Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47131 * 270.00098 * 3 2 1 5 5 H 1.48494 * 109.47318 * 29.99991 * 3 2 1 6 6 H 1.48504 * 109.47362 * 150.00315 * 3 2 1 7 7 C 1.38952 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00010 * 187.41150 * 7 2 1 9 9 N 1.37092 * 120.00044 * 7.40577 * 7 2 1 10 10 C 1.34595 * 123.52777 * 221.60235 * 9 7 2 11 11 O 1.21287 * 126.03957 * 358.43380 * 10 9 7 12 12 C 1.51815 * 107.92114 * 178.40557 * 10 9 7 13 13 C 1.54792 * 102.41586 * 345.07981 * 12 10 9 14 14 N 1.36338 * 123.52282 * 41.60572 * 9 7 2 15 15 C 1.46899 * 111.00338 * 76.74220 * 14 9 7 16 16 C 1.54263 * 110.03225 * 48.46165 * 15 14 9 17 17 C 1.54968 * 104.16116 * 217.14226 * 16 15 14 18 18 C 1.54886 * 102.77955 * 37.88782 * 17 16 15 19 19 C 1.53880 * 110.03078 * 291.24939 * 15 14 9 20 20 H 0.96997 * 120.00300 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.84639 * 103.36097 * 12 10 9 22 22 H 1.08997 * 110.85130 * 226.79113 * 12 10 9 23 23 H 1.09000 * 110.94740 * 142.24673 * 13 12 10 24 24 H 1.09001 * 110.94731 * 265.95327 * 13 12 10 25 25 H 1.08992 * 110.02062 * 169.85811 * 15 14 9 26 26 H 1.09005 * 110.48975 * 335.78771 * 16 15 14 27 27 H 1.09004 * 110.48855 * 98.42962 * 16 15 14 28 28 H 1.08999 * 110.71611 * 279.57002 * 17 16 15 29 29 H 1.09005 * 110.92332 * 156.29910 * 17 16 15 30 30 H 1.09002 * 110.48717 * 203.40958 * 18 17 16 31 31 H 1.08997 * 110.59791 * 80.81313 * 18 17 16 32 32 H 1.08995 * 110.02919 * 238.57214 * 19 15 14 33 33 H 1.09004 * 110.02672 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0821 -1.2073 0.1201 9 7 1.3320 -2.3856 -0.1541 10 6 1.6053 -3.4963 0.5552 11 8 2.4804 -3.6147 1.3867 12 6 0.6243 -4.5746 0.1313 13 6 -0.4552 -3.7635 -0.6255 14 7 0.3115 -2.5592 -1.0414 15 6 0.8235 -2.7077 -2.4102 16 6 1.9683 -3.7414 -2.4370 17 6 2.9712 -3.1698 -3.4708 18 6 2.9090 -1.6457 -3.2020 19 6 1.4211 -1.3758 -2.8968 20 1 -0.4850 0.8400 0.0004 21 1 1.1030 -5.2958 -0.5311 22 1 0.1964 -5.0733 1.0008 23 1 -0.8209 -4.3148 -1.4917 24 1 -1.2767 -3.4938 0.0382 25 1 0.0207 -3.0224 -3.0769 26 1 2.4355 -3.8189 -1.4551 27 1 1.5971 -4.7135 -2.7615 28 1 2.6486 -3.3963 -4.4870 29 1 3.9758 -3.5530 -3.2917 30 1 3.2244 -1.0894 -4.0848 31 1 3.5282 -1.3819 -2.3446 32 1 0.9088 -1.0446 -3.8000 33 1 1.3308 -0.6192 -2.1174 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -2.579135 kcal Electronic energy + Delta-G solvation = -16941.046172 eV Core-core repulsion = 14388.562171 eV Total energy + Delta-G solvation = -2552.484000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07631 -38.53946 -36.84348 -35.20662 -32.33511 -31.11278 -29.34018 -27.52304 -26.89798 -23.37079 -21.58445 -21.51261 -21.03003 -18.73165 -17.60585 -17.07365 -16.81465 -16.10041 -15.81025 -15.30201 -14.93751 -14.39175 -14.31123 -14.00697 -13.65422 -13.38031 -12.94403 -12.79192 -12.62272 -12.56235 -12.15576 -11.83867 -11.76450 -11.56222 -11.50923 -11.32252 -10.82114 -10.59441 -10.01832 -8.64432 -8.11553 -6.02714 1.38074 1.41642 1.50579 1.93768 2.23418 2.62016 3.15889 3.67058 3.78115 3.84528 3.92563 4.09104 4.22168 4.25088 4.60269 4.65018 4.69497 4.77934 4.84320 4.91323 5.01688 5.05952 5.11826 5.16105 5.28107 5.40767 5.46994 5.59570 5.75953 6.05303 6.43845 6.81931 7.15802 7.65616 8.22034 8.83064 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.015639 C = 0.012322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.827082 B = 1789.977439 C = 2271.884324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.036 3.964 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.335 4.335 8 H 0.061 0.939 9 N -0.280 5.280 10 C 0.419 3.581 11 O -0.631 6.631 12 C -0.172 4.172 13 C 0.035 3.965 14 N -0.285 5.285 15 C 0.055 3.945 16 C -0.154 4.154 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.127 4.127 20 H 0.268 0.732 21 H 0.108 0.892 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -4.600 -9.392 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.463 4.463 8 H 0.079 0.921 9 N -0.085 5.085 10 C 0.207 3.793 11 O -0.517 6.517 12 C -0.213 4.213 13 C -0.092 4.092 14 N -0.100 5.100 15 C -0.053 4.053 16 C -0.193 4.193 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.165 4.165 20 H 0.077 0.923 21 H 0.126 0.874 22 H 0.124 0.876 23 H 0.138 0.862 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.910 -3.981 -8.992 10.018 hybrid contribution 0.982 0.216 0.369 1.071 sum -0.928 -3.765 -8.623 9.455 Atomic orbital electron populations 1.70098 1.06612 1.27629 1.43348 1.25896 0.95873 1.01211 0.94233 0.85529 0.78535 0.78754 0.79209 1.18457 1.19969 1.20123 1.18854 0.90328 0.82717 1.54415 0.92090 1.43235 1.28466 1.09034 1.27730 1.21955 0.87090 0.86674 0.83555 1.90479 1.38684 1.83780 1.38797 1.22856 0.97567 0.97560 1.03358 1.23657 0.95713 0.88826 1.01027 1.65413 1.11451 1.35870 0.97259 1.23130 0.96591 0.95210 0.90370 1.23044 0.97772 0.99278 0.99241 1.22365 0.98378 0.94814 0.99130 1.22260 0.96706 0.96726 0.99955 1.22300 0.94850 0.98581 1.00759 0.92258 0.87396 0.87616 0.86181 0.89681 0.87842 0.94335 0.89851 0.89304 0.92420 0.90910 0.94475 0.92028 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.20 12.69 21.66 0.27 -44.92 16 2 C 0.04 1.90 3.44 84.93 0.29 2.19 16 3 Si 0.96 41.84 29.55 68.60 2.03 43.87 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.34 -18.63 7.37 84.04 0.62 -18.01 16 8 H 0.06 3.65 7.84 -2.91 -0.02 3.62 16 9 N -0.28 -14.34 1.93 -306.06 -0.59 -14.93 16 10 C 0.42 21.58 6.24 88.04 0.55 22.13 16 11 O -0.63 -38.04 17.73 -3.05 -0.05 -38.10 16 12 C -0.17 -6.30 6.26 30.82 0.19 -6.11 16 13 C 0.04 1.20 7.06 86.57 0.61 1.81 16 14 N -0.29 -12.32 4.20 -480.31 -2.02 -14.34 16 15 C 0.06 2.00 2.91 45.64 0.13 2.14 16 16 C -0.15 -5.19 4.77 31.70 0.15 -5.04 16 17 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 18 C -0.12 -4.18 6.75 31.67 0.21 -3.97 16 19 C -0.13 -4.91 5.81 31.32 0.18 -4.72 16 20 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 21 H 0.11 3.40 7.21 -2.39 -0.02 3.39 16 22 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 23 H 0.12 3.02 7.64 -2.39 -0.02 3.00 16 24 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.10 3.13 7.88 -2.39 -0.02 3.11 16 26 H 0.04 1.61 4.76 -2.38 -0.01 1.60 16 27 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.53 7.71 -2.39 -0.02 1.51 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 3.67 4.30 -2.39 -0.01 3.66 16 Total: -1.00 -68.20 257.53 3.90 -64.29 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.10 Total: 16.77 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.16 Total: -12.65 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -2.33 Total: -74.19 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.05 Total: -38.10 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -68.20 3.90 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.714 kcal (2) G-P(sol) polarization free energy of solvation -68.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds