Wall clock time and date at job start Mon Mar 30 2020 03:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48500 * 109.47259 * 270.00113 * 3 2 1 5 5 H 1.48497 * 109.46836 * 30.00517 * 3 2 1 6 6 H 1.48499 * 109.46667 * 150.00238 * 3 2 1 7 7 C 1.37872 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00335 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.72876 * 64.98649 * 9 7 2 11 11 C 1.51398 * 109.59532 * 304.58491 * 9 7 2 12 12 O 1.21283 * 119.87725 * 131.59291 * 11 9 7 13 13 N 1.33611 * 120.23826 * 311.58760 * 11 9 7 14 14 C 1.47248 * 119.84416 * 359.47441 * 13 11 9 15 15 C 1.53108 * 108.39803 * 290.01271 * 14 13 11 16 16 C 1.51689 * 110.75882 * 85.59617 * 15 14 13 17 17 N 1.45756 * 113.93610 * 293.22541 * 16 15 14 18 18 C 1.46901 * 110.99865 * 192.72191 * 17 16 15 19 19 C 1.52999 * 117.49586 * 124.66870 * 18 17 16 20 20 C 1.53001 * 117.49626 * 56.04464 * 18 17 16 21 21 H 0.97001 * 119.99828 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.07533 * 179.45144 * 13 11 9 23 23 H 1.08999 * 109.67354 * 170.29209 * 14 13 11 24 24 H 1.08998 * 109.71125 * 49.76042 * 14 13 11 25 25 H 1.08996 * 109.22264 * 325.26493 * 15 14 13 26 26 H 1.09004 * 109.18341 * 205.89978 * 15 14 13 27 27 H 1.08998 * 108.59102 * 172.06850 * 16 15 14 28 28 H 1.08998 * 108.58812 * 54.37404 * 16 15 14 29 29 H 1.09000 * 115.54675 * 270.37775 * 18 17 16 30 30 H 1.09004 * 117.50222 * 359.97438 * 19 18 17 31 31 H 1.09001 * 117.49745 * 145.02672 * 19 18 17 32 32 H 1.08994 * 117.49773 * 214.97439 * 20 18 17 33 33 H 1.08992 * 117.49993 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8792 -0.7609 0.9302 11 6 4.0198 -0.3837 -1.1735 12 8 4.8801 0.4539 -1.0020 13 7 3.5242 -0.5880 -2.3973 14 6 2.4881 -1.6132 -2.6065 15 6 3.1295 -2.9919 -2.4279 16 6 3.1389 -3.3951 -0.9656 17 7 4.0044 -2.5715 -0.1306 18 6 4.2037 -3.1867 1.1884 19 6 5.6438 -3.4356 1.6414 20 6 4.7580 -4.6122 1.2265 21 1 -0.4850 0.8401 0.0004 22 1 3.8458 -0.0619 -3.1460 23 1 2.0827 -1.5248 -3.6144 24 1 1.6891 -1.4827 -1.8767 25 1 4.1542 -2.9617 -2.7984 26 1 2.5630 -3.7272 -2.9992 27 1 3.4695 -4.4312 -0.8930 28 1 2.1212 -3.3306 -0.5809 29 1 3.4766 -2.9087 1.9514 30 1 6.4433 -3.1434 0.9605 31 1 5.8644 -3.3215 2.7027 32 1 4.3959 -5.2720 2.0149 33 1 4.9751 -5.0935 0.2730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219378609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:01 Heat of formation + Delta-G solvation = -5.294887 kcal Electronic energy + Delta-G solvation = -16688.372078 eV Core-core repulsion = 14135.770314 eV Total energy + Delta-G solvation = -2552.601764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37528 -38.98588 -37.04973 -35.06901 -34.29118 -32.21084 -29.26785 -26.32987 -25.40835 -23.12242 -22.33493 -20.93985 -20.80523 -19.41730 -18.05142 -17.40614 -17.01071 -16.63782 -15.61098 -15.51179 -15.19973 -14.51980 -14.41058 -14.20957 -13.84605 -13.74719 -13.03944 -12.93900 -12.38219 -12.30724 -12.17215 -11.84472 -11.64506 -11.51890 -11.33538 -10.94428 -10.85481 -10.62499 -9.77429 -8.91592 -8.46646 -6.42476 1.15772 1.22756 1.48069 1.76082 2.19532 2.64280 2.88105 3.00610 3.19127 4.11200 4.17206 4.20120 4.22927 4.27390 4.42991 4.65455 4.70491 4.83929 4.88309 5.02324 5.08075 5.14250 5.15049 5.17019 5.36372 5.39152 5.67447 5.97145 6.14536 6.21993 6.42860 6.53249 6.59471 7.15299 7.48792 8.63660 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.013189 C = 0.012571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.446052 B = 2122.443385 C = 2226.827142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.062 3.938 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.176 3.824 10 H 0.039 0.961 11 C 0.520 3.480 12 O -0.619 6.619 13 N -0.703 5.703 14 C 0.076 3.924 15 C -0.117 4.117 16 C 0.053 3.947 17 N -0.507 5.507 18 C -0.011 4.011 19 C -0.168 4.168 20 C -0.147 4.147 21 H 0.271 0.729 22 H 0.392 0.608 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -9.314 -3.068 10.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.141 4.141 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.110 0.890 9 C 0.065 3.935 10 H 0.057 0.943 11 C 0.308 3.692 12 O -0.503 6.503 13 N -0.352 5.352 14 C -0.046 4.046 15 C -0.156 4.156 16 C -0.074 4.074 17 N -0.231 5.231 18 C -0.120 4.120 19 C -0.206 4.206 20 C -0.184 4.184 21 H 0.080 0.920 22 H 0.228 0.772 23 H 0.112 0.888 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.426 -8.890 -3.074 10.859 hybrid contribution -0.456 1.702 0.159 1.770 sum 4.969 -7.187 -2.915 9.211 Atomic orbital electron populations 1.69895 1.06552 1.27934 1.50123 1.25118 0.94866 0.99816 0.94258 0.86759 0.79352 0.83317 0.79269 1.20477 1.21371 1.19334 1.21403 0.89421 0.94683 1.50819 0.89033 1.19740 0.94198 0.88057 0.91523 0.94274 1.21394 0.78982 0.82445 0.86372 1.90559 1.34854 1.38922 1.85930 1.45796 1.41341 1.39629 1.08456 1.22602 0.91735 0.86469 1.03788 1.21674 1.01299 0.96907 0.95706 1.21656 0.96245 0.96140 0.93352 1.60990 1.49144 1.00603 1.12386 1.22367 0.97748 1.00101 0.91737 1.23094 0.93189 1.02602 1.01668 1.23103 1.02123 0.89538 1.03682 0.91964 0.77229 0.88840 0.87454 0.92059 0.87810 0.90076 0.94254 0.90601 0.89508 0.87645 0.86801 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.80 13.96 21.45 0.30 -50.50 16 2 C 0.06 3.37 5.00 84.65 0.42 3.79 16 3 Si 0.88 46.34 24.51 68.60 1.68 48.02 16 4 H -0.28 -14.71 7.11 99.48 0.71 -14.01 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.27 -15.01 5.99 99.48 0.60 -14.41 16 7 C -0.53 -26.47 5.48 25.60 0.14 -26.33 16 8 H 0.09 4.77 5.41 -2.91 -0.02 4.76 16 9 C 0.18 8.43 1.77 43.65 0.08 8.51 16 10 H 0.04 2.09 7.19 -2.39 -0.02 2.07 16 11 C 0.52 25.33 4.01 88.06 0.35 25.68 16 12 O -0.62 -34.08 16.00 -3.04 -0.05 -34.13 16 13 N -0.70 -28.59 5.31 -462.00 -2.45 -31.04 16 14 C 0.08 2.70 6.42 86.27 0.55 3.25 16 15 C -0.12 -3.52 5.86 30.20 0.18 -3.35 16 16 C 0.05 1.80 4.77 86.09 0.41 2.21 16 17 N -0.51 -19.99 4.47 -859.04 -3.84 -23.83 16 18 C -0.01 -0.37 5.06 44.91 0.23 -0.15 16 19 C -0.17 -4.85 10.46 30.60 0.32 -4.53 16 20 C -0.15 -3.72 9.58 30.60 0.29 -3.43 16 21 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 22 H 0.39 14.29 8.92 -92.71 -0.83 13.46 16 23 H 0.09 2.63 8.14 -2.39 -0.02 2.62 16 24 H 0.11 4.67 4.18 -2.39 -0.01 4.66 16 25 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.30 6.37 -2.39 -0.02 2.28 16 28 H 0.04 1.52 5.19 -2.39 -0.01 1.51 16 29 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 30 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.10 2.44 7.25 -2.39 -0.02 2.43 16 Total: -1.00 -64.77 252.53 -1.20 -65.97 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.19 Total: 19.84 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 2.98 Total: 5.67 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -6.00 Total: -105.37 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.05 Total: -34.13 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.68 Total: 48.02 kcal Total: -64.77 -1.20 -65.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219378609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.675 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds