Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86806 * 119.99732 * 2 1 4 4 H 1.48496 * 109.46994 * 273.80630 * 3 2 1 5 5 H 1.48496 * 109.47095 * 33.81005 * 3 2 1 6 6 H 1.48507 * 109.46878 * 153.80711 * 3 2 1 7 7 C 1.38953 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99465 * 36.69207 * 7 2 1 9 9 N 1.37089 * 120.00408 * 216.69550 * 7 2 1 10 10 C 1.33714 * 118.56297 * 39.93120 * 9 7 2 11 11 O 1.21290 * 117.97914 * 355.77101 * 10 9 7 12 12 C 1.50058 * 124.04768 * 175.74768 * 10 9 7 13 13 C 1.55020 * 110.58290 * 16.07558 * 12 10 9 14 14 C 1.52856 * 107.18456 * 313.30965 * 13 12 10 15 15 H 1.09007 * 109.32058 * 308.96800 * 14 13 12 16 16 C 1.52709 * 111.33804 * 187.93832 * 14 13 12 17 17 N 1.47106 * 108.77304 * 180.13391 * 16 14 13 18 18 C 1.46698 * 111.90520 * 60.94114 * 17 16 14 19 19 C 1.53292 * 110.16541 * 299.72791 * 18 17 16 20 20 C 1.45315 * 118.56601 * 219.91143 * 9 7 2 21 21 H 1.09004 * 108.80053 * 84.77611 * 20 9 7 22 22 H 0.97003 * 120.00123 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.24716 * 135.99787 * 12 10 9 24 24 H 1.08995 * 109.24235 * 255.44081 * 12 10 9 25 25 H 1.09005 * 109.65392 * 194.25097 * 13 12 10 26 26 H 1.09003 * 110.73233 * 72.97548 * 13 12 10 27 27 H 1.08999 * 109.58630 * 60.34984 * 16 14 13 28 28 H 1.09000 * 109.70334 * 299.98960 * 16 14 13 29 29 H 1.00901 * 111.00231 * 296.32630 * 17 16 14 30 30 H 1.08994 * 109.35684 * 59.94389 * 18 17 16 31 31 H 1.09000 * 109.35328 * 179.51535 * 18 17 16 32 32 H 1.08994 * 109.62141 * 178.01827 * 19 18 17 33 33 H 1.09008 * 109.61691 * 298.56253 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4150 2.0929 -1.3970 5 1 1.4881 2.6281 0.7790 6 1 3.5836 1.4184 0.6180 7 6 2.0090 -1.2033 0.0005 8 1 1.6295 -2.0462 -0.5580 9 7 3.1761 -1.3206 0.7100 10 6 3.2530 -0.7443 1.9141 11 8 2.3107 -0.0780 2.2873 12 6 4.4330 -0.8712 2.8325 13 6 5.6705 -1.3962 2.0604 14 6 5.2069 -2.5850 1.2188 15 1 4.6645 -3.2862 1.8531 16 6 6.3890 -3.2991 0.5671 17 7 5.8806 -4.4271 -0.2286 18 6 4.9799 -3.9810 -1.2971 19 6 3.7713 -3.2516 -0.6994 20 6 4.2755 -2.0662 0.1208 21 1 4.8401 -1.4016 -0.5331 22 1 -0.4850 0.8401 -0.0004 23 1 4.6669 0.1063 3.2541 24 1 4.1872 -1.5611 3.6397 25 1 6.4333 -1.7213 2.7680 26 1 6.0770 -0.6213 1.4104 27 1 7.0623 -3.6709 1.3395 28 1 6.9246 -2.6062 -0.0818 29 1 5.4312 -5.1118 0.3607 30 1 5.5164 -3.3055 -1.9633 31 1 4.6356 -4.8461 -1.8640 32 1 3.1263 -2.8936 -1.5018 33 1 3.2149 -3.9324 -0.0551 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159995378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -48.671376 kcal Electronic energy + Delta-G solvation = -16592.390603 eV Core-core repulsion = 14037.907893 eV Total energy + Delta-G solvation = -2554.482710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68642 -39.20588 -36.03614 -35.41357 -33.87035 -31.22203 -30.44345 -27.13946 -24.94636 -24.23830 -22.81482 -21.67626 -20.57230 -18.65122 -17.75571 -17.24669 -16.36937 -16.19856 -15.85286 -15.52014 -14.92328 -14.73224 -14.58583 -14.32372 -13.92781 -13.75889 -13.06032 -12.96154 -12.76185 -12.58077 -12.35126 -12.24058 -11.97586 -11.77122 -11.66136 -11.18463 -10.86169 -10.08070 -9.58948 -9.27452 -8.54102 -6.04468 1.16220 1.27574 1.33049 2.01168 2.45247 2.64075 3.09686 3.47440 3.66754 3.72895 3.86063 4.00906 4.18811 4.30609 4.39802 4.54044 4.64467 4.66319 4.75714 4.88356 4.95101 5.02986 5.08919 5.09040 5.21759 5.29462 5.45434 5.68305 5.92538 6.11840 6.53754 6.83227 6.98593 7.45922 8.02494 8.56803 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.033305 B = 0.012149 C = 0.010192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.521722 B = 2304.102978 C = 2746.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.079 3.921 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.389 4.389 8 H 0.073 0.927 9 N -0.455 5.455 10 C 0.438 3.562 11 O -0.624 6.624 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.130 4.130 15 H 0.070 0.930 16 C 0.077 3.923 17 N -0.685 5.685 18 C 0.071 3.929 19 C -0.146 4.146 20 C 0.135 3.865 21 H 0.051 0.949 22 H 0.272 0.728 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.346 0.654 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.263 -7.346 0.794 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.514 4.514 8 H 0.091 0.909 9 N -0.175 5.175 10 C 0.230 3.770 11 O -0.512 6.512 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.151 4.151 15 H 0.088 0.912 16 C -0.053 4.053 17 N -0.312 5.312 18 C -0.059 4.059 19 C -0.186 4.186 20 C 0.031 3.969 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.122 0.878 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.164 0.836 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.212 -7.013 0.523 17.671 hybrid contribution -1.622 1.414 0.442 2.196 sum 14.590 -5.599 0.965 15.657 Atomic orbital electron populations 1.70069 1.08564 1.28785 1.43837 1.25743 0.94637 1.01659 0.90960 0.85696 0.80314 0.80646 0.75863 1.20733 1.22980 1.19885 1.18580 1.00607 0.98072 1.34115 0.90911 1.43259 1.12807 1.47762 1.13676 1.21076 0.90044 0.83354 0.82539 1.90442 1.41034 1.44469 1.75209 1.21877 0.92745 1.03979 0.97722 1.21887 0.96070 0.97019 0.99008 1.22214 0.98112 0.98339 0.96397 0.91160 1.22045 0.94277 0.91994 0.96980 1.60563 1.40574 1.14289 1.15796 1.21966 0.90258 0.99438 0.94248 1.22371 0.99852 0.96618 0.99785 1.21067 0.87481 0.93167 0.95161 0.93095 0.91904 0.89424 0.87842 0.86674 0.91447 0.87487 0.90250 0.83554 0.90552 0.89259 0.92446 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.59 13.96 21.66 0.30 -56.29 16 2 C 0.08 4.85 4.13 84.93 0.35 5.20 16 3 Si 0.95 51.46 26.14 68.60 1.79 53.25 16 4 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.30 -17.00 7.11 99.48 0.71 -16.30 16 6 H -0.27 -14.52 6.33 99.48 0.63 -13.89 16 7 C -0.39 -22.71 8.66 84.04 0.73 -21.98 16 8 H 0.07 4.43 6.60 -2.91 -0.02 4.41 16 9 N -0.45 -22.30 2.48 -618.42 -1.53 -23.83 16 10 C 0.44 21.75 5.75 87.62 0.50 22.26 16 11 O -0.62 -37.72 13.07 -3.06 -0.04 -37.76 16 12 C -0.12 -4.21 6.02 30.34 0.18 -4.03 16 13 C -0.10 -2.51 5.59 31.24 0.17 -2.34 16 14 C -0.13 -3.39 2.03 -10.92 -0.02 -3.42 16 15 H 0.07 1.93 8.08 -2.38 -0.02 1.91 16 16 C 0.08 1.46 6.00 86.17 0.52 1.98 16 17 N -0.68 -13.82 6.82 -513.88 -3.51 -17.32 16 18 C 0.07 1.68 6.55 86.44 0.57 2.25 16 19 C -0.15 -4.85 4.73 30.60 0.14 -4.70 16 20 C 0.13 4.89 2.44 45.13 0.11 5.00 16 21 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 22 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 23 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.11 1.86 8.14 -2.38 -0.02 1.85 16 26 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.35 6.42 8.88 -89.69 -0.80 5.62 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 2.20 6.90 -2.39 -0.02 2.19 16 33 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -76.36 255.06 0.50 -75.86 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.23 Total: 5.87 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 3.26 Total: 0.21 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.73 Total: -97.43 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.04 Total: -37.76 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.79 Total: 53.25 kcal Total: -76.36 0.50 -75.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159995378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.190 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds