Wall clock time and date at job start Mon Mar 30 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09005 * 110.34394 * 57.71313 * 14 12 11 16 16 C 1.51098 * 110.38571 * 295.30440 * 14 12 11 17 17 C 1.30528 * 111.10445 * 257.62733 * 16 14 12 18 18 C 1.51103 * 111.10628 * 359.97438 * 17 16 14 19 19 H 1.08990 * 110.48531 * 224.70831 * 18 17 16 20 20 N 1.46898 * 110.38285 * 102.37350 * 18 17 16 21 21 C 1.54633 * 110.38763 * 180.02562 * 14 12 11 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 28 28 H 1.07997 * 124.45175 * 77.60498 * 16 14 12 29 29 H 1.08006 * 124.44472 * 180.02562 * 17 16 14 30 30 H 1.00898 * 110.99713 * 64.70705 * 20 18 17 31 31 H 1.00900 * 111.00076 * 188.65013 * 20 18 17 32 32 H 1.08997 * 111.03647 * 212.21310 * 21 14 12 33 33 H 1.09006 * 111.03733 * 336.14606 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.3996 -6.0979 0.0014 14 6 1.4333 -7.4031 0.0018 15 1 0.7714 -7.4586 -0.8625 16 6 0.6453 -7.5559 1.2820 17 6 1.2426 -8.3722 2.1070 18 6 2.5283 -8.9004 1.5144 19 1 2.6115 -9.9744 1.6797 20 7 3.6836 -8.2031 2.0948 21 6 2.4192 -8.5943 0.0033 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.5429 -4.9308 0.0011 28 1 -0.2892 -7.0552 1.4876 29 1 0.8668 -8.6360 3.0846 30 1 3.7639 -8.3961 3.0819 31 1 4.5340 -8.4456 1.6087 32 1 2.0061 -9.4448 -0.5390 33 1 3.3859 -8.3027 -0.4075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086092355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:15 Heat of formation + Delta-G solvation = -28.095239 kcal Electronic energy + Delta-G solvation = -15073.750553 eV Core-core repulsion = 12520.160091 eV Total energy + Delta-G solvation = -2553.590462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00696 -37.54209 -34.66407 -32.90005 -32.46036 -29.74131 -29.00418 -26.61183 -24.50440 -21.72475 -20.72844 -19.55659 -18.81134 -16.93611 -16.45943 -16.26108 -15.11419 -14.84321 -14.79542 -14.47073 -14.27725 -13.18335 -12.90659 -12.29805 -12.22531 -11.80027 -11.49921 -11.32224 -11.12089 -11.08217 -10.98942 -10.57584 -10.23676 -9.91608 -9.55945 -9.25906 -8.79952 -8.47310 -8.45083 -8.20875 -6.05381 -4.07643 2.12526 3.29199 3.31089 3.38380 3.43865 3.89453 4.45757 4.49500 4.57373 4.77423 5.04724 5.16687 5.31735 5.40787 5.47115 5.64145 5.77428 5.90981 6.16422 6.34171 6.45864 6.47901 6.80645 6.84512 7.11142 7.21986 7.51393 7.59118 7.69070 7.93972 8.20522 8.35150 8.88561 8.99414 9.56968 11.06386 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054575 B = 0.005065 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.936005 B = 5527.171949 C = 5694.485027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.125 3.875 11 N -0.725 5.725 12 C 0.521 3.479 13 O -0.531 6.531 14 C -0.087 4.087 15 H 0.097 0.903 16 C -0.137 4.137 17 C -0.156 4.156 18 C 0.113 3.887 19 H 0.036 0.964 20 N -0.826 5.826 21 C -0.109 4.109 22 H 0.261 0.739 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.394 0.606 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.335 0.665 31 H 0.344 0.656 32 H 0.074 0.926 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 -17.766 2.068 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.002 3.998 11 N -0.375 5.375 12 C 0.305 3.695 13 O -0.408 6.408 14 C -0.108 4.108 15 H 0.115 0.885 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.002 3.998 19 H 0.054 0.946 20 N -0.357 5.357 21 C -0.147 4.147 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.227 0.773 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.077 -16.961 1.834 17.093 hybrid contribution 0.083 0.086 0.347 0.367 sum 1.160 -16.875 2.181 17.054 Atomic orbital electron populations 1.69966 1.06090 1.26679 1.50707 1.24995 0.94875 0.99379 0.95074 0.86471 0.80204 0.83406 0.77574 1.19581 1.20963 1.20962 1.21115 0.93284 0.90448 1.50908 0.92236 1.19323 0.94254 0.91244 0.97715 1.21639 0.95911 0.81692 1.00523 1.46262 1.10229 1.06487 1.74554 1.20066 0.88085 0.84845 0.76486 1.90635 1.13667 1.87170 1.49285 1.21094 0.97022 0.94494 0.98208 0.88498 1.23072 0.99239 0.98114 0.95256 1.23188 0.95573 0.99545 0.99136 1.21062 0.90192 0.94412 0.94125 0.94598 1.58558 1.05488 1.64829 1.06797 1.22445 1.00864 0.96063 0.95294 0.92962 0.96051 0.96021 0.92880 0.92770 0.77277 0.85143 0.85863 0.85304 0.84210 0.90711 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.78 5.61 -4.04 -0.02 2.76 16 11 N -0.73 -13.35 5.52 -60.29 -0.33 -13.68 16 12 C 0.52 9.22 7.15 -10.98 -0.08 9.14 16 13 O -0.53 -11.10 15.04 5.56 0.08 -11.02 16 14 C -0.09 -1.14 3.30 -91.87 -0.30 -1.44 16 15 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.14 -1.64 10.05 -35.70 -0.36 -2.00 16 17 C -0.16 -1.77 10.41 -35.70 -0.37 -2.14 16 18 C 0.11 1.27 4.02 -67.85 -0.27 1.00 16 19 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 20 N -0.83 -10.16 8.85 -4.78 -0.04 -10.20 16 21 C -0.11 -1.29 6.19 -25.05 -0.16 -1.45 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.39 6.36 8.47 -40.82 -0.35 6.01 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.33 3.46 9.07 -39.29 -0.36 3.11 16 31 H 0.34 3.95 8.92 -39.29 -0.35 3.59 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.31 6.78 -51.93 -0.35 0.96 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -32.49 282.36 -7.19 -39.68 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.75 Total: 7.54 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.12 Total: -7.44 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.36 Total: -49.69 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.49 -7.19 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.580 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds