Wall clock time and date at job start Mon Mar 30 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35285 * 117.00071 * 2 1 4 4 C 1.40259 * 126.51746 * 269.97488 * 3 2 1 5 5 C 1.41280 * 126.62211 * 0.02562 * 4 3 2 6 6 H 1.08000 * 120.00137 * 150.72555 * 5 4 3 7 7 C 1.39603 * 119.99843 * 330.71802 * 5 4 3 8 8 N 1.31150 * 120.00337 * 341.66653 * 7 5 4 9 9 Si 1.86809 * 119.99774 * 161.66120 * 7 5 4 10 10 H 1.48502 * 109.47078 * 60.00268 * 9 7 5 11 11 H 1.48497 * 109.46804 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47014 * 300.00355 * 9 7 5 13 13 C 1.41842 * 106.75770 * 180.02562 * 4 3 2 14 14 C 1.50693 * 125.90850 * 179.97438 * 13 4 3 15 15 N 1.30276 * 108.18537 * 359.97438 * 13 4 3 16 16 N 1.34916 * 126.51965 * 89.99792 * 3 2 1 17 17 C 1.46494 * 125.68746 * 359.71825 * 16 3 2 18 18 C 1.53004 * 109.47382 * 119.99878 * 17 16 3 19 19 C 1.53000 * 109.47366 * 239.99881 * 17 16 3 20 20 H 1.09006 * 109.46796 * 59.99998 * 1 2 3 21 21 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47100 * 300.00015 * 1 2 3 23 23 H 0.97001 * 120.00240 * 176.38323 * 8 7 5 24 24 H 1.09000 * 109.47168 * 84.83794 * 14 13 4 25 25 H 1.08998 * 109.47330 * 204.83585 * 14 13 4 26 26 H 1.08998 * 109.46942 * 324.83721 * 14 13 4 27 27 H 1.08997 * 109.47375 * 0.02562 * 17 16 3 28 28 H 1.08997 * 109.46674 * 59.99805 * 18 17 16 29 29 H 1.08996 * 109.47451 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.46981 * 300.00274 * 18 17 16 31 31 H 1.08994 * 109.47135 * 59.99745 * 19 17 16 32 32 H 1.08996 * 109.47240 * 180.02562 * 19 17 16 33 33 H 1.09004 * 109.47240 * 300.00066 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 6 2.4226 1.9488 -1.1272 5 6 2.2366 1.5837 -2.4793 6 1 2.1129 2.3474 -3.2328 7 6 2.2130 0.2356 -2.8413 8 7 2.7088 -0.6696 -2.0321 9 14 1.4750 -0.2790 -4.4785 10 1 2.2184 0.3765 -5.5844 11 1 1.5709 -1.7538 -4.6228 12 1 0.0487 0.1313 -4.5293 13 6 3.0290 3.1380 -0.6477 14 6 3.5950 4.2463 -1.4976 15 7 3.0121 3.1065 0.6546 16 7 2.4077 1.9208 1.0843 17 6 2.1992 1.5246 2.4791 18 6 3.5511 1.4260 3.1889 19 6 1.3295 2.5692 3.1815 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 2.6454 -1.6104 -2.2595 24 1 2.7961 4.9322 -1.7795 25 1 4.3546 4.7861 -0.9321 26 1 4.0436 3.8223 -2.3959 27 1 1.7011 0.5557 2.5111 28 1 4.0496 2.3948 3.1569 29 1 3.3960 1.1308 4.2266 30 1 4.1707 0.6819 2.6885 31 1 0.3664 2.6394 2.6759 32 1 1.1747 2.2746 4.2194 33 1 1.8280 3.5380 3.1496 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:39 Heat of formation + Delta-G solvation = 31.425533 kcal Electronic energy + Delta-G solvation = -16186.811068 eV Core-core repulsion = 13635.801621 eV Total energy + Delta-G solvation = -2551.009447 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.58120 -36.34447 -35.04118 -32.90921 -30.54271 -28.52535 -26.86851 -26.75014 -25.94910 -24.08253 -20.97156 -19.71406 -18.13395 -16.80851 -16.02616 -14.83840 -14.71144 -14.20688 -13.86018 -13.43163 -13.34845 -12.79693 -12.63928 -11.93706 -11.89767 -11.64348 -11.60549 -11.38474 -11.23687 -11.05893 -10.79997 -10.63947 -10.48086 -10.29741 -10.11684 -9.36204 -8.72139 -8.46845 -7.59683 -6.84964 -6.27418 -3.83663 3.09238 3.25614 3.27250 3.30687 3.69331 4.18405 4.28531 5.10237 5.23899 5.44706 5.54071 5.58118 5.86255 5.87844 6.01960 6.13399 6.16588 6.20702 6.27313 6.36652 6.44041 6.53407 6.56380 6.61824 6.79407 7.27709 7.51166 7.63677 7.82177 8.04431 8.58532 9.02518 9.21639 9.39796 9.44469 10.73361 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030214 B = 0.011085 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.491853 B = 2525.414580 C = 3067.144749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.259 6.259 3 C 0.121 3.879 4 C -0.003 4.003 5 C -0.458 4.458 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.787 5.787 9 Si 0.886 3.114 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.009 3.991 14 C -0.048 4.048 15 N -0.305 5.305 16 N -0.384 5.384 17 C 0.166 3.834 18 C -0.154 4.154 19 C -0.155 4.155 20 H 0.041 0.959 21 H 0.072 0.928 22 H 0.019 0.981 23 H 0.269 0.731 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.696 2.086 5.553 6.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.167 6.167 3 C -0.042 4.042 4 C -0.013 4.013 5 C -0.492 4.492 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.414 5.414 9 Si 0.712 3.288 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.156 4.156 14 C -0.107 4.107 15 N -0.133 5.133 16 N -0.182 5.182 17 C 0.062 3.938 18 C -0.212 4.212 19 C -0.213 4.213 20 H 0.060 0.940 21 H 0.091 0.909 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.272 2.111 6.653 7.341 hybrid contribution -0.923 -0.890 -1.397 1.896 sum -3.195 1.221 5.256 6.271 Atomic orbital electron populations 1.22868 0.84084 1.00640 0.99026 1.86200 1.16033 1.21981 1.92514 1.18994 1.09181 0.90311 0.85696 1.17607 0.99698 0.91263 0.92764 1.18358 1.47567 0.91697 0.91533 0.91220 1.25507 0.94003 0.96737 0.97384 1.69934 1.33530 1.01548 1.36359 0.86755 0.80476 0.77525 0.84049 1.19611 1.20977 1.19722 1.22155 1.03077 0.99178 0.91208 1.19820 0.98989 0.94253 0.97656 1.76301 1.21826 1.01743 1.13439 1.48067 1.51287 1.14988 1.03844 1.20773 0.96177 0.97556 0.79264 1.22077 0.97090 1.02934 0.99119 1.22102 0.99788 1.00095 0.99300 0.94044 0.90917 0.96217 0.92008 0.92635 0.93042 0.91164 0.89645 0.91707 0.92295 0.92314 0.92867 0.92128 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.13 101.05 1.12 1.76 16 2 O -0.26 -6.60 7.70 -17.55 -0.14 -6.73 16 3 C 0.12 3.19 6.53 -15.44 -0.10 3.09 16 4 C 0.00 -0.08 5.65 -106.60 -0.60 -0.69 16 5 C -0.46 -12.62 9.07 -37.92 -0.34 -12.97 16 6 H 0.07 1.85 7.91 -52.49 -0.41 1.43 16 7 C 0.08 2.13 5.09 -17.33 -0.09 2.04 16 8 N -0.79 -21.95 10.83 55.53 0.60 -21.35 16 9 Si 0.89 19.99 29.60 -169.99 -5.03 14.95 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.01 0.22 7.27 -81.88 -0.60 -0.37 16 14 C -0.05 -0.97 10.23 36.00 0.37 -0.60 16 15 N -0.31 -7.43 12.28 33.98 0.42 -7.01 16 16 N -0.38 -9.09 3.27 -53.98 -0.18 -9.26 16 17 C 0.17 3.11 3.67 -67.93 -0.25 2.86 16 18 C -0.15 -2.57 9.45 37.16 0.35 -2.22 16 19 C -0.15 -2.44 9.44 37.16 0.35 -2.09 16 20 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 27 H 0.09 1.58 7.75 -51.93 -0.40 1.18 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 284.15 15.07 4.28 4.28 Total: -1.00 -30.83 284.15 -4.85 -35.68 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.02 Total: -1.38 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 0.21 Total: -9.18 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.84 Total: -37.62 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.14 Total: -6.73 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.83 -4.85 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.104 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds