Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47131 * 270.00098 * 3 2 1 5 5 H 1.48494 * 109.47318 * 29.99991 * 3 2 1 6 6 H 1.48504 * 109.47362 * 150.00315 * 3 2 1 7 7 C 1.38952 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00010 * 187.41150 * 7 2 1 9 9 N 1.37092 * 120.00044 * 7.40577 * 7 2 1 10 10 C 1.34595 * 123.52777 * 221.60235 * 9 7 2 11 11 O 1.21287 * 126.03957 * 358.43380 * 10 9 7 12 12 C 1.51815 * 107.92114 * 178.40557 * 10 9 7 13 13 C 1.54792 * 102.41586 * 345.07981 * 12 10 9 14 14 N 1.36338 * 123.52282 * 41.60572 * 9 7 2 15 15 C 1.46899 * 111.00338 * 76.74220 * 14 9 7 16 16 C 1.54263 * 110.03225 * 48.46165 * 15 14 9 17 17 C 1.54968 * 104.16116 * 217.14226 * 16 15 14 18 18 C 1.54886 * 102.77955 * 37.88782 * 17 16 15 19 19 C 1.53880 * 110.03078 * 291.24939 * 15 14 9 20 20 H 0.96997 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.84639 * 103.36097 * 12 10 9 22 22 H 1.08997 * 110.85130 * 226.79113 * 12 10 9 23 23 H 1.09000 * 110.94740 * 142.24673 * 13 12 10 24 24 H 1.09001 * 110.94731 * 265.95327 * 13 12 10 25 25 H 1.08992 * 110.02062 * 169.85811 * 15 14 9 26 26 H 1.09005 * 110.48975 * 335.78771 * 16 15 14 27 27 H 1.09004 * 110.48855 * 98.42962 * 16 15 14 28 28 H 1.08999 * 110.71611 * 279.57002 * 17 16 15 29 29 H 1.09005 * 110.92332 * 156.29910 * 17 16 15 30 30 H 1.09002 * 110.48717 * 203.40958 * 18 17 16 31 31 H 1.08997 * 110.59791 * 80.81313 * 18 17 16 32 32 H 1.08995 * 110.02919 * 238.57214 * 19 15 14 33 33 H 1.09004 * 110.02672 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0821 -1.2073 0.1201 9 7 1.3320 -2.3856 -0.1541 10 6 1.6053 -3.4963 0.5552 11 8 2.4804 -3.6147 1.3867 12 6 0.6243 -4.5746 0.1313 13 6 -0.4552 -3.7635 -0.6255 14 7 0.3115 -2.5592 -1.0414 15 6 0.8235 -2.7077 -2.4102 16 6 1.9683 -3.7414 -2.4370 17 6 2.9712 -3.1698 -3.4708 18 6 2.9090 -1.6457 -3.2020 19 6 1.4211 -1.3758 -2.8968 20 1 -0.4850 0.8400 0.0004 21 1 1.1030 -5.2958 -0.5311 22 1 0.1964 -5.0733 1.0008 23 1 -0.8209 -4.3148 -1.4917 24 1 -1.2767 -3.4938 0.0382 25 1 0.0207 -3.0224 -3.0769 26 1 2.4355 -3.8189 -1.4551 27 1 1.5971 -4.7135 -2.7615 28 1 2.6486 -3.3963 -4.4870 29 1 3.9758 -3.5530 -3.2917 30 1 3.2244 -1.0894 -4.0848 31 1 3.5282 -1.3819 -2.3446 32 1 0.9088 -1.0446 -3.8000 33 1 1.3308 -0.6192 -2.1174 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = 16.751464 kcal Electronic energy + Delta-G solvation = -16940.207934 eV Core-core repulsion = 14388.562171 eV Total energy + Delta-G solvation = -2551.645763 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36917 -36.81829 -35.10750 -33.30370 -30.50578 -29.50783 -27.88039 -25.94092 -24.99877 -21.75363 -20.11315 -19.84254 -19.29984 -16.93538 -15.83177 -15.40031 -15.09678 -14.31789 -14.12503 -13.70135 -13.25501 -12.72730 -12.70363 -12.37654 -11.97824 -11.59343 -11.23801 -11.19634 -11.04411 -10.68434 -10.48426 -10.36569 -10.27428 -10.12397 -10.02890 -9.74525 -8.94026 -8.74547 -8.12953 -6.81834 -6.16027 -3.98441 3.17968 3.26983 3.30028 3.81837 4.03388 4.38488 5.08177 5.22613 5.27284 5.33782 5.38794 5.59158 5.66061 5.72192 6.02642 6.11247 6.14481 6.16018 6.22344 6.34064 6.40967 6.51953 6.53438 6.62332 6.79063 6.89044 7.05577 7.31547 7.55871 7.74680 8.32180 8.75325 9.11961 9.55881 10.12854 10.82236 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.015639 C = 0.012322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.827082 B = 1789.977439 C = 2271.884324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.061 3.939 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.314 4.314 8 H 0.090 0.910 9 N -0.278 5.278 10 C 0.448 3.552 11 O -0.574 6.574 12 C -0.191 4.191 13 C 0.032 3.968 14 N -0.261 5.261 15 C 0.057 3.943 16 C -0.158 4.158 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.120 4.120 20 H 0.264 0.736 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 -3.849 -7.189 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.149 4.149 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.442 4.442 8 H 0.108 0.892 9 N -0.085 5.085 10 C 0.234 3.766 11 O -0.456 6.456 12 C -0.233 4.233 13 C -0.096 4.096 14 N -0.075 5.075 15 C -0.052 4.052 16 C -0.197 4.197 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.158 4.158 20 H 0.074 0.926 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.828 -3.236 -6.760 7.540 hybrid contribution 0.676 -0.029 -0.296 0.738 sum -0.152 -3.265 -7.055 7.776 Atomic orbital electron populations 1.70043 1.05698 1.26784 1.42942 1.25398 0.95240 0.99104 0.95162 0.86341 0.80086 0.82158 0.78646 1.19954 1.20699 1.19199 1.19023 0.91136 0.81140 1.52906 0.89246 1.43182 1.28641 1.09514 1.27166 1.20918 0.86674 0.84964 0.84039 1.90543 1.36125 1.82522 1.36427 1.22935 0.99123 0.99001 1.02224 1.23487 0.96690 0.90047 0.99407 1.65701 1.12044 1.33239 0.96490 1.23033 0.95260 0.95111 0.91816 1.23111 0.98016 0.97986 1.00600 1.22370 0.98420 0.96744 0.97959 1.22304 0.98250 0.94688 1.00429 1.22295 0.93422 0.98913 1.01129 0.92552 0.89896 0.89225 0.90710 0.89223 0.90904 0.90604 0.93003 0.92522 0.92670 0.93160 0.91042 0.93889 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.89 12.69 55.50 0.70 -21.18 16 2 C 0.06 1.58 3.44 -17.47 -0.06 1.52 16 3 Si 0.90 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.31 -8.42 7.37 -14.93 -0.11 -8.53 16 8 H 0.09 2.49 7.84 -52.48 -0.41 2.08 16 9 N -0.28 -7.02 1.93 -10.64 -0.02 -7.04 16 10 C 0.45 11.32 6.24 -10.52 -0.07 11.26 16 11 O -0.57 -16.59 17.73 5.55 0.10 -16.49 16 12 C -0.19 -3.68 6.26 -26.39 -0.17 -3.85 16 13 C 0.03 0.59 7.06 -1.89 -0.01 0.58 16 14 N -0.26 -5.81 4.20 -103.17 -0.43 -6.24 16 15 C 0.06 1.10 2.91 -66.59 -0.19 0.91 16 16 C -0.16 -2.87 4.77 -25.03 -0.12 -2.99 16 17 C -0.12 -1.93 6.91 -24.70 -0.17 -2.10 16 18 C -0.12 -2.17 6.75 -25.07 -0.17 -2.34 16 19 C -0.12 -2.41 5.81 -25.61 -0.15 -2.56 16 20 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 21 H 0.08 1.44 7.21 -51.93 -0.37 1.06 16 22 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 23 H 0.07 1.14 7.64 -51.93 -0.40 0.74 16 24 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 25 H 0.07 1.28 7.88 -51.93 -0.41 0.87 16 26 H 0.08 1.62 4.76 -51.93 -0.25 1.38 16 27 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.44 7.71 -51.93 -0.40 1.04 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 2.68 4.30 -51.93 -0.22 2.46 16 LS Contribution 257.53 15.07 3.88 3.88 Total: -1.00 -30.15 257.53 -6.56 -36.71 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.55 Total: 3.45 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.22 Total: -8.10 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.25 Total: -34.47 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.10 Total: -16.49 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.15 -6.56 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.461 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds