Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47016 * 240.00186 * 3 2 1 5 5 H 1.48504 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47275 * 119.99944 * 3 2 1 7 7 C 1.38949 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99997 * 170.45482 * 7 2 1 9 9 N 1.37104 * 119.99745 * 350.45306 * 7 2 1 10 10 C 1.46939 * 124.35096 * 349.95280 * 9 7 2 11 11 C 1.53726 * 105.33080 * 196.30379 * 10 9 7 12 12 C 1.53905 * 102.55656 * 335.38473 * 11 10 9 13 13 C 1.34503 * 124.34766 * 169.91449 * 9 7 2 14 14 O 1.21292 * 124.94511 * 359.69702 * 13 9 7 15 15 C 1.52241 * 110.79427 * 93.51180 * 11 10 9 16 16 C 1.53202 * 109.35470 * 179.30006 * 15 11 10 17 17 N 1.46855 * 109.42075 * 302.13627 * 16 15 11 18 18 C 1.46860 * 111.33696 * 62.33578 * 17 16 15 19 19 C 1.52240 * 110.80080 * 217.25803 * 11 10 9 20 20 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 21 21 H 1.08997 * 110.26767 * 77.34152 * 10 9 7 22 22 H 1.08997 * 110.27368 * 315.27331 * 10 9 7 23 23 H 1.09008 * 110.51443 * 142.67673 * 12 11 10 24 24 H 1.09002 * 110.51727 * 265.39579 * 12 11 10 25 25 H 1.09001 * 109.49342 * 299.26063 * 15 11 10 26 26 H 1.08996 * 109.49375 * 59.33973 * 15 11 10 27 27 H 1.09007 * 109.47896 * 182.15251 * 16 15 11 28 28 H 1.08998 * 109.48736 * 62.12760 * 16 15 11 29 29 H 1.00896 * 110.99937 * 298.13251 * 17 16 15 30 30 H 1.09007 * 109.47972 * 177.67518 * 18 17 16 31 31 H 1.08993 * 109.49545 * 57.64886 * 18 17 16 32 32 H 1.08996 * 109.49268 * 300.66277 * 19 11 10 33 33 H 1.08998 * 109.49487 * 60.73618 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0777 -1.2097 -0.1556 9 7 1.3376 -2.3825 0.1959 10 6 -0.0652 -2.4768 0.6227 11 6 -0.2474 -3.9256 1.1033 12 6 0.8560 -4.6743 0.3347 13 6 1.8784 -3.6017 0.0219 14 8 3.0190 -3.8116 -0.3334 15 6 -0.0212 -4.0293 2.6052 16 6 -0.2277 -5.4804 3.0508 17 7 -1.5814 -5.9159 2.6840 18 6 -1.7749 -5.8905 1.2285 19 6 -1.6227 -4.4537 0.7193 20 1 -0.4849 0.8401 0.0004 21 1 -0.7298 -2.2708 -0.2163 22 1 -0.2593 -1.7808 1.4388 23 1 1.2966 -5.4514 0.9594 24 1 0.4577 -5.1023 -0.5852 25 1 0.9959 -3.7173 2.8423 26 1 -0.7301 -3.3849 3.1251 27 1 -0.1038 -5.5500 4.1315 28 1 0.5055 -6.1196 2.5590 29 1 -2.2799 -5.3577 3.1515 30 1 -2.7728 -6.2575 0.9880 31 1 -1.0292 -6.5262 0.7512 32 1 -2.3919 -3.8253 1.1682 33 1 -1.7281 -4.4391 -0.3655 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084415663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = -60.020289 kcal Electronic energy + Delta-G solvation = -16273.348099 eV Core-core repulsion = 13718.373264 eV Total energy + Delta-G solvation = -2554.974836 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80583 -39.08425 -36.89023 -34.90478 -32.75755 -31.83459 -29.33694 -27.89328 -25.97302 -23.90524 -23.06724 -21.23683 -20.08789 -19.06084 -17.47654 -16.81142 -16.41007 -16.08563 -15.66998 -15.55701 -15.16905 -14.93423 -14.36715 -14.23303 -13.77709 -13.42588 -13.21396 -13.08371 -12.84760 -12.53358 -12.35951 -12.19671 -12.10224 -11.86622 -11.43244 -11.35663 -11.03074 -10.37440 -9.89727 -9.24791 -8.44178 -6.02376 1.32930 1.35818 1.46881 1.91837 2.21099 3.02104 3.15780 3.44686 3.52583 3.66688 3.76751 4.19296 4.21291 4.25114 4.46938 4.56759 4.65244 4.74675 4.85897 4.92868 4.97401 5.04206 5.11862 5.18457 5.24088 5.31467 5.40967 5.45544 5.85761 6.13554 6.40637 6.59818 7.04677 7.27167 7.99507 8.59922 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.008906 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.574098 B = 3143.027531 C = 3445.404578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.350 4.350 8 H 0.074 0.926 9 N -0.456 5.456 10 C 0.156 3.844 11 C -0.071 4.071 12 C -0.119 4.119 13 C 0.419 3.581 14 O -0.645 6.645 15 C -0.134 4.134 16 C 0.065 3.935 17 N -0.682 5.682 18 C 0.063 3.937 19 C -0.130 4.130 20 H 0.277 0.723 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.348 0.652 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 -6.840 5.643 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.202 4.202 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.477 4.477 8 H 0.092 0.908 9 N -0.173 5.173 10 C 0.033 3.967 11 C -0.072 4.072 12 C -0.159 4.159 13 C 0.208 3.792 14 O -0.536 6.536 15 C -0.173 4.173 16 C -0.065 4.065 17 N -0.311 5.311 18 C -0.067 4.067 19 C -0.169 4.169 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.166 0.834 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.079 -7.374 5.496 12.242 hybrid contribution 0.727 2.231 -0.520 2.403 sum -7.352 -5.143 4.976 10.260 Atomic orbital electron populations 1.69996 1.06590 1.28952 1.47700 1.26088 0.96681 1.02262 0.95214 0.84991 0.77946 0.76371 0.79032 1.19837 1.18900 1.19444 1.19618 0.92959 0.84207 1.50948 0.90794 1.44313 1.11948 1.04757 1.56240 1.21784 0.81582 0.94431 0.98881 1.21134 0.96173 0.93899 0.95961 1.22192 0.94991 0.96645 1.02105 1.21448 0.88790 0.85788 0.83143 1.90456 1.21928 1.85041 1.56137 1.22065 1.01383 1.00197 0.93696 1.22027 0.91368 0.91748 1.01319 1.60678 1.04125 1.58329 1.07950 1.22087 1.03130 0.93695 0.87788 1.22073 0.93819 0.98989 1.02056 0.91322 0.92822 0.92381 0.88286 0.88066 0.93918 0.91010 0.89208 0.91228 0.83414 0.88513 0.91016 0.90823 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.25 10.51 21.66 0.23 -47.02 16 2 C 0.00 -0.02 5.40 84.92 0.46 0.44 16 3 Si 0.99 42.62 29.56 68.60 2.03 44.65 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.35 -20.60 9.87 84.04 0.83 -19.77 16 8 H 0.07 4.61 7.72 -2.92 -0.02 4.59 16 9 N -0.46 -24.77 3.06 -632.63 -1.94 -26.70 16 10 C 0.16 7.04 4.47 86.54 0.39 7.43 16 11 C -0.07 -2.37 0.60 -52.13 -0.03 -2.40 16 12 C -0.12 -4.50 5.03 30.39 0.15 -4.35 16 13 C 0.42 22.09 7.98 87.94 0.70 22.79 16 14 O -0.65 -39.50 17.61 -3.07 -0.05 -39.55 16 15 C -0.13 -4.00 4.75 30.41 0.14 -3.86 16 16 C 0.07 1.52 6.39 86.38 0.55 2.07 16 17 N -0.68 -13.94 6.85 -513.36 -3.52 -17.45 16 18 C 0.06 1.28 6.40 86.38 0.55 1.83 16 19 C -0.13 -3.30 4.67 30.41 0.14 -3.16 16 20 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 21 H 0.05 2.56 7.38 -2.39 -0.02 2.54 16 22 H 0.06 2.79 7.08 -2.39 -0.02 2.77 16 23 H 0.10 3.39 6.31 -2.38 -0.02 3.38 16 24 H 0.10 3.46 7.79 -2.39 -0.02 3.44 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.07 1.72 6.60 -2.39 -0.02 1.70 16 29 H 0.35 6.17 8.85 -89.70 -0.79 5.38 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.82 8.03 -2.39 -0.02 1.80 16 Total: -1.00 -68.95 260.82 0.95 -68.00 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.32 Total: 17.06 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 3.89 Total: 1.02 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -5.23 Total: -91.18 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.05 Total: -39.55 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -68.95 0.95 -68.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084415663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.982 kcal (2) G-P(sol) polarization free energy of solvation -68.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds