Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48501 * 109.46917 * 239.99711 * 3 2 1 5 5 H 1.48503 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47435 * 119.99509 * 3 2 1 7 7 C 1.37875 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00351 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.13084 * 334.41611 * 9 7 2 11 11 C 1.52801 * 109.17972 * 93.67479 * 9 7 2 12 12 C 1.53263 * 108.31233 * 56.97834 * 11 9 7 13 13 C 1.50298 * 108.66553 * 55.44321 * 12 11 9 14 14 O 1.21287 * 118.69879 * 154.10480 * 13 12 11 15 15 N 1.33980 * 122.60244 * 334.10159 * 13 12 11 16 16 C 1.47769 * 118.10066 * 180.50868 * 15 13 12 17 17 C 1.53157 * 108.44317 * 128.98807 * 16 15 13 18 18 N 1.46923 * 109.31451 * 54.49705 * 17 16 15 19 19 C 1.46914 * 111.08061 * 296.61499 * 18 17 16 20 20 C 1.45767 * 124.04477 * 0.66757 * 15 13 12 21 21 H 1.08999 * 108.16328 * 113.59234 * 20 15 13 22 22 H 0.97000 * 119.99428 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.70075 * 176.68677 * 11 9 7 24 24 H 1.08999 * 109.69728 * 297.27827 * 11 9 7 25 25 H 1.09000 * 109.60217 * 175.19541 * 12 11 9 26 26 H 1.08994 * 109.60449 * 295.68727 * 12 11 9 27 27 H 1.08999 * 109.64622 * 248.66779 * 16 15 13 28 28 H 1.08999 * 109.64739 * 9.09592 * 16 15 13 29 29 H 1.08997 * 109.50073 * 174.44714 * 17 16 15 30 30 H 1.09002 * 109.49353 * 294.54827 * 17 16 15 31 31 H 1.00903 * 110.99918 * 60.62136 * 18 17 16 32 32 H 1.09007 * 109.47643 * 302.37180 * 19 18 17 33 33 H 1.09000 * 109.48424 * 182.32739 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.2678 -2.3440 0.4448 11 6 1.0806 -2.9805 -1.4397 12 6 2.4703 -3.1007 -2.0747 13 6 3.3135 -4.0042 -1.2194 14 8 4.2308 -4.6063 -1.7362 15 7 3.0921 -4.1707 0.0915 16 6 3.9900 -5.0748 0.8397 17 6 4.5024 -4.3331 2.0779 18 7 3.3587 -3.8314 2.8518 19 6 2.5894 -2.8465 2.0794 20 6 2.0166 -3.5171 0.8269 21 1 1.3155 -4.2838 1.1566 22 1 -0.4849 0.8401 -0.0004 23 1 0.5883 -3.9529 -1.4463 24 1 0.4822 -2.2614 -1.9990 25 1 2.3798 -3.5240 -3.0751 26 1 2.9325 -2.1154 -2.1324 27 1 3.4409 -5.9648 1.1470 28 1 4.8301 -5.3626 0.2076 29 1 5.0875 -5.0154 2.6945 30 1 5.1272 -3.4956 1.7676 31 1 2.7690 -4.5904 3.1589 32 1 3.2425 -2.0248 1.7854 33 1 1.7735 -2.4617 2.6913 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259656413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -39.093610 kcal Electronic energy + Delta-G solvation = -16542.331093 eV Core-core repulsion = 13988.263706 eV Total energy + Delta-G solvation = -2554.067387 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.14096 -37.16305 -35.39762 -32.78903 -31.77543 -30.36340 -27.91817 -25.00339 -24.17056 -23.07578 -21.20831 -20.46324 -18.13871 -16.31610 -15.85717 -15.49223 -14.96537 -14.84701 -14.32700 -14.11756 -13.55434 -13.09733 -13.04725 -12.64889 -12.27950 -11.72133 -11.35794 -11.12449 -10.99622 -10.91590 -10.80885 -10.51936 -10.40554 -10.11323 -9.52703 -9.02262 -8.99161 -8.62770 -8.49648 -7.57286 -6.17532 -4.20969 3.24536 3.30139 3.31937 3.33720 3.61054 4.32160 4.68034 5.14855 5.27077 5.30973 5.47196 5.64288 5.78269 5.82079 5.93693 6.04763 6.06943 6.19879 6.23625 6.31386 6.54874 6.82415 6.90006 6.93542 7.13502 7.31786 7.43049 7.45892 7.72195 7.75175 8.14463 8.19517 8.82239 8.85117 9.43455 10.91328 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.011872 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.905979 B = 2357.923421 C = 2763.744462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.028 3.972 10 H 0.076 0.924 11 C -0.103 4.103 12 C -0.122 4.122 13 C 0.527 3.473 14 O -0.585 6.585 15 N -0.593 5.593 16 C 0.064 3.936 17 C 0.047 3.953 18 N -0.692 5.692 19 C 0.058 3.942 20 C 0.123 3.877 21 H 0.039 0.961 22 H 0.264 0.736 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.331 0.669 32 H 0.095 0.905 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -6.001 2.758 7.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.009 3.991 10 H 0.094 0.906 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.318 3.682 14 O -0.467 6.467 15 N -0.325 5.325 16 C -0.060 4.060 17 C -0.084 4.084 18 N -0.319 5.319 19 C -0.071 4.071 20 C 0.018 3.982 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.252 -5.664 2.858 7.129 hybrid contribution -0.106 0.387 -0.651 0.765 sum 3.146 -5.277 2.206 6.528 Atomic orbital electron populations 1.69880 1.05911 1.27063 1.49775 1.24917 0.94781 0.99090 0.94482 0.86719 0.79706 0.83197 0.78852 1.20213 1.21283 1.20080 1.20882 0.92623 0.89841 1.51609 0.92697 1.18829 0.97586 0.91966 0.90703 0.90612 1.21591 0.93996 0.98669 0.99881 1.21611 0.97359 1.00098 0.97057 1.20630 0.84154 0.81270 0.82177 1.90581 1.33603 1.50114 1.72365 1.47746 1.31408 1.45180 1.08194 1.22435 0.95678 0.92697 0.95212 1.22308 0.94317 0.99243 0.92511 1.60869 1.12136 1.18232 1.40684 1.22497 0.98352 0.94621 0.91647 1.21659 0.87062 0.95014 0.94431 0.94342 0.92639 0.95124 0.91076 0.90705 0.87524 0.92447 0.88799 0.90422 0.90651 0.85246 0.88632 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 12.79 55.43 0.71 -22.66 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.51 -12.27 5.13 -34.44 -0.18 -12.44 16 8 H 0.05 1.36 7.05 -52.48 -0.37 0.99 16 9 C 0.03 0.62 2.38 -92.47 -0.22 0.40 16 10 H 0.08 1.83 7.29 -51.93 -0.38 1.45 16 11 C -0.10 -2.12 5.59 -26.70 -0.15 -2.27 16 12 C -0.12 -2.45 5.69 -27.94 -0.16 -2.61 16 13 C 0.53 11.15 7.47 -11.54 -0.09 11.06 16 14 O -0.58 -13.55 16.09 5.55 0.09 -13.46 16 15 N -0.59 -11.38 2.99 -166.50 -0.50 -11.88 16 16 C 0.06 1.05 6.46 -3.27 -0.02 1.03 16 17 C 0.05 0.69 6.69 -3.73 -0.02 0.67 16 18 N -0.69 -10.75 6.87 -113.55 -0.78 -11.53 16 19 C 0.06 1.07 5.43 -3.72 -0.02 1.05 16 20 C 0.12 2.36 2.79 -68.82 -0.19 2.17 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.11 2.26 7.18 -51.93 -0.37 1.89 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.61 6.75 -51.93 -0.35 1.26 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.33 4.54 8.84 -39.29 -0.35 4.19 16 32 H 0.10 2.00 6.31 -51.93 -0.33 1.68 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -27.06 259.53 -7.40 -34.46 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.66 Total: 5.45 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.15 Total: 0.71 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.57 Total: -46.07 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.06 -7.40 -34.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.632 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds