Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 108.96899 * 300.28141 * 9 7 2 11 11 C 1.51404 * 108.98028 * 181.47252 * 9 7 2 12 12 N 1.44381 * 112.68269 * 171.14932 * 11 9 7 13 13 C 1.43455 * 116.67586 * 82.29656 * 12 11 9 14 14 C 1.52361 * 113.47554 * 282.04977 * 13 12 11 15 15 H 1.09006 * 110.80960 * 303.87627 * 14 13 12 16 16 C 1.55023 * 107.18316 * 183.45703 * 14 13 12 17 17 C 1.54682 * 102.68409 * 211.10116 * 16 14 13 18 18 C 1.54021 * 102.56279 * 34.52601 * 17 16 14 19 19 N 1.46938 * 111.44521 * 67.09700 * 14 13 12 20 20 C 1.32826 * 128.40046 * 304.11679 * 19 14 13 21 21 O 1.21278 * 114.96720 * 195.74035 * 20 19 14 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08996 * 108.84100 * 292.06945 * 11 9 7 24 24 H 1.09004 * 108.83442 * 50.40769 * 11 9 7 25 25 H 1.00902 * 111.03328 * 210.82800 * 12 11 9 26 26 H 1.08999 * 108.68182 * 161.01053 * 13 12 11 27 27 H 1.08996 * 108.57520 * 43.00797 * 13 12 11 28 28 H 1.08999 * 110.76923 * 92.80020 * 16 14 13 29 29 H 1.08999 * 110.92770 * 329.47035 * 16 14 13 30 30 H 1.08996 * 110.79541 * 276.25700 * 17 16 14 31 31 H 1.09006 * 110.95490 * 152.86799 * 17 16 14 32 32 H 1.09005 * 109.91209 * 212.19334 * 18 17 16 33 33 H 1.09004 * 109.91250 * 90.93317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6277 -2.5442 0.8983 11 6 2.2446 -3.6410 0.0402 12 7 1.6133 -4.9220 0.2530 13 6 1.0532 -5.5636 -0.9014 14 6 -0.2910 -4.9847 -1.3251 15 1 -1.0052 -5.0215 -0.5024 16 6 -0.7998 -5.8340 -2.5180 17 6 -1.6105 -4.8080 -3.3441 18 6 -0.8142 -3.5061 -3.1360 19 7 -0.1516 -3.6074 -1.8176 20 6 0.3784 -2.5591 -1.1974 21 8 0.1089 -1.4836 -1.6887 22 1 -0.4850 0.8400 0.0004 23 1 2.7851 -3.6664 -0.9059 24 1 2.9573 -3.4630 0.8456 25 1 2.2253 -5.5486 0.7538 26 1 0.9238 -6.6236 -0.6833 27 1 1.7541 -5.4614 -1.7298 28 1 -1.4414 -6.6436 -2.1702 29 1 0.0339 -6.2266 -3.1001 30 1 -2.6228 -4.7090 -2.9524 31 1 -1.6306 -5.0849 -4.3983 32 1 -1.4906 -2.6514 -3.1469 33 1 -0.0650 -3.3997 -3.9207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = -31.505449 kcal Electronic energy + Delta-G solvation = -16439.202441 eV Core-core repulsion = 13885.464102 eV Total energy + Delta-G solvation = -2553.738339 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.19960 -38.32068 -37.38161 -34.58276 -32.50735 -31.76579 -30.48550 -26.82893 -24.91516 -24.58902 -22.04398 -21.69124 -19.68286 -18.60369 -17.59110 -17.24516 -16.66309 -16.44298 -15.87527 -15.58649 -14.96469 -14.45363 -14.07537 -13.96849 -13.62381 -13.19682 -12.99333 -12.80949 -12.63519 -12.51161 -12.17321 -11.95159 -11.71776 -11.60211 -11.50573 -11.23494 -10.45747 -9.77478 -9.38851 -9.03306 -8.02962 -6.15037 1.37409 1.42579 1.48273 2.37168 2.44111 2.55404 3.33014 3.36606 3.74502 3.83868 4.11147 4.26126 4.29436 4.42421 4.52625 4.59324 4.75359 4.79450 4.87457 4.95393 5.00392 5.11550 5.18739 5.27815 5.40520 5.47387 5.78272 5.87877 6.11466 6.47285 6.73927 6.79865 7.29380 7.52482 8.06984 9.04915 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.010243 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.138975 B = 2732.898627 C = 3289.972271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.033 3.967 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.557 4.557 8 H 0.061 0.939 9 C 0.054 3.946 10 H 0.022 0.978 11 C 0.108 3.892 12 N -0.724 5.724 13 C 0.076 3.924 14 C 0.120 3.880 15 H 0.060 0.940 16 C -0.110 4.110 17 C -0.117 4.117 18 C 0.100 3.900 19 N -0.631 5.631 20 C 0.497 3.503 21 O -0.548 6.548 22 H 0.248 0.752 23 H 0.008 0.992 24 H 0.075 0.925 25 H 0.365 0.635 26 H 0.118 0.882 27 H 0.019 0.981 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.031 0.969 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -15.446 -3.940 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.171 4.171 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.079 0.921 9 C 0.032 3.968 10 H 0.040 0.960 11 C -0.022 4.022 12 N -0.358 5.358 13 C -0.054 4.054 14 C 0.016 3.984 15 H 0.078 0.922 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.023 4.023 19 N -0.369 5.369 20 C 0.287 3.713 21 O -0.423 6.423 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.094 0.906 25 H 0.187 0.813 26 H 0.136 0.864 27 H 0.037 0.963 28 H 0.131 0.869 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.049 0.951 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.871 -14.399 -4.033 14.978 hybrid contribution 0.835 1.283 -0.307 1.561 sum -0.037 -13.116 -4.341 13.816 Atomic orbital electron populations 1.70262 1.07781 1.26124 1.46415 1.25695 0.95316 1.02548 0.93539 0.85674 0.78325 0.79015 0.78841 1.20393 1.21495 1.18265 1.20968 0.92591 0.90627 1.55322 0.92126 1.18056 0.93118 0.94907 0.90691 0.96022 1.20745 0.94681 0.87845 0.98903 1.55911 1.45250 1.05594 1.29027 1.21428 0.94255 0.98883 0.90831 1.21998 0.97585 0.81294 0.97507 0.92239 1.22746 1.00633 0.97125 0.94293 1.22460 0.98386 0.92147 1.02516 1.21967 0.95648 0.99323 0.85314 1.48546 1.59172 1.09610 1.19586 1.21399 0.80909 0.82403 0.86594 1.90616 1.58571 1.30523 1.62579 0.94256 0.97427 0.90650 0.81280 0.86414 0.96256 0.86890 0.89154 0.90675 0.87352 0.95084 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -57.15 10.64 21.45 0.23 -56.92 16 2 C 0.03 2.05 4.62 84.65 0.39 2.44 16 3 Si 0.96 47.93 29.54 68.60 2.03 49.95 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.56 -33.29 8.25 25.60 0.21 -33.08 16 8 H 0.06 3.45 7.73 -2.91 -0.02 3.43 16 9 C 0.05 2.95 2.36 -13.42 -0.03 2.92 16 10 H 0.02 1.32 8.14 -2.39 -0.02 1.31 16 11 C 0.11 4.50 5.26 86.25 0.45 4.95 16 12 N -0.72 -23.31 6.18 -531.75 -3.29 -26.60 16 13 C 0.08 2.08 5.20 86.73 0.45 2.53 16 14 C 0.12 3.76 3.68 45.39 0.17 3.93 16 15 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 16 C -0.11 -2.22 6.35 31.86 0.20 -2.02 16 17 C -0.12 -2.75 6.98 31.51 0.22 -2.53 16 18 C 0.10 3.75 6.53 86.45 0.56 4.31 16 19 N -0.63 -27.41 3.12 -794.01 -2.47 -29.88 16 20 C 0.50 27.57 7.01 87.35 0.61 28.19 16 21 O -0.55 -35.60 11.90 -3.02 -0.04 -35.64 16 22 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.01 0.33 7.80 -2.39 -0.02 0.31 16 24 H 0.08 2.96 8.07 -2.38 -0.02 2.94 16 25 H 0.36 8.91 8.86 -89.69 -0.79 8.12 16 26 H 0.12 2.13 8.12 -2.39 -0.02 2.11 16 27 H 0.02 0.56 7.80 -2.39 -0.02 0.54 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.56 7.83 -2.39 -0.02 1.54 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.03 1.35 7.78 -2.38 -0.02 1.33 16 33 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -80.01 260.10 0.00 -80.01 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.30 Total: 7.45 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 3.24 Total: 11.63 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -5.53 Total: -113.40 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.04 Total: -35.64 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -80.01 0.00 -80.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.507 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds