Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86806 * 119.99732 * 2 1 4 4 H 1.48496 * 109.46994 * 273.80630 * 3 2 1 5 5 H 1.48496 * 109.47095 * 33.81005 * 3 2 1 6 6 H 1.48507 * 109.46878 * 153.80711 * 3 2 1 7 7 C 1.38953 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99465 * 36.69207 * 7 2 1 9 9 N 1.37089 * 120.00408 * 216.69550 * 7 2 1 10 10 C 1.33714 * 118.56297 * 39.93120 * 9 7 2 11 11 O 1.21290 * 117.97914 * 355.77101 * 10 9 7 12 12 C 1.50058 * 124.04768 * 175.74768 * 10 9 7 13 13 C 1.55020 * 110.58290 * 16.07558 * 12 10 9 14 14 C 1.52856 * 107.18456 * 313.30965 * 13 12 10 15 15 H 1.09007 * 109.32058 * 308.96800 * 14 13 12 16 16 C 1.52709 * 111.33804 * 187.93832 * 14 13 12 17 17 N 1.47106 * 108.77304 * 180.13391 * 16 14 13 18 18 C 1.46698 * 111.90520 * 60.94114 * 17 16 14 19 19 C 1.53292 * 110.16541 * 299.72791 * 18 17 16 20 20 C 1.45315 * 118.56601 * 219.91143 * 9 7 2 21 21 H 1.09004 * 108.80053 * 84.77611 * 20 9 7 22 22 H 0.97003 * 120.00123 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.24716 * 135.99787 * 12 10 9 24 24 H 1.08995 * 109.24235 * 255.44081 * 12 10 9 25 25 H 1.09005 * 109.65392 * 194.25097 * 13 12 10 26 26 H 1.09003 * 110.73233 * 72.97548 * 13 12 10 27 27 H 1.08999 * 109.58630 * 60.34984 * 16 14 13 28 28 H 1.09000 * 109.70334 * 299.98960 * 16 14 13 29 29 H 1.00901 * 111.00231 * 296.32630 * 17 16 14 30 30 H 1.08994 * 109.35684 * 59.94389 * 18 17 16 31 31 H 1.09000 * 109.35328 * 179.51535 * 18 17 16 32 32 H 1.08994 * 109.62141 * 178.01827 * 19 18 17 33 33 H 1.09008 * 109.61691 * 298.56253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4150 2.0929 -1.3970 5 1 1.4881 2.6281 0.7790 6 1 3.5836 1.4184 0.6180 7 6 2.0090 -1.2033 0.0005 8 1 1.6295 -2.0462 -0.5580 9 7 3.1761 -1.3206 0.7100 10 6 3.2530 -0.7443 1.9141 11 8 2.3107 -0.0780 2.2873 12 6 4.4330 -0.8712 2.8325 13 6 5.6705 -1.3962 2.0604 14 6 5.2069 -2.5850 1.2188 15 1 4.6645 -3.2862 1.8531 16 6 6.3890 -3.2991 0.5671 17 7 5.8806 -4.4271 -0.2286 18 6 4.9799 -3.9810 -1.2971 19 6 3.7713 -3.2516 -0.6994 20 6 4.2755 -2.0662 0.1208 21 1 4.8401 -1.4016 -0.5331 22 1 -0.4850 0.8401 -0.0004 23 1 4.6669 0.1063 3.2541 24 1 4.1872 -1.5611 3.6397 25 1 6.4333 -1.7213 2.7680 26 1 6.0770 -0.6213 1.4104 27 1 7.0623 -3.6709 1.3395 28 1 6.9246 -2.6062 -0.0818 29 1 5.4312 -5.1118 0.3607 30 1 5.5164 -3.3055 -1.9633 31 1 4.6356 -4.8461 -1.8640 32 1 3.1263 -2.8936 -1.5018 33 1 3.2149 -3.9324 -0.0551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159995378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -22.619296 kcal Electronic energy + Delta-G solvation = -16591.260900 eV Core-core repulsion = 14037.907893 eV Total energy + Delta-G solvation = -2553.353007 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09867 -37.63327 -34.26789 -33.91291 -31.86157 -29.81985 -29.06460 -25.19499 -23.60884 -22.90922 -21.27833 -20.38904 -18.86518 -16.75096 -16.15690 -15.60021 -14.73861 -14.61575 -14.41857 -13.91517 -13.41486 -13.21492 -12.83551 -12.68387 -12.45745 -12.09033 -11.58742 -11.41793 -11.35039 -10.95479 -10.81332 -10.68056 -10.39003 -10.23334 -9.85800 -9.79355 -8.72840 -8.22702 -8.08836 -7.48449 -6.26272 -3.79633 3.30745 3.52402 3.53076 4.00747 4.33851 4.56510 4.63739 4.89772 4.95851 5.08766 5.22706 5.37445 5.45625 5.52187 5.63437 5.73803 5.86983 5.90584 5.95884 6.03253 6.18904 6.21936 6.23313 6.38260 6.42838 6.63247 6.78557 7.14225 7.45755 7.87577 8.10885 8.91864 9.09351 9.55766 10.01855 10.80797 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.012149 C = 0.010192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.521722 B = 2304.102978 C = 2746.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.125 3.875 3 Si 0.900 3.100 4 H -0.299 1.299 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.445 5.445 10 C 0.454 3.546 11 O -0.567 6.567 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.140 4.140 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.691 5.691 18 C 0.059 3.941 19 C -0.153 4.153 20 C 0.148 3.852 21 H 0.052 0.948 22 H 0.271 0.729 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.339 0.661 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -6.319 0.295 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.088 4.088 3 Si 0.729 3.271 4 H -0.227 1.227 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.513 4.513 8 H 0.111 0.889 9 N -0.166 5.166 10 C 0.244 3.756 11 O -0.450 6.450 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.161 4.161 15 H 0.092 0.908 16 C -0.060 4.060 17 N -0.318 5.318 18 C -0.071 4.071 19 C -0.192 4.192 20 C 0.043 3.957 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.530 -5.952 0.052 13.872 hybrid contribution -0.465 1.187 0.571 1.397 sum 12.065 -4.765 0.623 12.987 Atomic orbital electron populations 1.69999 1.07380 1.28261 1.40850 1.25095 0.94127 0.98914 0.90675 0.86432 0.81571 0.83774 0.75324 1.22716 1.21464 1.20222 1.18558 0.98872 0.98999 1.34916 0.88900 1.43003 1.12471 1.47482 1.13671 1.19767 0.88751 0.85005 0.82091 1.90477 1.38404 1.42125 1.74017 1.21865 0.93870 1.02573 0.98517 1.21850 0.97080 0.97425 0.98531 1.22211 0.97977 0.98115 0.97780 0.90758 1.21973 0.95440 0.92315 0.96309 1.60538 1.41341 1.14200 1.15767 1.22052 0.91911 0.99248 0.93931 1.22421 0.98532 0.97211 1.01076 1.20694 0.88420 0.93173 0.93418 0.93022 0.91941 0.90164 0.89785 0.91447 0.91523 0.90700 0.90826 0.84397 0.91071 0.90837 0.89544 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.76 13.96 55.50 0.77 -24.99 16 2 C 0.12 3.74 4.13 -17.47 -0.07 3.66 16 3 Si 0.90 24.50 26.14 -169.99 -4.44 20.05 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 5 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.28 -7.48 6.33 56.52 0.36 -7.12 16 7 C -0.39 -11.04 8.66 -14.94 -0.13 -11.17 16 8 H 0.09 2.68 6.60 -52.49 -0.35 2.34 16 9 N -0.45 -10.89 2.48 -109.21 -0.27 -11.16 16 10 C 0.45 11.37 5.75 -11.77 -0.07 11.30 16 11 O -0.57 -16.84 13.07 5.55 0.07 -16.77 16 12 C -0.13 -2.37 6.02 -27.13 -0.16 -2.53 16 13 C -0.11 -1.63 5.59 -25.74 -0.14 -1.77 16 14 C -0.14 -2.09 2.03 -90.82 -0.18 -2.28 16 15 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 16 C 0.07 0.84 6.00 -3.86 -0.02 0.82 16 17 N -0.69 -8.41 6.82 -113.78 -0.78 -9.18 16 18 C 0.06 0.77 6.55 -3.78 -0.02 0.74 16 19 C -0.15 -2.57 4.73 -26.73 -0.13 -2.69 16 20 C 0.15 2.78 2.44 -68.69 -0.17 2.62 16 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.34 3.83 8.88 -39.29 -0.35 3.48 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.61 6.90 -51.93 -0.36 1.25 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -33.56 255.06 -6.78 -40.34 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.88 Total: -0.84 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.10 Total: -1.29 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.27 Total: -45.33 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.07 Total: -16.77 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.44 Total: 20.05 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.56 -6.78 -40.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159995378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.722 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds