 4.67 -27.02 -0.13 -2.04 16
20 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16
21 H 0.07 1.65 7.38 -51.93 -0.38 1.27 16
22 H 0.08 1.81 7.08 -51.93 -0.37 1.44 16
23 H 0.08 1.44 6.31 -51.92 -0.33 1.11 16
24 H 0.08 1.49 7.79 -51.93 -0.40 1.08 16
25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
28 H 0.07 1.02 6.60 -51.93 -0.34 0.68 16
29 H 0.34 3.70 8.85 -39.29 -0.35 3.35 16
30 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16
31 H 0.07 0.93 7.58 -51.93 -0.39 0.53 16
32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
33 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16
LS Contribution 260.82 15.07 3.93 3.93
Total: -1.00 -30.75 260.82 -7.05 -37.80
By element:
Atomic # 1 Polarization: 9.08 SS G_CDS: -4.64 Total: 4.44 kcal
Atomic # 6 Polarization: 0.17 SS G_CDS: -0.87 Total: -0.70 kcal
Atomic # 7 Polarization: -43.32 SS G_CDS: -0.54 Total: -43.86 kcal
Atomic # 8 Polarization: -17.42 SS G_CDS: 0.10 Total: -17.32 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -30.75 -7.05 -37.80 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084415663.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.108 kcal
(2) G-P(sol) polarization free energy of solvation -30.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds