Wall clock time and date at job start Mon Mar 30 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99992 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.34696 * 302.29137 * 14 12 11 16 16 C 1.51098 * 110.38979 * 64.70174 * 14 12 11 17 17 C 1.30519 * 111.10584 * 135.24417 * 16 14 12 18 18 C 1.51104 * 111.10733 * 0.02562 * 17 16 14 19 19 H 1.08997 * 110.48542 * 224.70096 * 18 17 16 20 20 N 1.46894 * 110.38825 * 102.37236 * 18 17 16 21 21 C 1.54635 * 104.72112 * 343.56119 * 18 17 16 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 26 26 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 27 27 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 28 28 H 1.07999 * 124.44466 * 315.22792 * 16 14 12 29 29 H 1.08004 * 124.44776 * 179.97438 * 17 16 14 30 30 H 1.00897 * 111.00351 * 64.69878 * 20 18 17 31 31 H 1.00900 * 111.00016 * 188.65809 * 20 18 17 32 32 H 1.08996 * 111.03677 * 266.59909 * 21 18 17 33 33 H 1.08999 * 111.06955 * 142.68194 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.3994 -6.0981 -0.0007 14 6 1.4331 -7.4031 -0.0003 15 1 0.7710 -7.4585 0.8639 16 6 0.6453 -7.5562 -1.2805 17 6 0.7777 -8.7576 -1.7730 18 6 1.6754 -9.6065 -0.9031 19 1 2.3856 -10.1619 -1.5155 20 7 0.8742 -10.5285 -0.0871 21 6 2.4184 -8.5947 -0.0001 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.8719 -3.6044 -0.8906 26 1 2.8719 -3.6044 0.8894 27 1 0.5428 -4.9308 0.0000 28 1 0.0505 -6.7742 -1.7290 29 1 0.3067 -9.1003 -2.6825 30 1 0.3850 -11.1932 -0.6675 31 1 1.4485 -10.9989 0.5962 32 1 3.3759 -8.3103 -0.4365 33 1 2.5522 -8.9920 1.0061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086092356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:17 Heat of formation + Delta-G solvation = -56.164179 kcal Electronic energy + Delta-G solvation = -14811.804904 eV Core-core repulsion = 12256.997282 eV Total energy + Delta-G solvation = -2554.807622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25625 -39.01482 -36.58324 -34.83650 -33.61476 -31.61279 -30.13388 -27.90214 -26.33791 -23.22684 -22.40761 -20.88756 -19.93599 -18.57656 -18.22195 -17.21808 -16.72168 -16.51127 -16.16534 -16.03681 -15.73172 -14.86027 -14.49665 -14.31268 -13.32477 -13.24864 -12.93420 -12.87771 -12.69637 -12.54343 -12.38633 -12.23407 -12.05158 -11.66679 -11.49203 -10.99277 -10.60407 -10.10898 -10.01784 -9.50331 -8.24329 -6.35179 1.18892 1.41639 1.44015 1.52072 1.70176 2.29519 2.47564 3.10222 3.50229 3.56962 3.75853 4.02826 4.14409 4.35410 4.47666 4.48688 4.56247 4.64987 4.84233 4.88709 5.07297 5.11643 5.29643 5.45005 5.50232 5.57271 5.78102 5.88242 6.15737 6.25618 6.62875 6.65775 6.77750 7.27555 7.34159 8.87311 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.071035 B = 0.004525 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.076299 B = 6185.837936 C = 6406.827862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.716 5.716 12 C 0.512 3.488 13 O -0.590 6.590 14 C -0.075 4.075 15 H 0.122 0.878 16 C -0.155 4.155 17 C -0.147 4.147 18 C 0.113 3.887 19 H 0.054 0.946 20 N -0.842 5.842 21 C -0.105 4.105 22 H 0.266 0.734 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.410 0.590 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.352 0.648 31 H 0.351 0.649 32 H 0.071 0.929 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 -19.217 -1.850 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.300 3.700 13 O -0.471 6.471 14 C -0.096 4.096 15 H 0.140 0.860 16 C -0.174 4.174 17 C -0.165 4.165 18 C 0.002 3.998 19 H 0.071 0.929 20 N -0.375 5.375 21 C -0.143 4.143 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.246 0.754 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.252 -18.448 -1.606 18.519 hybrid contribution 0.421 0.483 -0.354 0.732 sum 0.169 -17.965 -1.960 18.072 Atomic orbital electron populations 1.70053 1.07546 1.28098 1.50853 1.25874 0.95799 1.03089 0.94324 0.85496 0.78316 0.78098 0.79130 1.20492 1.19342 1.19341 1.21449 0.93574 0.91998 1.51803 0.92364 1.19127 0.94199 0.91746 0.96348 1.21223 0.95080 0.82479 0.99654 1.46171 1.11069 1.05586 1.73775 1.21216 0.87807 0.86376 0.74596 1.90623 1.15974 1.88269 1.52234 1.21147 0.97298 0.90836 1.00292 0.86040 1.23139 1.00028 0.99135 0.95139 1.23408 0.99089 0.94861 0.99162 1.21038 0.92809 0.93448 0.92497 0.92854 1.58649 1.33743 1.25112 1.20008 1.22443 0.97304 0.93222 1.01320 0.92498 0.97344 0.97274 0.93703 0.93684 0.75421 0.84598 0.83448 0.83385 0.83469 0.91079 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 2 C 0.01 0.45 5.46 84.66 0.46 0.92 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.16 5.61 86.38 0.48 6.65 16 11 N -0.72 -25.64 5.53 -463.06 -2.56 -28.20 16 12 C 0.51 17.76 7.16 87.65 0.63 18.39 16 13 O -0.59 -25.03 15.48 -3.04 -0.05 -25.08 16 14 C -0.07 -1.90 3.29 -11.61 -0.04 -1.94 16 15 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 16 C -0.16 -3.44 10.05 26.27 0.26 -3.18 16 17 C -0.15 -2.74 10.41 26.27 0.27 -2.47 16 18 C 0.11 1.99 4.03 44.86 0.18 2.17 16 19 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 20 N -0.84 -11.76 9.28 -168.95 -1.57 -13.32 16 21 C -0.10 -2.40 6.17 31.70 0.20 -2.21 16 22 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 23 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 27 H 0.41 12.67 8.47 -92.71 -0.79 11.89 16 28 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.35 3.64 9.07 -89.70 -0.81 2.83 16 31 H 0.35 3.93 8.93 -89.69 -0.80 3.13 16 32 H 0.07 1.96 6.99 -2.39 -0.02 1.95 16 33 H 0.09 1.80 7.98 -2.39 -0.02 1.78 16 Total: -1.00 -67.56 283.27 -0.30 -67.86 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -1.27 Total: 18.42 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 2.83 Total: -11.21 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -3.84 Total: -95.86 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.56 -0.30 -67.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086092356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.694 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds