Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99559 * 2 1 4 4 H 1.48499 * 109.46811 * 239.99520 * 3 2 1 5 5 H 1.48490 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46868 * 119.99667 * 3 2 1 7 7 C 1.37874 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99709 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52706 * 109.31649 * 299.99849 * 9 7 2 11 11 C 1.52983 * 109.75124 * 180.73896 * 10 9 7 12 12 C 1.53040 * 109.32085 * 59.86090 * 11 10 9 13 13 C 1.52937 * 109.35501 * 299.63368 * 12 11 10 14 14 C 1.53053 * 109.69599 * 60.34075 * 13 12 11 15 15 H 1.08997 * 110.37852 * 61.75983 * 14 13 12 16 16 C 1.53446 * 108.87099 * 182.50604 * 14 13 12 17 17 N 1.46399 * 108.96587 * 63.13223 * 16 14 13 18 18 C 1.34143 * 121.46731 * 28.88409 * 17 16 14 19 19 O 1.21589 * 118.72539 * 179.81625 * 18 17 16 20 20 N 1.33689 * 122.40088 * 359.21213 * 18 17 16 21 21 H 0.97000 * 120.00102 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.42662 * 60.65612 * 10 9 7 23 23 H 1.08997 * 109.37795 * 300.79682 * 10 9 7 24 24 H 1.09002 * 109.50118 * 179.82531 * 11 10 9 25 25 H 1.09000 * 109.50417 * 299.89825 * 11 10 9 26 26 H 1.08995 * 109.49279 * 59.56016 * 12 11 10 27 27 H 1.08996 * 109.49295 * 179.63261 * 12 11 10 28 28 H 1.09000 * 109.41090 * 300.28160 * 13 12 11 29 29 H 1.08995 * 109.40688 * 180.40070 * 13 12 11 30 30 H 1.09005 * 109.55412 * 182.97945 * 16 14 13 31 31 H 1.08996 * 109.55645 * 303.18536 * 16 14 13 32 32 H 0.97001 * 119.26875 * 208.90273 * 17 16 14 33 33 H 0.97009 * 119.06510 * 181.15658 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 0.3741 -2.5761 1.2483 11 6 -0.3817 -3.9060 1.2676 12 6 0.6237 -5.0598 1.2773 13 6 1.4892 -4.9885 0.0184 14 6 2.2496 -3.6605 -0.0102 15 1 2.9155 -3.5858 0.8494 16 6 3.0620 -3.5817 -1.3096 17 7 2.1409 -3.5839 -2.4475 18 6 0.8988 -3.0880 -2.3440 19 8 0.1766 -3.1120 -3.3218 20 7 0.4232 -2.5798 -1.2025 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3406 -1.7531 1.2404 23 1 1.0016 -2.5028 2.1365 24 1 -1.0039 -3.9580 2.1612 25 1 -1.0115 -3.9797 0.3810 26 1 1.2589 -4.9813 2.1596 27 1 0.0881 -6.0088 1.2977 28 1 0.8526 -5.0611 -0.8634 29 1 2.2009 -5.8140 0.0210 30 1 3.6495 -2.6635 -1.3174 31 1 3.7283 -4.4417 -1.3760 32 1 2.4352 -3.9523 -3.2952 33 1 -0.4886 -2.2495 -1.1775 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238663025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -65.036375 kcal Electronic energy + Delta-G solvation = -16891.903102 eV Core-core repulsion = 14336.710752 eV Total energy + Delta-G solvation = -2555.192349 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.75372 -38.79121 -35.79536 -35.17671 -33.44471 -31.52025 -30.53319 -27.18853 -25.93208 -23.24627 -22.94896 -21.17015 -19.65153 -18.76492 -17.85580 -17.10214 -16.62239 -16.11604 -15.82033 -15.38516 -15.01852 -14.45568 -14.37953 -14.20912 -13.77900 -12.97014 -12.82095 -12.66369 -12.45261 -12.43908 -12.03116 -11.89024 -11.75467 -11.34880 -11.08301 -11.03622 -10.49729 -10.39207 -9.74390 -9.21266 -8.04418 -6.22853 1.41245 1.44768 1.48912 2.39985 2.45437 2.65715 3.16107 3.70792 3.97694 4.08930 4.15043 4.50220 4.55912 4.60445 4.83310 4.89298 4.95507 4.97535 5.04987 5.17833 5.29400 5.40021 5.47775 5.57568 5.63609 5.71363 5.98334 6.03537 6.32159 6.45238 6.65877 6.77911 7.39750 7.52747 8.06478 8.93105 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.013625 C = 0.011676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.087434 B = 2054.561939 C = 2397.438072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.035 3.965 3 Si 0.943 3.057 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.284 3.716 10 C -0.107 4.107 11 C -0.117 4.117 12 C -0.109 4.109 13 C -0.105 4.105 14 C -0.105 4.105 15 H 0.100 0.900 16 C 0.124 3.876 17 N -0.730 5.730 18 C 0.699 3.301 19 O -0.690 6.690 20 N -0.688 5.688 21 H 0.259 0.741 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -8.391 4.189 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.200 3.800 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.146 4.146 13 C -0.143 4.143 14 C -0.124 4.124 15 H 0.118 0.882 16 C 0.000 4.000 17 N -0.387 5.387 18 C 0.398 3.602 19 O -0.579 6.579 20 N -0.338 5.338 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.246 0.754 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.276 -8.271 3.958 10.580 hybrid contribution -0.090 1.526 -0.516 1.613 sum 5.186 -6.745 3.443 9.179 Atomic orbital electron populations 1.69886 1.06783 1.27053 1.50011 1.25556 0.95447 1.01677 0.94015 0.85864 0.78505 0.80177 0.78438 1.21066 1.21912 1.19023 1.21789 0.93209 0.91558 1.51282 0.92044 1.18109 0.87761 0.92012 0.82099 1.21534 0.99251 0.96760 0.97017 1.21557 0.97995 0.95725 1.00163 1.21468 0.97489 0.97619 0.98031 1.21496 0.98577 0.96525 0.97677 1.21797 0.97657 0.94918 0.98053 0.88219 1.21643 0.91375 1.02137 0.84853 1.44637 1.12311 1.66141 1.15592 1.15720 0.82588 0.78515 0.83354 1.90793 1.59388 1.68880 1.38812 1.45402 1.16738 1.61640 1.10043 0.93157 0.91656 0.92792 0.92132 0.94560 0.90923 0.91444 0.94601 0.90150 0.92853 0.87699 0.75419 0.77252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.84 10.47 21.45 0.22 -47.62 16 2 C 0.03 1.78 5.23 84.65 0.44 2.22 16 3 Si 0.94 41.77 29.54 68.60 2.03 43.80 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -26.13 7.45 25.60 0.19 -25.94 16 8 H 0.06 2.90 6.85 -2.91 -0.02 2.88 16 9 C 0.28 12.15 0.29 2.85 0.00 12.15 16 10 C -0.11 -4.41 4.56 30.49 0.14 -4.27 16 11 C -0.12 -4.02 5.79 30.60 0.18 -3.84 16 12 C -0.11 -3.07 5.93 30.59 0.18 -2.88 16 13 C -0.11 -3.15 4.90 30.59 0.15 -3.00 16 14 C -0.10 -3.54 2.13 -10.57 -0.02 -3.56 16 15 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 16 C 0.12 3.90 6.31 86.55 0.55 4.45 16 17 N -0.73 -27.21 5.21 -479.83 -2.50 -29.72 16 18 C 0.70 33.16 7.18 179.59 1.29 34.45 16 19 O -0.69 -37.88 17.92 -4.00 -0.07 -37.96 16 20 N -0.69 -32.57 3.36 -444.16 -1.49 -34.07 16 21 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 22 H 0.06 3.13 6.06 -2.39 -0.01 3.12 16 23 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.37 7.66 -2.39 -0.02 1.35 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.26 6.34 -2.39 -0.02 1.25 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.84 6.82 -2.38 -0.02 1.82 16 31 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.41 13.32 8.88 -92.71 -0.82 12.50 16 33 H 0.39 20.38 8.19 -92.70 -0.76 19.62 16 Total: -1.00 -61.53 253.69 0.83 -60.71 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: -0.45 Total: 35.08 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 3.09 Total: 9.77 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.77 Total: -111.40 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.07 Total: -37.96 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -61.53 0.83 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238663025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.331 kcal (2) G-P(sol) polarization free energy of solvation -61.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds