Wall clock time and date at job start Mon Mar 30 2020 03:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30270 * 125.91178 * 2 1 4 4 N 1.39845 * 109.46752 * 180.26349 * 3 2 1 5 5 C 1.46496 * 125.68544 * 179.74136 * 4 3 2 6 6 C 1.53007 * 109.47236 * 239.95927 * 5 4 3 7 7 C 1.53004 * 109.47367 * 359.95840 * 5 4 3 8 8 C 1.52995 * 109.47196 * 119.96020 * 5 4 3 9 9 C 1.34924 * 108.62940 * 359.71074 * 4 3 2 10 10 O 1.35282 * 126.52239 * 180.02562 * 9 4 3 11 11 C 1.40259 * 106.95910 * 359.97438 * 9 4 3 12 12 C 1.41279 * 126.61868 * 180.02562 * 11 9 4 13 13 H 1.08001 * 119.99912 * 208.16767 * 12 11 9 14 14 C 1.39597 * 120.00085 * 28.17444 * 12 11 9 15 15 N 1.31156 * 120.00023 * 18.49921 * 14 12 11 16 16 Si 1.86803 * 120.00181 * 198.49623 * 14 12 11 17 17 H 1.48507 * 109.46723 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47176 * 119.99709 * 16 14 12 19 19 H 1.48500 * 109.47527 * 240.00245 * 16 14 12 20 20 H 1.09003 * 109.46823 * 265.05398 * 1 2 3 21 21 H 1.09002 * 109.46764 * 25.05420 * 1 2 3 22 22 H 1.09000 * 109.46990 * 145.05606 * 1 2 3 23 23 H 1.08995 * 109.47145 * 60.00001 * 6 5 4 24 24 H 1.09006 * 109.47083 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.46730 * 299.99748 * 6 5 4 26 26 H 1.08998 * 109.47032 * 59.99939 * 7 5 4 27 27 H 1.08999 * 109.47001 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47060 * 300.00027 * 7 5 4 29 29 H 1.08998 * 109.47563 * 59.99766 * 8 5 4 30 30 H 1.09006 * 109.47381 * 180.02562 * 8 5 4 31 31 H 1.09007 * 109.47179 * 299.99989 * 8 5 4 32 32 H 0.96697 * 114.00056 * 270.00109 * 10 9 4 33 33 H 0.96995 * 119.99808 * 184.87614 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0551 0.0000 4 7 3.6123 0.6592 -0.0061 5 6 4.7687 1.5585 -0.0133 6 6 5.6084 1.2995 -1.2659 7 6 4.2859 3.0104 -0.0143 8 6 5.6198 1.3050 1.2326 9 6 3.6638 -0.6890 -0.0034 10 8 4.7809 -1.4521 -0.0071 11 6 2.3388 -1.1490 0.0050 12 6 1.9146 -2.4966 0.0108 13 1 0.9636 -2.7652 -0.4249 14 6 2.7246 -3.4809 0.5797 15 7 3.6789 -3.1435 1.4138 16 14 2.4494 -5.2787 0.1532 17 1 1.3196 -5.3929 -0.8038 18 1 3.6796 -5.8346 -0.4655 19 1 2.1305 -6.0375 1.3892 20 1 -0.3633 -0.0886 1.0239 21 1 -0.3633 0.9310 -0.4352 22 1 -0.3633 -0.8424 -0.5886 23 1 5.0022 1.4801 -2.1535 24 1 6.4692 1.9684 -1.2710 25 1 5.9525 0.2653 -1.2651 26 1 3.6877 3.1949 0.8780 27 1 5.1463 3.6794 -0.0193 28 1 3.6796 3.1910 -0.9019 29 1 5.9639 0.2707 1.2333 30 1 6.4800 1.9745 1.2274 31 1 5.0216 1.4895 2.1249 32 1 5.1015 -1.6758 -0.8915 33 1 4.2866 -3.8186 1.7542 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:52 Heat of formation + Delta-G solvation = 3.053292 kcal Electronic energy + Delta-G solvation = -16230.584699 eV Core-core repulsion = 13678.344939 eV Total energy + Delta-G solvation = -2552.239760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.50413 -37.62416 -37.33295 -34.88049 -32.34051 -30.31095 -28.57601 -28.29124 -27.85418 -26.17363 -22.36326 -20.95013 -20.10164 -18.73028 -17.58743 -16.91573 -16.47288 -15.82999 -15.11478 -15.01472 -14.56214 -14.33415 -14.06752 -13.39751 -13.27844 -13.14302 -13.02365 -12.92687 -12.86586 -12.74046 -12.67884 -12.46065 -12.13550 -11.99000 -11.94181 -11.35250 -10.73271 -10.47219 -9.36916 -8.83730 -8.22754 -5.84861 1.30765 1.46083 1.47333 1.58646 1.99014 2.29186 2.42318 3.46301 3.65241 3.89952 3.96593 4.08749 4.33288 4.61613 4.64230 4.70273 4.76487 4.84344 4.88540 4.91066 4.99887 5.10969 5.14452 5.30000 5.34044 5.42694 5.57534 5.77269 6.05666 6.41967 6.60283 7.11040 7.24720 7.50749 7.59499 8.78569 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.010739 C = 0.008725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.389443 B = 2606.629112 C = 3208.577197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.008 4.008 3 N -0.317 5.317 4 N -0.379 5.379 5 C 0.171 3.829 6 C -0.148 4.148 7 C -0.126 4.126 8 C -0.147 4.147 9 C 0.143 3.857 10 O -0.432 6.432 11 C -0.068 4.068 12 C -0.483 4.483 13 H 0.065 0.935 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.959 3.041 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.281 1.281 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.034 0.966 32 H 0.356 0.644 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 6.653 -4.102 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.173 4.173 3 N -0.146 5.146 4 N -0.178 5.178 5 C 0.088 3.912 6 C -0.206 4.206 7 C -0.184 4.184 8 C -0.205 4.205 9 C -0.023 4.023 10 O -0.230 6.230 11 C -0.078 4.078 12 C -0.518 4.518 13 H 0.083 0.917 14 C -0.176 4.176 15 N -0.456 5.456 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.207 1.207 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.209 0.791 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.195 7.810 -3.285 9.454 hybrid contribution 0.117 -2.048 -0.362 2.083 sum 4.312 5.762 -3.646 8.067 Atomic orbital electron populations 1.19864 0.86142 1.02178 1.01922 1.22733 0.97491 0.91116 1.05926 1.76287 0.86833 1.23490 1.27991 1.48676 1.04282 1.03889 1.60945 1.20802 0.83002 0.90414 0.96939 1.22154 1.00118 1.02902 0.95433 1.21767 1.01995 0.92470 1.02162 1.22134 0.99875 1.02684 0.95792 1.18931 0.87678 0.80736 1.14937 1.84932 1.40657 1.67421 1.30033 1.18121 0.89770 0.94134 1.05814 1.18603 1.05626 0.91092 1.36444 0.91702 1.26217 0.95111 1.03493 0.92784 1.70059 1.15910 1.36240 1.23402 0.85517 0.78695 0.79135 0.78314 1.18716 1.19916 1.20721 0.91767 0.90865 0.91164 0.92902 0.87696 0.92902 0.93536 0.88253 0.92630 0.93222 0.87839 0.94632 0.79135 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.70 10.23 71.24 0.73 -0.97 16 2 C -0.01 -0.43 7.27 43.68 0.32 -0.11 16 3 N -0.32 -15.38 11.50 -46.40 -0.53 -15.91 16 4 N -0.38 -17.47 3.45 -416.77 -1.44 -18.91 16 5 C 0.17 5.96 1.16 3.61 0.00 5.97 16 6 C -0.15 -4.23 8.50 71.98 0.61 -3.62 16 7 C -0.13 -3.74 7.96 71.98 0.57 -3.16 16 8 C -0.15 -4.92 8.50 71.98 0.61 -4.31 16 9 C 0.14 7.41 6.81 84.71 0.58 7.99 16 10 O -0.43 -21.12 9.00 -85.67 -0.77 -21.89 16 11 C -0.07 -3.78 5.67 -21.15 -0.12 -3.90 16 12 C -0.48 -27.23 9.07 23.35 0.21 -27.02 16 13 H 0.06 3.55 7.69 -2.91 -0.02 3.53 16 14 C 0.04 1.91 5.10 85.12 0.43 2.35 16 15 N -0.83 -46.95 10.74 21.78 0.23 -46.72 16 16 Si 0.96 41.65 29.60 68.60 2.03 43.68 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 21 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 22 H 0.07 2.71 7.89 -2.39 -0.02 2.69 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.05 1.61 6.53 -2.39 -0.02 1.59 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.91 6.93 -2.39 -0.02 1.90 16 30 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.36 14.77 8.45 -74.06 -0.63 14.14 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -68.00 274.97 3.95 -64.05 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.48 Total: 22.50 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.95 Total: -26.79 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.74 Total: -81.54 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.77 Total: -21.89 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.00 3.95 -64.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.102 kcal (2) G-P(sol) polarization free energy of solvation -67.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds