Wall clock time and date at job start Mon Mar 30 2020 03:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30270 * 125.91178 * 2 1 4 4 N 1.39845 * 109.46752 * 180.26349 * 3 2 1 5 5 C 1.46496 * 125.68544 * 179.74136 * 4 3 2 6 6 C 1.53007 * 109.47236 * 239.95927 * 5 4 3 7 7 C 1.53004 * 109.47367 * 359.95840 * 5 4 3 8 8 C 1.52995 * 109.47196 * 119.96020 * 5 4 3 9 9 C 1.34924 * 108.62940 * 359.71074 * 4 3 2 10 10 O 1.35282 * 126.52239 * 180.02562 * 9 4 3 11 11 C 1.40259 * 106.95910 * 359.97438 * 9 4 3 12 12 C 1.41279 * 126.61868 * 180.02562 * 11 9 4 13 13 H 1.08001 * 119.99912 * 208.16767 * 12 11 9 14 14 C 1.39597 * 120.00085 * 28.17444 * 12 11 9 15 15 N 1.31156 * 120.00023 * 18.49921 * 14 12 11 16 16 Si 1.86803 * 120.00181 * 198.49623 * 14 12 11 17 17 H 1.48507 * 109.46723 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47176 * 119.99709 * 16 14 12 19 19 H 1.48500 * 109.47527 * 240.00245 * 16 14 12 20 20 H 1.09003 * 109.46823 * 265.05398 * 1 2 3 21 21 H 1.09002 * 109.46764 * 25.05420 * 1 2 3 22 22 H 1.09000 * 109.46990 * 145.05606 * 1 2 3 23 23 H 1.08995 * 109.47145 * 60.00001 * 6 5 4 24 24 H 1.09006 * 109.47083 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.46730 * 299.99748 * 6 5 4 26 26 H 1.08998 * 109.47032 * 59.99939 * 7 5 4 27 27 H 1.08999 * 109.47001 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47060 * 300.00027 * 7 5 4 29 29 H 1.08998 * 109.47563 * 59.99766 * 8 5 4 30 30 H 1.09006 * 109.47381 * 180.02562 * 8 5 4 31 31 H 1.09007 * 109.47179 * 299.99989 * 8 5 4 32 32 H 0.96697 * 114.00056 * 270.00109 * 10 9 4 33 33 H 0.96995 * 119.99808 * 184.87614 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0551 0.0000 4 7 3.6123 0.6592 -0.0061 5 6 4.7687 1.5585 -0.0133 6 6 5.6084 1.2995 -1.2659 7 6 4.2859 3.0104 -0.0143 8 6 5.6198 1.3050 1.2326 9 6 3.6638 -0.6890 -0.0034 10 8 4.7809 -1.4521 -0.0071 11 6 2.3388 -1.1490 0.0050 12 6 1.9146 -2.4966 0.0108 13 1 0.9636 -2.7652 -0.4249 14 6 2.7246 -3.4809 0.5797 15 7 3.6789 -3.1435 1.4138 16 14 2.4494 -5.2787 0.1532 17 1 1.3196 -5.3929 -0.8038 18 1 3.6796 -5.8346 -0.4655 19 1 2.1305 -6.0375 1.3892 20 1 -0.3633 -0.0886 1.0239 21 1 -0.3633 0.9310 -0.4352 22 1 -0.3633 -0.8424 -0.5886 23 1 5.0022 1.4801 -2.1535 24 1 6.4692 1.9684 -1.2710 25 1 5.9525 0.2653 -1.2651 26 1 3.6877 3.1949 0.8780 27 1 5.1463 3.6794 -0.0193 28 1 3.6796 3.1910 -0.9019 29 1 5.9639 0.2707 1.2333 30 1 6.4800 1.9745 1.2274 31 1 5.0216 1.4895 2.1249 32 1 5.1015 -1.6758 -0.8915 33 1 4.2866 -3.8186 1.7542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:52 Heat of formation + Delta-G solvation = 24.565653 kcal Electronic energy + Delta-G solvation = -16229.651853 eV Core-core repulsion = 13678.344939 eV Total energy + Delta-G solvation = -2551.306914 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68339 -36.05535 -35.45986 -32.91409 -30.61491 -28.36239 -27.12775 -26.95261 -26.25760 -24.23012 -20.57167 -19.21028 -18.23661 -16.86922 -15.76500 -15.14475 -14.65112 -14.21471 -13.59131 -13.38278 -12.82944 -12.62816 -12.38985 -12.02183 -11.86831 -11.54286 -11.38521 -11.33332 -11.30083 -11.22168 -10.98039 -10.65918 -10.48257 -10.41901 -10.30485 -9.46165 -8.79458 -8.55199 -7.55805 -6.84437 -6.24184 -3.80136 3.13493 3.29757 3.30623 3.35093 3.66789 4.23887 4.30754 5.09317 5.29696 5.39849 5.50233 5.70301 5.81873 5.86231 5.98717 6.06764 6.17272 6.19717 6.26544 6.38084 6.47418 6.60513 6.61180 6.73137 6.82891 7.30645 7.54550 7.66246 7.93564 8.17419 8.63219 9.06459 9.25159 9.43593 9.48651 10.76037 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.010739 C = 0.008725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.389443 B = 2606.629112 C = 3208.577197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.009 3.991 3 N -0.311 5.311 4 N -0.382 5.382 5 C 0.191 3.809 6 C -0.155 4.155 7 C -0.135 4.135 8 C -0.155 4.155 9 C 0.139 3.861 10 O -0.425 6.425 11 C -0.016 4.016 12 C -0.457 4.457 13 H 0.069 0.931 14 C 0.077 3.923 15 N -0.788 5.788 16 Si 0.886 3.114 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.283 1.283 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.340 0.660 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 5.936 -3.394 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.156 4.156 3 N -0.139 5.139 4 N -0.181 5.181 5 C 0.106 3.894 6 C -0.214 4.214 7 C -0.192 4.192 8 C -0.213 4.213 9 C -0.025 4.025 10 O -0.221 6.221 11 C -0.026 4.026 12 C -0.491 4.491 13 H 0.087 0.913 14 C -0.138 4.138 15 N -0.416 5.416 16 Si 0.712 3.288 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.209 1.209 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.191 0.809 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.348 7.065 -2.562 8.227 hybrid contribution 0.299 -1.955 -0.585 2.063 sum 3.647 5.110 -3.147 7.023 Atomic orbital electron populations 1.19804 0.88765 1.00747 1.01271 1.22133 0.95497 0.91760 1.06165 1.76338 0.86191 1.23555 1.27808 1.48225 1.03422 1.03948 1.62457 1.20191 0.84015 0.89877 0.95280 1.22197 0.99394 1.02445 0.97326 1.21797 1.00621 0.93449 1.03355 1.22188 0.98844 1.03184 0.97075 1.18760 0.87714 0.79502 1.16526 1.85000 1.41112 1.67329 1.28700 1.17630 0.88238 0.93185 1.03575 1.18401 1.05097 0.90124 1.35458 0.91314 1.25501 0.95495 0.99497 0.93322 1.69965 1.14653 1.34830 1.22182 0.86646 0.78678 0.84730 0.78725 1.19134 1.20615 1.20866 0.92311 0.93238 0.91545 0.92426 0.91717 0.91919 0.91863 0.92474 0.91955 0.90691 0.92308 0.92534 0.80913 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.23 36.01 0.37 -0.58 16 2 C 0.01 0.23 7.27 -81.87 -0.60 -0.37 16 3 N -0.31 -7.54 11.50 33.98 0.39 -7.15 16 4 N -0.38 -8.84 3.45 -47.78 -0.16 -9.00 16 5 C 0.19 3.50 1.16 -131.82 -0.15 3.35 16 6 C -0.16 -2.43 8.50 37.16 0.32 -2.11 16 7 C -0.13 -2.16 7.96 37.16 0.30 -1.86 16 8 C -0.15 -2.72 8.50 37.16 0.32 -2.41 16 9 C 0.14 3.57 6.81 -15.43 -0.11 3.46 16 10 O -0.42 -10.27 9.00 -17.54 -0.16 -10.43 16 11 C -0.02 -0.44 5.67 -106.60 -0.60 -1.04 16 12 C -0.46 -12.62 9.07 -37.92 -0.34 -12.96 16 13 H 0.07 1.84 7.69 -52.49 -0.40 1.43 16 14 C 0.08 2.06 5.10 -17.33 -0.09 1.97 16 15 N -0.79 -22.03 10.74 55.53 0.60 -21.43 16 16 Si 0.89 20.03 29.60 -169.99 -5.03 15.00 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 1.28 7.89 -51.93 -0.41 0.87 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.01 6.53 -51.93 -0.34 0.67 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.34 7.00 8.45 45.56 0.39 7.39 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -31.14 274.97 -4.88 -36.02 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.07 Total: 5.41 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.59 Total: -12.56 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.82 Total: -37.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.16 Total: -10.43 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.14 -4.88 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.589 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds