Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99622 * 2 1 4 4 C 1.52998 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46610 * 303.24693 * 4 3 2 6 6 C 1.50704 * 109.46995 * 183.25275 * 4 3 2 7 7 H 1.07997 * 119.99716 * 245.43678 * 6 4 3 8 8 C 1.37881 * 119.99864 * 65.43809 * 6 4 3 9 9 N 1.31512 * 120.00375 * 9.41198 * 8 6 4 10 10 Si 1.86801 * 119.99604 * 189.40873 * 8 6 4 11 11 H 1.48505 * 109.46930 * 84.99680 * 10 8 6 12 12 H 1.48497 * 109.47090 * 204.99276 * 10 8 6 13 13 H 1.48497 * 109.47316 * 324.99727 * 10 8 6 14 14 C 1.50697 * 109.47741 * 63.24794 * 4 3 2 15 15 C 1.39870 * 126.03648 * 59.69294 * 14 4 3 16 16 N 1.30836 * 108.20090 * 179.81968 * 15 14 4 17 17 N 1.40081 * 108.20321 * 0.43817 * 16 15 14 18 18 C 1.46505 * 126.03626 * 179.70008 * 17 16 15 19 19 C 1.34944 * 107.93128 * 359.71989 * 17 16 15 20 20 C 1.50696 * 126.13084 * 180.02562 * 19 17 16 21 21 H 1.09005 * 109.47230 * 299.99792 * 1 2 3 22 22 H 1.08994 * 109.47561 * 60.00019 * 1 2 3 23 23 H 1.09004 * 109.46750 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47358 * 59.99958 * 3 2 1 25 25 H 1.09000 * 109.46912 * 300.00186 * 3 2 1 26 26 H 0.97002 * 120.00318 * 179.97438 * 9 8 6 27 27 H 1.07999 * 125.89839 * 0.02562 * 15 14 4 28 28 H 1.09005 * 109.46918 * 270.02588 * 18 17 16 29 29 H 1.09000 * 109.47140 * 30.02341 * 18 17 16 30 30 H 1.08997 * 109.47103 * 150.02405 * 18 17 16 31 31 H 1.08994 * 109.47032 * 269.97041 * 20 19 17 32 32 H 1.09000 * 109.47269 * 29.97358 * 20 19 17 33 33 H 1.09005 * 109.47112 * 149.97284 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8534 0.5942 0.8587 6 6 4.1481 2.5592 0.0800 7 1 4.7263 2.9420 -0.7480 8 6 3.9705 3.3279 1.2108 9 7 3.4292 2.7998 2.2867 10 14 4.4989 5.1197 1.2145 11 1 3.4120 5.9574 0.6470 12 1 4.7795 5.5501 2.6077 13 1 5.7252 5.2758 0.3916 14 6 3.9853 0.5078 -1.2696 15 6 3.7563 0.9646 -2.5716 16 7 4.2997 0.1143 -3.4045 17 7 4.8837 -0.9171 -2.6579 18 6 5.5932 -2.0785 -3.2003 19 6 4.6770 -0.6524 -1.3509 20 6 5.1351 -1.4970 -0.1900 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8464 0.8899 25 1 1.6885 1.8464 -0.8900 26 1 3.3046 3.3405 3.0823 27 1 3.2259 1.8654 -2.8426 28 1 4.8857 -2.8906 -3.3683 29 1 6.0659 -1.8073 -4.1442 30 1 6.3558 -2.4018 -2.4918 31 1 4.3623 -2.2249 0.0569 32 1 6.0530 -2.0190 -0.4603 33 1 5.3212 -0.8578 0.6732 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259851747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = 2.270920 kcal Electronic energy + Delta-G solvation = -15775.368092 eV Core-core repulsion = 13223.094406 eV Total energy + Delta-G solvation = -2552.273686 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99790 -38.58989 -35.77293 -34.14422 -33.30638 -31.09870 -27.86556 -27.44276 -27.00094 -25.83544 -23.36923 -21.25335 -20.00110 -18.34524 -17.28103 -16.79869 -16.60613 -16.31667 -16.19285 -15.42867 -14.93483 -14.74498 -14.21095 -13.89762 -13.51111 -13.41149 -13.21472 -12.92734 -12.80788 -12.74083 -12.47591 -12.32784 -11.89337 -11.62638 -11.33619 -11.12742 -10.59263 -10.16843 -9.92989 -8.86122 -8.09962 -6.20223 1.10602 1.44172 1.45764 1.54909 1.88465 2.13321 2.47726 3.07247 3.43300 3.83646 4.03963 4.36536 4.45789 4.50594 4.54760 4.58810 4.69692 4.71160 4.81084 4.83311 4.88257 5.03516 5.12148 5.15933 5.35311 5.55763 5.80307 5.91451 6.01606 6.28569 6.45032 6.65758 6.89383 6.96514 7.46665 8.96080 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023119 B = 0.010118 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.857797 B = 2766.775871 C = 3352.335650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.092 3.908 4 C 0.125 3.875 5 H 0.017 0.983 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.021 3.979 9 N -0.913 5.913 10 Si 0.949 3.051 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.272 1.272 14 C -0.206 4.206 15 C 0.040 3.960 16 N -0.334 5.334 17 N -0.383 5.383 18 C 0.096 3.904 19 C 0.060 3.940 20 C -0.076 4.076 21 H 0.034 0.966 22 H 0.039 0.961 23 H 0.098 0.902 24 H 0.035 0.965 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.175 0.825 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -8.352 -5.574 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.015 3.985 4 C 0.105 3.895 5 H 0.036 0.964 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.179 4.179 9 N -0.552 5.552 10 Si 0.775 3.225 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.216 4.216 15 C -0.144 4.144 16 N -0.156 5.156 17 N -0.168 5.168 18 C -0.044 4.044 19 C -0.067 4.067 20 C -0.135 4.135 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.116 0.884 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.192 0.808 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.027 -8.892 -6.690 11.175 hybrid contribution -0.356 1.689 1.033 2.011 sum 0.671 -7.203 -5.657 9.184 Atomic orbital electron populations 1.22787 0.81417 1.02961 0.99626 1.87827 1.20028 1.30216 1.95348 1.22567 0.96051 0.82272 0.97567 1.16945 0.89247 0.93967 0.89336 0.96440 1.21259 1.32564 1.00609 1.01299 0.93014 1.25698 0.95311 1.02036 0.94814 1.70082 1.45390 1.37082 1.02656 0.85707 0.78814 0.80859 0.77150 1.19833 1.20884 1.19682 1.20271 1.07659 0.97519 0.96196 1.23651 1.00017 0.99068 0.91622 1.77055 1.18075 1.00142 1.20374 1.48558 1.44896 1.19960 1.03375 1.22085 0.96868 0.83919 1.01486 1.21146 1.01109 0.97523 0.86887 1.20369 1.01910 0.98175 0.93015 0.94733 0.94271 0.88400 0.94644 0.95895 0.92754 0.80764 0.89825 0.88991 0.87449 0.89878 0.88736 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.41 -18.76 10.41 -148.98 -1.55 -20.31 16 3 C 0.09 4.54 5.13 71.98 0.37 4.91 16 4 C 0.12 6.45 2.19 -12.29 -0.03 6.43 16 5 H 0.02 0.99 6.74 -2.38 -0.02 0.98 16 6 C -0.52 -28.60 8.35 25.60 0.21 -28.39 16 7 H 0.05 2.88 7.71 -2.91 -0.02 2.85 16 8 C 0.02 1.15 5.18 84.66 0.44 1.59 16 9 N -0.91 -52.05 12.15 21.45 0.26 -51.79 16 10 Si 0.95 43.16 29.55 68.60 2.03 45.19 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C -0.21 -9.52 4.48 -20.14 -0.09 -9.61 16 15 C 0.04 1.78 11.42 85.24 0.97 2.75 16 16 N -0.33 -13.75 12.58 -57.02 -0.72 -14.47 16 17 N -0.38 -13.68 4.01 -356.02 -1.43 -15.11 16 18 C 0.10 2.15 11.27 127.77 1.44 3.59 16 19 C 0.06 2.37 6.93 41.40 0.29 2.66 16 20 C -0.08 -2.42 9.75 71.23 0.69 -1.73 16 21 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 24 H 0.04 1.91 6.83 -2.39 -0.02 1.90 16 25 H 0.02 1.10 7.92 -2.39 -0.02 1.08 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.18 7.24 8.06 -2.91 -0.02 7.22 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 1.79 7.05 -2.39 -0.02 1.77 16 31 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 2.20 7.08 -2.39 -0.02 2.18 16 33 H 0.07 2.47 7.14 -2.38 -0.02 2.45 16 Total: -1.00 -67.22 281.43 5.22 -61.99 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.09 Total: 10.06 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.55 Total: -15.56 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.89 Total: -81.37 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.55 Total: -20.31 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.22 5.22 -61.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259851747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.265 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds