Wall clock time and date at job start Mon Mar 30 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09005 * 110.34394 * 57.71313 * 14 12 11 16 16 C 1.51098 * 110.38571 * 295.30440 * 14 12 11 17 17 C 1.30528 * 111.10445 * 257.62733 * 16 14 12 18 18 C 1.51103 * 111.10628 * 359.97438 * 17 16 14 19 19 H 1.08990 * 110.48531 * 224.70831 * 18 17 16 20 20 N 1.46898 * 110.38285 * 102.37350 * 18 17 16 21 21 C 1.54633 * 110.38763 * 180.02562 * 14 12 11 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 28 28 H 1.07997 * 124.45175 * 77.60498 * 16 14 12 29 29 H 1.08006 * 124.44472 * 180.02562 * 17 16 14 30 30 H 1.00898 * 110.99713 * 64.70705 * 20 18 17 31 31 H 1.00900 * 111.00076 * 188.65013 * 20 18 17 32 32 H 1.08997 * 111.03647 * 212.21310 * 21 14 12 33 33 H 1.09006 * 111.03733 * 336.14606 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.3996 -6.0979 0.0014 14 6 1.4333 -7.4031 0.0018 15 1 0.7714 -7.4586 -0.8625 16 6 0.6453 -7.5559 1.2820 17 6 1.2426 -8.3722 2.1070 18 6 2.5283 -8.9004 1.5144 19 1 2.6115 -9.9744 1.6797 20 7 3.6836 -8.2031 2.0948 21 6 2.4192 -8.5943 0.0033 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.5429 -4.9308 0.0011 28 1 -0.2892 -7.0552 1.4876 29 1 0.8668 -8.6360 3.0846 30 1 3.7639 -8.3961 3.0819 31 1 4.5340 -8.4456 1.6087 32 1 2.0061 -9.4448 -0.5390 33 1 3.3859 -8.3027 -0.4075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086092355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:15 Heat of formation + Delta-G solvation = -52.447035 kcal Electronic energy + Delta-G solvation = -15074.806526 eV Core-core repulsion = 12520.160091 eV Total energy + Delta-G solvation = -2554.646435 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21599 -38.76695 -36.44982 -34.78425 -33.56768 -31.53420 -30.05915 -27.83230 -26.32469 -23.25408 -22.37133 -20.71961 -19.84052 -18.55404 -18.03775 -17.42087 -16.49926 -16.42678 -16.20360 -15.85837 -15.71867 -14.72595 -14.44618 -14.29994 -13.20922 -13.17105 -12.93666 -12.76426 -12.52422 -12.47343 -12.33165 -12.13204 -11.99408 -11.61911 -11.44456 -11.02337 -10.60318 -9.96815 -9.87484 -9.37224 -8.23877 -6.34386 1.20289 1.41057 1.41760 1.55332 1.92315 2.35339 2.54659 3.10660 3.59459 3.64305 3.87957 4.04695 4.24976 4.35795 4.51432 4.56447 4.61215 4.72979 4.87503 4.89823 5.03145 5.22658 5.35887 5.47511 5.56979 5.59644 5.81102 5.93600 6.17861 6.37761 6.67972 6.77073 6.79654 7.35027 7.46627 8.88298 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054575 B = 0.005065 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.936005 B = 5527.171949 C = 5694.485027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.145 3.855 11 N -0.723 5.723 12 C 0.516 3.484 13 O -0.566 6.566 14 C -0.082 4.082 15 H 0.120 0.880 16 C -0.152 4.152 17 C -0.151 4.151 18 C 0.109 3.891 19 H 0.059 0.941 20 N -0.847 5.847 21 C -0.109 4.109 22 H 0.266 0.734 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.406 0.594 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.343 0.657 31 H 0.345 0.655 32 H 0.104 0.896 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -18.490 2.318 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.374 5.374 12 C 0.303 3.697 13 O -0.445 6.445 14 C -0.103 4.103 15 H 0.138 0.862 16 C -0.172 4.172 17 C -0.170 4.170 18 C -0.002 4.002 19 H 0.077 0.923 20 N -0.379 5.379 21 C -0.147 4.147 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.241 0.759 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.798 -17.713 2.087 17.853 hybrid contribution 0.166 0.262 0.281 0.419 sum 0.965 -17.451 2.368 17.637 Atomic orbital electron populations 1.70063 1.07546 1.27947 1.51111 1.25870 0.95797 1.03083 0.94361 0.85389 0.78919 0.78719 0.77971 1.19059 1.20068 1.20141 1.21502 0.93508 0.92032 1.51449 0.92517 1.19126 0.94216 0.91859 0.96195 1.21106 0.94900 0.82662 0.99196 1.46130 1.10766 1.05581 1.74909 1.20942 0.87973 0.85850 0.74897 1.90618 1.15464 1.87813 1.50595 1.21141 0.97313 0.91785 1.00089 0.86199 1.23192 1.00039 0.99108 0.94818 1.23480 0.95124 0.98721 0.99644 1.21167 0.89832 0.95614 0.93583 0.92340 1.58572 1.06035 1.65647 1.07641 1.22513 0.99583 0.96431 0.96183 0.92516 0.97334 0.97512 0.93946 0.94350 0.75852 0.83825 0.83960 0.84346 0.84053 0.87804 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.13 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.15 6.59 5.61 86.38 0.48 7.08 16 11 N -0.72 -26.50 5.52 -463.05 -2.56 -29.06 16 12 C 0.52 18.01 7.15 87.66 0.63 18.63 16 13 O -0.57 -23.81 15.04 -3.02 -0.05 -23.86 16 14 C -0.08 -2.01 3.30 -11.60 -0.04 -2.04 16 15 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 16 C -0.15 -3.28 10.05 26.26 0.26 -3.02 16 17 C -0.15 -3.03 10.41 26.26 0.27 -2.76 16 18 C 0.11 2.21 4.02 44.83 0.18 2.39 16 19 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 20 N -0.85 -19.93 8.85 -169.05 -1.50 -21.42 16 21 C -0.11 -2.38 6.19 31.68 0.20 -2.19 16 22 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.41 12.89 8.47 -92.71 -0.79 12.10 16 28 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.34 6.70 9.07 -89.70 -0.81 5.88 16 31 H 0.35 7.77 8.92 -89.69 -0.80 6.97 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.96 6.78 -2.38 -0.02 1.94 16 Total: -1.00 -69.17 282.36 -0.23 -69.40 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -1.27 Total: 24.17 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 2.83 Total: -10.77 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.77 Total: -105.27 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.17 -0.23 -69.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.950 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds