Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 108.96899 * 300.28141 * 9 7 2 11 11 C 1.51404 * 108.98028 * 181.47252 * 9 7 2 12 12 N 1.44381 * 112.68269 * 171.14932 * 11 9 7 13 13 C 1.43455 * 116.67586 * 82.29656 * 12 11 9 14 14 C 1.52361 * 113.47554 * 282.04977 * 13 12 11 15 15 H 1.09006 * 110.80960 * 303.87627 * 14 13 12 16 16 C 1.55023 * 107.18316 * 183.45703 * 14 13 12 17 17 C 1.54682 * 102.68409 * 211.10116 * 16 14 13 18 18 C 1.54021 * 102.56279 * 34.52601 * 17 16 14 19 19 N 1.46938 * 111.44521 * 67.09700 * 14 13 12 20 20 C 1.32826 * 128.40046 * 304.11679 * 19 14 13 21 21 O 1.21278 * 114.96720 * 195.74035 * 20 19 14 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08996 * 108.84100 * 292.06945 * 11 9 7 24 24 H 1.09004 * 108.83442 * 50.40769 * 11 9 7 25 25 H 1.00902 * 111.03328 * 210.82800 * 12 11 9 26 26 H 1.08999 * 108.68182 * 161.01053 * 13 12 11 27 27 H 1.08996 * 108.57520 * 43.00797 * 13 12 11 28 28 H 1.08999 * 110.76923 * 92.80020 * 16 14 13 29 29 H 1.08999 * 110.92770 * 329.47035 * 16 14 13 30 30 H 1.08996 * 110.79541 * 276.25700 * 17 16 14 31 31 H 1.09006 * 110.95490 * 152.86799 * 17 16 14 32 32 H 1.09005 * 109.91209 * 212.19334 * 18 17 16 33 33 H 1.09004 * 109.91250 * 90.93317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6277 -2.5442 0.8983 11 6 2.2446 -3.6410 0.0402 12 7 1.6133 -4.9220 0.2530 13 6 1.0532 -5.5636 -0.9014 14 6 -0.2910 -4.9847 -1.3251 15 1 -1.0052 -5.0215 -0.5024 16 6 -0.7998 -5.8340 -2.5180 17 6 -1.6105 -4.8080 -3.3441 18 6 -0.8142 -3.5061 -3.1360 19 7 -0.1516 -3.6074 -1.8176 20 6 0.3784 -2.5591 -1.1974 21 8 0.1089 -1.4836 -1.6887 22 1 -0.4850 0.8400 0.0004 23 1 2.7851 -3.6664 -0.9059 24 1 2.9573 -3.4630 0.8456 25 1 2.2253 -5.5486 0.7538 26 1 0.9238 -6.6236 -0.6833 27 1 1.7541 -5.4614 -1.7298 28 1 -1.4414 -6.6436 -2.1702 29 1 0.0339 -6.2266 -3.1001 30 1 -2.6228 -4.7090 -2.9524 31 1 -1.6306 -5.0849 -4.3983 32 1 -1.4906 -2.6514 -3.1469 33 1 -0.0650 -3.3997 -3.9207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259997171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -5.059376 kcal Electronic energy + Delta-G solvation = -16438.055654 eV Core-core repulsion = 13885.464102 eV Total energy + Delta-G solvation = -2552.591552 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53287 -36.56637 -35.83586 -32.49425 -30.74257 -30.20584 -28.89032 -25.01624 -23.13709 -22.98215 -20.76664 -20.11721 -17.91082 -16.81426 -15.72299 -15.58940 -15.25532 -14.42296 -14.14202 -13.90349 -13.40293 -12.82716 -12.61123 -12.36307 -11.88942 -11.75606 -11.30845 -10.98900 -10.83160 -10.68873 -10.58222 -10.49729 -10.40799 -10.18686 -9.56659 -9.11355 -8.25708 -7.84282 -7.58567 -7.42269 -5.78651 -3.84754 3.43665 3.48333 3.50006 4.09242 4.42831 4.54950 4.69940 4.91646 5.08667 5.21346 5.50483 5.58503 5.63204 5.78151 5.84093 5.94429 5.96598 6.09212 6.14420 6.38002 6.41830 6.50954 6.56735 6.75720 6.98604 7.49405 7.56805 7.89177 7.99059 8.09279 8.33001 8.92542 9.22672 9.78469 10.06690 11.29477 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.010243 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.138975 B = 2732.898627 C = 3289.972271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.089 3.911 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.060 3.940 10 H 0.057 0.943 11 C 0.091 3.909 12 N -0.721 5.721 13 C 0.078 3.922 14 C 0.138 3.862 15 H 0.070 0.930 16 C -0.127 4.127 17 C -0.131 4.131 18 C 0.109 3.891 19 N -0.627 5.627 20 C 0.505 3.495 21 O -0.491 6.491 22 H 0.255 0.745 23 H 0.017 0.983 24 H 0.067 0.933 25 H 0.341 0.659 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -12.694 -3.395 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.119 4.119 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.075 0.925 9 C 0.038 3.962 10 H 0.074 0.926 11 C -0.038 4.038 12 N -0.353 5.353 13 C -0.053 4.053 14 C 0.032 3.968 15 H 0.087 0.913 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.014 4.014 19 N -0.367 5.367 20 C 0.294 3.706 21 O -0.361 6.361 22 H 0.065 0.935 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.430 -11.554 -3.502 12.157 hybrid contribution 1.038 0.515 -0.467 1.250 sum -0.391 -11.039 -3.969 11.737 Atomic orbital electron populations 1.70071 1.06076 1.25943 1.44812 1.24807 0.94514 0.98715 0.93825 0.86694 0.79555 0.83501 0.78251 1.20456 1.21483 1.20430 1.20515 0.92167 0.89055 1.55982 0.92496 1.18132 0.92593 0.93390 0.92087 0.92566 1.21132 0.96226 0.87349 0.99045 1.56091 1.44981 1.06426 1.27763 1.21287 0.95644 0.96666 0.91679 1.21547 0.96309 0.83286 0.95616 0.91252 1.22734 0.99730 0.97505 0.96591 1.22465 0.99086 0.95340 1.00048 1.21743 0.95772 0.97152 0.86781 1.48687 1.60720 1.08380 1.18961 1.21489 0.80797 0.81784 0.86512 1.90656 1.56613 1.28076 1.60725 0.93519 0.96521 0.91475 0.83951 0.91370 0.95899 0.90685 0.91055 0.91169 0.90769 0.91634 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -26.15 10.64 55.43 0.59 -25.56 16 2 C 0.09 2.66 4.62 -17.82 -0.08 2.58 16 3 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.54 -15.62 8.25 -34.44 -0.28 -15.91 16 8 H 0.06 1.59 7.73 -52.49 -0.41 1.19 16 9 C 0.06 1.57 2.36 -94.67 -0.22 1.35 16 10 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 11 C 0.09 1.91 5.26 -5.98 -0.03 1.88 16 12 N -0.72 -12.37 6.18 -119.42 -0.74 -13.11 16 13 C 0.08 1.20 5.20 -5.98 -0.03 1.17 16 14 C 0.14 2.32 3.68 -66.95 -0.25 2.08 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.13 -1.59 6.35 -24.78 -0.16 -1.75 16 17 C -0.13 -1.76 6.98 -25.31 -0.18 -1.93 16 18 C 0.11 2.03 6.53 -2.74 -0.02 2.01 16 19 N -0.63 -13.53 3.12 -164.56 -0.51 -14.04 16 20 C 0.50 13.47 7.01 -12.79 -0.09 13.38 16 21 O -0.49 -15.12 11.90 5.56 0.07 -15.06 16 22 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.36 7.80 -51.93 -0.41 -0.04 16 24 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 25 H 0.34 4.72 8.86 -39.29 -0.35 4.37 16 26 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.02 0.37 7.80 -51.93 -0.40 -0.03 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.36 7.78 -51.93 -0.40 0.96 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 260.10 15.07 3.92 3.92 Total: -1.00 -34.17 260.10 -7.92 -42.10 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.89 Total: -0.83 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.34 Total: 4.86 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.66 Total: -52.71 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.07 Total: -15.06 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.17 -7.92 -42.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.036 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds