Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47132 * 269.99422 * 3 2 1 5 5 H 1.48500 * 109.47272 * 29.99533 * 3 2 1 6 6 H 1.48497 * 109.47008 * 149.99783 * 3 2 1 7 7 C 1.38819 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99667 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99512 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.53499 * 114.20556 * 174.99995 * 11 10 9 13 13 N 1.47072 * 87.98256 * 139.65727 * 12 11 10 14 14 C 1.34777 * 136.05745 * 152.84894 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27198 * 14 13 12 17 17 C 1.52999 * 117.49844 * 248.46973 * 16 14 13 18 18 C 1.52996 * 117.49546 * 179.81078 * 16 14 13 19 19 C 1.47067 * 87.88518 * 333.09734 * 13 12 11 20 20 H 0.96995 * 120.00404 * 0.02562 * 1 2 3 21 21 H 0.97000 * 120.00232 * 0.02562 * 9 7 2 22 22 H 1.08999 * 109.47244 * 60.00234 * 10 9 7 23 23 H 1.09001 * 109.47262 * 299.99679 * 10 9 7 24 24 H 1.09000 * 113.41263 * 41.79654 * 11 10 9 25 25 H 1.08991 * 113.46673 * 24.87527 * 12 11 10 26 26 H 1.08996 * 113.51809 * 254.44041 * 12 11 10 27 27 H 1.08995 * 115.54871 * 34.13521 * 16 14 13 28 28 H 1.09007 * 117.49732 * 359.97438 * 17 16 14 29 29 H 1.08998 * 117.49972 * 145.01907 * 17 16 14 30 30 H 1.09004 * 117.49547 * 214.97632 * 18 16 14 31 31 H 1.08995 * 117.50518 * 359.97085 * 18 16 14 32 32 H 1.09000 * 113.46426 * 141.67517 * 19 13 12 33 33 H 1.08998 * 113.47159 * 272.12208 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 6 1.7151 -6.2044 -0.1222 13 7 0.7441 -6.6911 0.8693 14 6 0.1663 -7.8728 1.1628 15 8 0.4381 -8.8591 0.5114 16 6 -0.8226 -7.9673 2.2961 17 6 -0.4028 -8.7594 3.5359 18 6 -1.4471 -9.3355 2.5764 19 6 0.6762 -5.3195 1.3957 20 1 -0.4850 0.8400 -0.0004 21 1 0.3556 -2.3881 -0.0002 22 1 2.6848 -3.7145 0.8905 23 1 2.6848 -3.7145 -0.8895 24 1 0.2159 -4.6642 -0.6671 25 1 2.7461 -6.2317 0.2302 26 1 1.5941 -6.6567 -1.1065 27 1 -1.4480 -7.0877 2.4488 28 1 0.5886 -9.2126 3.5317 29 1 -0.7523 -8.4012 4.5042 30 1 -2.4834 -9.3561 2.9140 31 1 -1.1432 -10.1673 1.9410 32 1 -0.3270 -5.0202 1.6990 33 1 1.4277 -5.1088 2.1565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260347456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = 17.583971 kcal Electronic energy + Delta-G solvation = -14845.286567 eV Core-core repulsion = 12293.676904 eV Total energy + Delta-G solvation = -2551.609662 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.55611 -39.59672 -36.97005 -36.31242 -33.38518 -31.05513 -27.67015 -27.02303 -25.17521 -23.77951 -23.31443 -21.54382 -19.87332 -19.09227 -18.37957 -17.10403 -17.07080 -16.44273 -15.96138 -15.33219 -15.24054 -15.03625 -14.35883 -14.14967 -13.62525 -13.54063 -13.11406 -12.88281 -12.66263 -12.46617 -12.25527 -11.98244 -11.86776 -11.58617 -11.51281 -11.44836 -10.95568 -10.83103 -9.79747 -8.95509 -7.91766 -5.19997 1.39261 1.51767 1.52612 1.60964 1.74814 2.59277 2.88406 3.23175 3.41093 3.48433 3.79624 3.92031 3.95728 3.98866 4.15727 4.38470 4.40550 4.52219 4.60748 4.61205 4.70017 4.73849 4.90950 4.97103 5.03598 5.15547 5.19755 5.36858 5.55036 6.30721 6.65225 7.03168 7.37962 8.13525 8.36067 9.31770 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.057269 B = 0.004682 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.804250 B = 5979.236254 C = 6229.519189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.745 5.745 10 C 0.167 3.833 11 C -0.120 4.120 12 C 0.112 3.888 13 N -0.645 5.645 14 C 0.561 3.439 15 O -0.593 6.593 16 C -0.203 4.203 17 C -0.137 4.137 18 C -0.146 4.146 19 C 0.116 3.884 20 H 0.251 0.749 21 H 0.375 0.625 22 H 0.037 0.963 23 H 0.028 0.972 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -14.329 6.803 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.040 3.960 11 C -0.139 4.139 12 C -0.011 4.011 13 N -0.379 5.379 14 C 0.353 3.647 15 O -0.474 6.474 16 C -0.224 4.224 17 C -0.174 4.174 18 C -0.184 4.184 19 C -0.007 4.007 20 H 0.059 0.941 21 H 0.207 0.793 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.156 0.844 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.124 -14.960 6.529 16.323 hybrid contribution 0.011 1.120 -0.356 1.176 sum -0.113 -13.840 6.173 15.155 Atomic orbital electron populations 1.69800 1.06580 1.26029 1.59598 1.25513 0.96315 1.00964 1.03766 0.85185 0.77825 0.79716 0.77308 1.21698 1.22346 1.19304 1.19649 0.91624 0.85302 1.41026 0.90421 1.42541 1.05712 1.01052 1.89468 1.20659 0.93093 0.83524 0.98739 1.22916 0.99603 0.93378 0.98035 1.23063 0.94230 0.90473 0.93305 1.49653 1.43550 1.08642 1.36017 1.19843 0.80733 0.80024 0.84073 1.90647 1.66116 1.36642 1.54041 1.22171 1.02781 1.00002 0.97467 1.23056 1.00192 1.00578 0.93613 1.23048 0.99976 0.93550 1.01778 1.23158 1.03586 0.77025 0.96890 0.94058 0.79280 0.94531 0.95405 0.88722 0.87876 0.90754 0.84392 0.89210 0.84978 0.85314 0.89335 0.89524 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.24 -13.05 9.99 84.03 0.84 -12.21 16 8 H 0.08 3.96 7.83 -2.92 -0.02 3.94 16 9 N -0.74 -35.47 5.60 -343.45 -1.92 -37.39 16 10 C 0.17 5.91 6.17 86.38 0.53 6.45 16 11 C -0.12 -3.46 4.09 -10.54 -0.04 -3.50 16 12 C 0.11 2.92 8.20 83.18 0.68 3.61 16 13 N -0.65 -17.73 3.69 -858.74 -3.17 -20.90 16 14 C 0.56 16.63 7.86 87.66 0.69 17.32 16 15 O -0.59 -21.95 17.03 -3.04 -0.05 -22.00 16 16 C -0.20 -4.36 6.01 -11.54 -0.07 -4.43 16 17 C -0.14 -2.28 10.24 30.62 0.31 -1.96 16 18 C -0.15 -2.65 10.05 30.62 0.31 -2.35 16 19 C 0.12 2.91 7.98 83.10 0.66 3.57 16 20 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 21 H 0.38 19.03 7.67 -92.71 -0.71 18.32 16 22 H 0.04 1.24 7.81 -2.39 -0.02 1.22 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.95 7.67 -2.39 -0.02 1.93 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.35 7.88 -2.39 -0.02 2.33 16 Total: -1.00 -67.58 286.76 1.93 -65.65 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.39 Total: 22.34 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.38 Total: 2.88 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -4.81 Total: -115.67 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.58 1.93 -65.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.231 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds