Wall clock time and date at job start Mon Mar 30 2020 03:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47016 * 240.00186 * 3 2 1 5 5 H 1.48504 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47275 * 119.99944 * 3 2 1 7 7 C 1.38949 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99997 * 170.45482 * 7 2 1 9 9 N 1.37104 * 119.99745 * 350.45306 * 7 2 1 10 10 C 1.46939 * 124.35096 * 349.95280 * 9 7 2 11 11 C 1.53726 * 105.33080 * 196.30379 * 10 9 7 12 12 C 1.53905 * 102.55656 * 335.38473 * 11 10 9 13 13 C 1.34503 * 124.34766 * 169.91449 * 9 7 2 14 14 O 1.21292 * 124.94511 * 359.69702 * 13 9 7 15 15 C 1.52241 * 110.79427 * 93.51180 * 11 10 9 16 16 C 1.53202 * 109.35470 * 179.30006 * 15 11 10 17 17 N 1.46855 * 109.42075 * 302.13627 * 16 15 11 18 18 C 1.46860 * 111.33696 * 62.33578 * 17 16 15 19 19 C 1.52240 * 110.80080 * 217.25803 * 11 10 9 20 20 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 21 21 H 1.08997 * 110.26767 * 77.34152 * 10 9 7 22 22 H 1.08997 * 110.27368 * 315.27331 * 10 9 7 23 23 H 1.09008 * 110.51443 * 142.67673 * 12 11 10 24 24 H 1.09002 * 110.51727 * 265.39579 * 12 11 10 25 25 H 1.09001 * 109.49342 * 299.26063 * 15 11 10 26 26 H 1.08996 * 109.49375 * 59.33973 * 15 11 10 27 27 H 1.09007 * 109.47896 * 182.15251 * 16 15 11 28 28 H 1.08998 * 109.48736 * 62.12760 * 16 15 11 29 29 H 1.00896 * 110.99937 * 298.13251 * 17 16 15 30 30 H 1.09007 * 109.47972 * 177.67518 * 18 17 16 31 31 H 1.08993 * 109.49545 * 57.64886 * 18 17 16 32 32 H 1.08996 * 109.49268 * 300.66277 * 19 11 10 33 33 H 1.08998 * 109.49487 * 60.73618 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0777 -1.2097 -0.1556 9 7 1.3376 -2.3825 0.1959 10 6 -0.0652 -2.4768 0.6227 11 6 -0.2474 -3.9256 1.1033 12 6 0.8560 -4.6743 0.3347 13 6 1.8784 -3.6017 0.0219 14 8 3.0190 -3.8116 -0.3334 15 6 -0.0212 -4.0293 2.6052 16 6 -0.2277 -5.4804 3.0508 17 7 -1.5814 -5.9159 2.6840 18 6 -1.7749 -5.8905 1.2285 19 6 -1.6227 -4.4537 0.7193 20 1 -0.4849 0.8401 0.0004 21 1 -0.7298 -2.2708 -0.2163 22 1 -0.2593 -1.7808 1.4388 23 1 1.2966 -5.4514 0.9594 24 1 0.4577 -5.1023 -0.5852 25 1 0.9959 -3.7173 2.8423 26 1 -0.7301 -3.3849 3.1251 27 1 -0.1038 -5.5500 4.1315 28 1 0.5055 -6.1196 2.5590 29 1 -2.2799 -5.3577 3.1515 30 1 -2.7728 -6.2575 0.9880 31 1 -1.0292 -6.5262 0.7512 32 1 -2.3919 -3.8253 1.1682 33 1 -1.7281 -4.4391 -0.3655 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084415663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:36 Heat of formation + Delta-G solvation = -37.692949 kcal Electronic energy + Delta-G solvation = -16272.379913 eV Core-core repulsion = 13718.373264 eV Total energy + Delta-G solvation = -2554.006650 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20647 -37.50810 -34.92734 -33.17434 -30.97510 -30.70407 -27.70106 -26.11975 -24.17698 -22.79531 -21.79362 -19.36705 -18.64072 -17.02835 -15.88236 -15.17780 -14.78925 -14.40607 -14.23071 -14.12937 -13.62624 -13.49714 -12.82269 -12.42184 -12.22940 -11.93950 -11.75873 -11.50830 -11.08588 -10.97310 -10.87495 -10.62823 -10.46896 -10.25054 -10.02969 -9.98397 -9.12021 -8.35343 -8.20456 -7.82461 -6.39212 -3.86721 3.14484 3.20281 3.24354 3.88852 4.09336 4.44627 4.82717 5.02433 5.07686 5.15066 5.20104 5.35591 5.46160 5.57031 5.62434 5.84916 5.95038 6.00467 6.09625 6.13005 6.25333 6.27731 6.44350 6.54443 6.66143 7.00130 7.13490 7.17012 7.46925 7.48572 7.91318 8.46672 9.11542 9.31252 10.04225 10.67623 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.008906 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.574098 B = 3143.027531 C = 3445.404578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.029 3.971 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.101 0.899 9 N -0.442 5.442 10 C 0.150 3.850 11 C -0.085 4.085 12 C -0.135 4.135 13 C 0.441 3.559 14 O -0.595 6.595 15 C -0.137 4.137 16 C 0.056 3.944 17 N -0.687 5.687 18 C 0.057 3.943 19 C -0.136 4.136 20 H 0.269 0.731 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.337 0.663 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 -6.356 4.810 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.756 3.244 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.118 0.882 9 N -0.160 5.160 10 C 0.026 3.974 11 C -0.086 4.086 12 C -0.176 4.176 13 C 0.229 3.771 14 O -0.481 6.481 15 C -0.177 4.177 16 C -0.074 4.074 17 N -0.315 5.315 18 C -0.073 4.073 19 C -0.176 4.176 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.184 -6.884 4.647 10.355 hybrid contribution 0.178 2.015 -0.240 2.037 sum -6.005 -4.869 4.407 8.899 Atomic orbital electron populations 1.69912 1.05788 1.27685 1.49281 1.25276 0.95687 0.99645 0.96741 0.85937 0.78889 0.80408 0.79149 1.19777 1.20826 1.19873 1.19590 0.93389 0.82210 1.47676 0.88163 1.43985 1.10504 1.04865 1.56617 1.21802 0.83991 0.91294 1.00277 1.21151 0.94611 0.97812 0.95049 1.22236 0.96380 0.98273 1.00694 1.20343 0.88355 0.84427 0.83963 1.90515 1.19509 1.84067 1.54042 1.22068 1.02805 0.97800 0.94992 1.22092 0.90771 0.94241 1.00259 1.60673 1.04527 1.58458 1.07877 1.22061 1.01640 0.95538 0.88019 1.22076 0.96280 0.97389 1.01818 0.92055 0.91186 0.90526 0.90099 0.89869 0.91146 0.91831 0.91039 0.90774 0.84586 0.91066 0.90869 0.91735 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 10.51 55.50 0.58 -22.81 16 2 C 0.03 0.77 5.40 -17.46 -0.09 0.67 16 3 Si 0.93 20.74 29.56 -169.99 -5.03 15.71 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.50 9.87 -14.93 -0.15 -8.65 16 8 H 0.10 2.93 7.72 -52.49 -0.41 2.53 16 9 N -0.44 -11.58 3.06 -113.84 -0.35 -11.93 16 10 C 0.15 3.34 4.47 -3.43 -0.02 3.32 16 11 C -0.09 -1.47 0.60 -154.43 -0.09 -1.57 16 12 C -0.14 -2.60 5.03 -27.05 -0.14 -2.73 16 13 C 0.44 11.27 7.98 -10.74 -0.09 11.19 16 14 O -0.60 -17.42 17.61 5.55 0.10 -17.32 16 15 C -0.14 -2.14 4.75 -27.01 -0.13 -2.27 16 16 C 0.06 0.73 6.39 -3.74 -0.02 0.71 16 17 N -0.69 -8.35 6.85 -113.61 -0.78 -9.13 16 18 C 0.06 0.69 6.40 -3.74 -0.02 0.67 16 19 C -0.14 -1.92 4.67 -27.02 -0.13 -2.04 16 20 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 21 H 0.07 1.65 7.38 -51.93 -0.38 1.27 16 22 H 0.08 1.81 7.08 -51.93 -0.37 1.44 16 23 H 0.08 1.44 6.31 -51.92 -0.33 1.11 16 24 H 0.08 1.49 7.79 -51.93 -0.40 1.08 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.02 6.60 -51.93 -0.34 0.68 16 29 H 0.34 3.70 8.85 -39.29 -0.35 3.35 16 30 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.07 0.93 7.58 -51.93 -0.39 0.53 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -30.75 260.82 -7.05 -37.80 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.64 Total: 4.44 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.87 Total: -0.70 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.54 Total: -43.86 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.10 Total: -17.32 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.75 -7.05 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084415663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.108 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds