Wall clock time and date at job start Mon Mar 30 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48499 * 109.47351 * 270.00308 * 3 2 1 5 5 H 1.48500 * 109.47007 * 30.00129 * 3 2 1 6 6 H 1.48503 * 109.47355 * 150.00087 * 3 2 1 7 7 C 1.37873 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00370 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99840 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00269 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99533 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00196 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 11 16 16 C 1.54633 * 111.03552 * 267.02344 * 15 14 13 17 17 C 1.51097 * 104.72723 * 217.33737 * 16 15 14 18 18 C 1.30530 * 111.10284 * 16.43212 * 17 16 15 19 19 C 1.51098 * 111.10271 * 0.02562 * 18 17 16 20 20 H 0.97001 * 119.99802 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47008 * 60.00088 * 9 7 2 22 22 H 1.08998 * 109.47003 * 299.99928 * 9 7 2 23 23 H 0.97009 * 120.00102 * 0.02562 * 10 9 7 24 24 H 1.09001 * 109.47558 * 60.00201 * 13 11 10 25 25 H 1.08998 * 109.47216 * 299.99863 * 13 11 10 26 26 H 1.00901 * 110.99869 * 56.04737 * 14 13 11 27 27 H 1.09001 * 110.91558 * 31.03160 * 15 14 13 28 28 H 1.09006 * 110.38792 * 336.14505 * 16 15 14 29 29 H 1.09002 * 110.39184 * 98.52280 * 16 15 14 30 30 H 1.08005 * 124.45506 * 196.46052 * 17 16 15 31 31 H 1.08000 * 124.44615 * 180.02562 * 18 17 16 32 32 H 1.09005 * 110.38574 * 224.74698 * 19 18 17 33 33 H 1.09002 * 110.47998 * 102.42503 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3250 -2.8215 -0.0020 12 8 6.1131 -1.8997 -0.0034 13 6 5.8273 -4.2423 -0.0024 14 7 7.2964 -4.2423 -0.0029 15 6 7.8228 -5.6137 -0.0040 16 6 8.0921 -6.1060 1.4370 17 6 9.3536 -6.9310 1.3316 18 6 9.9811 -6.6893 0.2128 19 6 9.2429 -5.6624 -0.6141 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6804 0.8889 22 1 3.8746 -0.6800 -0.8911 23 1 3.3696 -3.3126 -0.0010 24 1 5.4634 -4.7562 -0.8922 25 1 5.4647 -4.7562 0.8878 26 1 7.6582 -3.7163 0.7785 27 1 7.1476 -6.2893 -0.5291 28 1 8.2473 -5.2587 2.1050 29 1 7.2642 -6.7215 1.7890 30 1 9.6916 -7.6293 2.0829 31 1 10.9063 -7.1614 -0.0830 32 1 9.1972 -5.9763 -1.6570 33 1 9.7256 -4.6885 -0.5324 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132919412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:04 Heat of formation + Delta-G solvation = -20.694278 kcal Electronic energy + Delta-G solvation = -14693.249938 eV Core-core repulsion = 12139.980406 eV Total energy + Delta-G solvation = -2553.269532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42496 -38.53971 -34.59307 -34.05921 -32.34742 -29.15537 -28.32645 -27.60493 -24.96185 -21.89348 -20.80680 -19.85961 -18.95210 -17.38621 -16.47663 -16.01671 -15.73538 -15.27675 -14.86285 -14.30437 -13.70332 -13.10288 -12.85601 -12.75097 -12.45646 -12.33354 -12.27966 -11.82677 -11.61144 -11.47830 -11.33202 -11.01480 -10.75736 -9.97108 -9.49812 -9.21008 -9.08863 -8.77907 -8.41528 -8.12956 -6.21725 -4.24026 2.05238 3.23427 3.28099 3.33783 3.42457 3.69433 4.29520 4.33906 4.49348 4.60295 4.92067 5.08975 5.13587 5.26382 5.35697 5.46234 5.49221 5.53964 5.60513 5.73497 5.83150 5.89746 6.31324 6.67293 6.77865 6.95267 7.07585 7.23755 7.32628 7.40044 8.14130 8.51965 8.75181 8.94876 9.38577 10.90231 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.073321 B = 0.004446 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.793168 B = 6296.715181 C = 6487.858621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.547 6.547 13 C 0.040 3.960 14 N -0.663 5.663 15 C 0.084 3.916 16 C -0.133 4.133 17 C -0.169 4.169 18 C -0.164 4.164 19 C -0.093 4.093 20 H 0.268 0.732 21 H 0.024 0.976 22 H 0.021 0.979 23 H 0.396 0.604 24 H 0.099 0.901 25 H 0.057 0.943 26 H 0.352 0.648 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 -13.560 1.474 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.425 6.425 13 C -0.092 4.092 14 N -0.295 5.295 15 C -0.027 4.027 16 C -0.172 4.172 17 C -0.188 4.188 18 C -0.182 4.182 19 C -0.130 4.130 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.229 0.771 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.173 0.827 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.591 -12.644 0.786 20.089 hybrid contribution -0.202 0.159 0.961 0.995 sum 15.388 -12.485 1.747 19.893 Atomic orbital electron populations 1.69884 1.06222 1.27435 1.49477 1.24803 0.94800 0.99213 0.93854 0.86802 0.80534 0.83175 0.79086 1.19813 1.20912 1.18525 1.21100 0.88549 0.95221 1.53296 0.90266 1.19481 0.95188 0.78696 0.96762 1.46169 1.05669 1.11031 1.72791 1.20424 0.83158 0.90676 0.77506 1.90656 1.55474 1.46068 1.50273 1.21865 0.89355 0.95501 1.02525 1.60139 1.05817 1.12089 1.51411 1.22487 0.96355 0.89507 0.94348 1.22183 0.96729 0.99612 0.98635 1.23159 0.97312 0.99999 0.98287 1.23339 0.99701 0.98481 0.96664 1.21368 0.93949 0.98640 0.99069 0.92260 0.95781 0.96127 0.77063 0.88325 0.92541 0.82702 0.89295 0.90496 0.91197 0.86168 0.85947 0.90916 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 10 N -0.71 -14.23 5.55 -61.47 -0.34 -14.57 16 11 C 0.50 9.41 7.87 -10.99 -0.09 9.32 16 12 O -0.55 -12.49 16.20 5.56 0.09 -12.40 16 13 C 0.04 0.54 6.03 -4.97 -0.03 0.51 16 14 N -0.66 -8.72 5.99 -106.17 -0.64 -9.35 16 15 C 0.08 0.87 3.50 -65.99 -0.23 0.64 16 16 C -0.13 -1.24 6.51 -26.83 -0.17 -1.42 16 17 C -0.17 -1.48 10.78 -35.70 -0.38 -1.86 16 18 C -0.16 -1.42 10.77 -35.70 -0.38 -1.81 16 19 C -0.09 -0.91 6.55 -26.82 -0.18 -1.09 16 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 22 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 23 H 0.40 6.93 8.32 -40.82 -0.34 6.59 16 24 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.35 4.83 7.78 -39.29 -0.31 4.52 16 27 H 0.09 0.87 7.83 -51.93 -0.41 0.46 16 28 H 0.08 0.75 7.56 -51.93 -0.39 0.36 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 280.83 15.07 4.23 4.23 Total: -1.00 -31.79 280.83 -7.22 -39.00 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.74 Total: 5.46 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.93 Total: -3.47 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.20 Total: -49.72 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.79 -7.22 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132919412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.311 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds