Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35451 * 126.77569 * 2 1 4 4 C 1.41379 * 103.98481 * 180.25955 * 3 2 1 5 5 C 1.50701 * 126.79927 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47210 * 325.60144 * 5 4 3 7 7 C 1.50693 * 109.47040 * 85.60893 * 5 4 3 8 8 H 1.08002 * 120.00040 * 359.97438 * 7 5 4 9 9 C 1.37878 * 120.00324 * 180.02562 * 7 5 4 10 10 N 1.31522 * 119.99385 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 120.00574 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46931 * 59.99675 * 11 9 7 13 13 H 1.48496 * 109.46988 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46745 * 300.00065 * 11 9 7 15 15 N 1.46900 * 109.46758 * 205.60299 * 5 4 3 16 16 C 1.46901 * 111.00088 * 89.46222 * 15 5 4 17 17 C 1.53001 * 109.47128 * 151.76521 * 16 15 5 18 18 C 1.53002 * 109.47362 * 271.76985 * 16 15 5 19 19 N 1.30178 * 106.39393 * 0.02562 * 4 3 2 20 20 O 1.20917 * 111.60821 * 359.97438 * 19 4 3 21 21 H 1.08996 * 109.47339 * 179.70947 * 1 2 3 22 22 H 1.09003 * 109.47007 * 299.70825 * 1 2 3 23 23 H 1.09002 * 109.47199 * 59.71097 * 1 2 3 24 24 H 1.08001 * 128.00451 * 0.23196 * 3 2 1 25 25 H 0.97003 * 119.99715 * 180.02562 * 10 9 7 26 26 H 1.00894 * 111.00210 * 325.50621 * 15 5 4 27 27 H 1.09006 * 109.46812 * 31.76857 * 16 15 5 28 28 H 1.09006 * 109.46999 * 60.00451 * 17 16 15 29 29 H 1.09000 * 109.46744 * 179.97438 * 17 16 15 30 30 H 1.08996 * 109.47340 * 300.00176 * 17 16 15 31 31 H 1.08993 * 109.46768 * 299.99775 * 18 16 15 32 32 H 1.09001 * 109.46800 * 59.99694 * 18 16 15 33 33 H 1.09001 * 109.47139 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 -0.0062 5 6 4.9210 1.3001 -0.0083 6 1 4.8031 2.2172 -0.5856 7 6 5.3040 1.6438 1.4080 8 1 4.6695 1.3405 2.2277 9 6 6.4639 2.3462 1.6575 10 7 7.2363 2.7159 0.6592 11 14 6.9384 2.7729 3.4131 12 1 7.0993 1.5237 4.1998 13 1 8.2185 3.5255 3.4109 14 1 5.8741 3.6090 4.0242 15 7 5.9734 0.4726 -0.6131 16 6 6.0378 0.6815 -2.0657 17 6 7.4639 0.4225 -2.5555 18 6 5.0760 -0.2828 -2.7628 19 7 3.4763 -0.7564 -0.0098 20 8 2.3095 -1.0736 -0.0062 21 1 -0.3634 -1.0276 -0.0052 22 1 -0.3633 0.5093 0.8926 23 1 -0.3634 0.5183 -0.8874 24 1 2.0344 2.1271 0.0034 25 1 8.0525 3.2098 0.8347 26 1 5.8372 -0.5027 -0.3937 27 1 5.7547 1.7082 -2.2980 28 1 7.7470 -0.6042 -2.3232 29 1 7.5116 0.5771 -3.6334 30 1 8.1491 1.1095 -2.0589 31 1 5.3591 -1.3094 -2.5306 32 1 4.0600 -0.0982 -2.4139 33 1 5.1235 -0.1275 -3.8407 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260371981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = 55.456775 kcal Electronic energy + Delta-G solvation = -15862.464754 eV Core-core repulsion = 13312.497379 eV Total energy + Delta-G solvation = -2549.967374 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.13687 -36.71840 -33.66849 -32.93118 -32.19905 -29.67853 -27.37356 -26.36460 -25.97232 -23.17558 -22.07529 -19.85169 -18.93304 -17.06835 -16.55393 -16.23001 -14.69865 -14.33393 -14.06371 -13.50381 -13.30618 -13.09879 -12.86608 -12.40785 -12.24832 -11.98194 -11.59681 -11.55829 -10.97618 -10.82443 -10.80505 -10.46512 -10.37170 -10.04833 -9.96482 -9.55657 -8.86089 -8.53670 -8.37533 -6.91404 -5.88333 -4.01204 2.11525 3.15026 3.36805 3.41036 3.45696 3.74392 4.50015 4.99229 5.13987 5.32502 5.49903 5.51230 5.69294 5.73785 5.79657 5.91853 5.94579 6.14575 6.23297 6.33070 6.38372 6.49031 6.61254 6.65745 6.89913 6.99560 7.13243 7.24155 7.92431 8.17516 8.59738 8.81785 9.06784 9.17924 9.65695 11.16352 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.011286 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.471052 B = 2480.318715 C = 3555.085090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.064 4.064 3 C -0.228 4.228 4 C 0.037 3.963 5 C 0.292 3.708 6 H 0.053 0.947 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.088 3.912 10 N -0.848 5.848 11 Si 0.889 3.111 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.279 1.279 15 N -0.639 5.639 16 C 0.083 3.917 17 C -0.129 4.129 18 C -0.175 4.175 19 N -0.379 5.379 20 O 0.078 5.922 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.162 0.838 25 H 0.257 0.743 26 H 0.324 0.676 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 -2.891 -4.355 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.128 4.128 3 C -0.250 4.250 4 C -0.124 4.124 5 C 0.183 3.817 6 H 0.071 0.929 7 C -0.561 4.561 8 H 0.069 0.931 9 C -0.119 4.119 10 N -0.483 5.483 11 Si 0.716 3.284 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.205 1.205 15 N -0.267 5.267 16 C -0.028 4.028 17 C -0.187 4.187 18 C -0.235 4.235 19 N -0.088 5.088 20 O 0.016 5.984 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.100 0.900 24 H 0.179 0.821 25 H 0.067 0.933 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.569 -3.382 -4.296 9.337 hybrid contribution -0.898 0.535 0.713 1.265 sum -8.467 -2.847 -3.583 9.624 Atomic orbital electron populations 1.20175 0.85106 1.03682 1.03330 1.24338 0.95864 0.87142 1.05430 1.22449 0.92292 1.00415 1.09819 1.25569 1.00135 0.89740 0.96914 1.18009 0.77537 0.89538 0.96657 0.92935 1.20679 1.08176 1.37002 0.90242 0.93073 1.24846 0.95803 0.94845 0.96375 1.70039 1.12392 1.35703 1.30173 0.86753 0.77628 0.78422 0.85576 1.20351 1.21301 1.20454 1.61006 1.49299 1.10401 1.06026 1.21524 0.93712 0.97629 0.89951 1.21676 0.97765 1.01198 0.98050 1.22603 1.00416 1.00578 0.99871 1.73666 0.95816 1.17160 1.22163 1.84762 1.11807 1.33083 1.68720 0.90654 0.89891 0.89995 0.82073 0.93308 0.85804 0.91596 0.94030 0.94538 0.91463 0.93251 0.93756 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.45 36.01 0.38 -0.31 16 2 C -0.06 -1.05 7.49 -35.30 -0.26 -1.31 16 3 C -0.23 -4.31 11.06 -39.38 -0.44 -4.74 16 4 C 0.04 0.83 4.63 -82.10 -0.38 0.45 16 5 C 0.29 7.34 2.38 -70.02 -0.17 7.17 16 6 H 0.05 1.41 7.31 -51.93 -0.38 1.03 16 7 C -0.52 -14.48 8.75 -34.44 -0.30 -14.78 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.09 2.44 5.39 -17.82 -0.10 2.35 16 10 N -0.85 -24.02 12.77 55.43 0.71 -23.31 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 N -0.64 -15.50 5.36 -102.17 -0.55 -16.04 16 16 C 0.08 1.74 3.21 -67.71 -0.22 1.52 16 17 C -0.13 -2.48 9.52 37.16 0.35 -2.12 16 18 C -0.18 -3.27 8.91 37.16 0.33 -2.93 16 19 N -0.38 -8.29 10.65 33.42 0.36 -7.93 16 20 O 0.08 1.49 11.20 17.18 0.19 1.68 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.16 2.71 8.06 -52.49 -0.42 2.29 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.32 7.92 7.41 -39.29 -0.29 7.63 16 27 H 0.07 1.47 7.32 -51.93 -0.38 1.09 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.04 0.87 6.31 -51.93 -0.33 0.54 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 280.18 15.07 4.22 4.22 Total: -1.00 -29.64 280.18 -5.61 -35.26 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.72 Total: 4.41 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.80 Total: -14.71 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.52 Total: -47.29 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.19 Total: 1.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.64 -5.61 -35.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.712 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds