Wall clock time and date at job start Mon Mar 30 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31482 * 1 3 3 Si 1.86794 * 119.99878 * 2 1 4 4 H 1.48500 * 109.47121 * 275.06191 * 3 2 1 5 5 H 1.48506 * 109.47519 * 35.05983 * 3 2 1 6 6 H 1.48493 * 109.47555 * 155.06447 * 3 2 1 7 7 C 1.38872 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00354 * 336.67846 * 7 2 1 9 9 N 1.37198 * 119.99960 * 156.68198 * 7 2 1 10 10 C 1.46531 * 119.21276 * 324.15349 * 9 7 2 11 11 C 1.53044 * 108.81816 * 152.16033 * 10 9 7 12 12 H 1.08998 * 109.56377 * 295.66789 * 11 10 9 13 13 C 1.52845 * 110.33481 * 174.95680 * 11 10 9 14 14 C 1.53113 * 109.10242 * 179.79739 * 13 11 10 15 15 C 1.52923 * 109.78953 * 59.68042 * 14 13 11 16 16 C 1.53114 * 109.79447 * 300.79462 * 15 14 13 17 17 C 1.52829 * 109.11302 * 59.65162 * 16 15 14 18 18 H 1.08997 * 109.43003 * 58.87311 * 17 16 15 19 19 N 1.46253 * 110.92412 * 179.19318 * 17 16 15 20 20 C 1.34131 * 119.22029 * 144.13279 * 9 7 2 21 21 O 1.21586 * 118.63186 * 359.53319 * 20 9 7 22 22 H 0.96995 * 119.99863 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.57907 * 32.36096 * 10 9 7 24 24 H 1.09000 * 109.57738 * 271.95912 * 10 9 7 25 25 H 1.08996 * 109.53156 * 59.90608 * 13 11 10 26 26 H 1.09002 * 109.58901 * 299.71846 * 13 11 10 27 27 H 1.09000 * 109.42252 * 299.57913 * 14 13 11 28 28 H 1.09006 * 109.36482 * 179.74348 * 14 13 11 29 29 H 1.09002 * 109.42062 * 180.69706 * 15 14 13 30 30 H 1.08998 * 109.42070 * 60.89476 * 15 14 13 31 31 H 1.08999 * 109.53575 * 179.54423 * 16 15 14 32 32 H 1.09007 * 109.52842 * 299.76242 * 16 15 14 33 33 H 0.96998 * 119.46412 * 330.65769 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.3893 2.1082 -1.3946 5 1 1.5038 2.6195 0.8043 6 1 3.5957 1.4117 0.5902 7 6 2.0092 -1.2027 0.0005 8 1 1.5354 -2.0996 0.3712 9 7 3.2971 -1.2514 -0.4698 10 6 3.6750 -0.4099 -1.6083 11 6 5.1693 -0.0931 -1.5134 12 1 5.3604 0.5014 -0.6201 13 6 5.6281 0.6792 -2.7501 14 6 7.1230 0.9852 -2.6237 15 6 7.9108 -0.3203 -2.5079 16 6 7.4367 -1.1049 -1.2814 17 6 5.9467 -1.4114 -1.4287 18 1 5.7834 -1.9879 -2.3392 19 7 5.4557 -2.1785 -0.2844 20 6 4.1804 -2.0679 0.1238 21 8 3.8116 -2.7360 1.0703 22 1 -0.4850 0.8400 -0.0004 23 1 3.1027 0.5174 -1.5830 24 1 3.4726 -0.9412 -2.5382 25 1 5.0700 1.6124 -2.8247 26 1 5.4533 0.0777 -3.6422 27 1 7.2948 1.5923 -1.7348 28 1 7.4557 1.5322 -3.5059 29 1 8.9724 -0.0952 -2.4058 30 1 7.7530 -0.9196 -3.4046 31 1 7.9951 -2.0380 -1.2075 32 1 7.5992 -0.5096 -0.3829 33 1 6.0613 -2.7706 0.1883 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:54 Heat of formation + Delta-G solvation = -27.134665 kcal Electronic energy + Delta-G solvation = -16423.708789 eV Core-core repulsion = 13870.159981 eV Total energy + Delta-G solvation = -2553.548808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.23124 -37.64303 -35.00543 -33.72287 -32.11333 -30.81095 -28.97564 -25.69726 -24.50970 -22.38484 -21.82577 -20.02849 -18.83734 -17.09132 -16.60162 -16.06172 -15.42130 -14.68152 -14.57102 -14.03983 -13.79560 -13.53275 -12.82086 -12.73959 -12.54650 -12.22274 -11.96758 -11.72679 -11.30249 -11.01625 -10.81491 -10.63984 -10.50361 -10.32233 -9.90312 -9.72629 -9.00903 -8.70980 -8.29122 -7.65211 -6.27758 -3.82491 3.07089 3.27722 3.31840 3.81798 4.20371 4.26852 4.61557 4.71406 4.80209 4.91424 5.09309 5.25724 5.30010 5.42908 5.44945 5.50018 5.52814 5.74112 5.90063 5.95056 6.04534 6.07465 6.12704 6.17098 6.29563 6.32964 6.62494 7.09343 7.75849 7.95342 8.47985 8.87745 9.12511 9.49969 10.04279 10.85049 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.012154 C = 0.009465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.729740 B = 2303.274918 C = 2957.505792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.055 3.945 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.298 4.298 8 H 0.106 0.894 9 N -0.485 5.485 10 C 0.106 3.894 11 C -0.122 4.122 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.120 4.120 15 C -0.114 4.114 16 C -0.125 4.125 17 C 0.152 3.848 18 H 0.062 0.938 19 N -0.751 5.751 20 C 0.675 3.325 21 O -0.610 6.610 22 H 0.272 0.728 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.324 3.407 -8.075 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.149 4.149 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.426 4.426 8 H 0.124 0.876 9 N -0.212 5.212 10 C -0.017 4.017 11 C -0.141 4.141 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.163 4.163 17 C 0.046 3.954 18 H 0.080 0.920 19 N -0.410 5.410 20 C 0.377 3.623 21 O -0.491 6.491 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 14.756 3.270 -7.658 16.944 hybrid contribution 0.611 0.870 0.130 1.071 sum 15.367 4.140 -7.528 17.605 Atomic orbital electron populations 1.69786 1.05970 1.27547 1.47550 1.25292 0.95167 0.97878 0.96576 0.87051 0.81143 0.84211 0.77434 1.20360 1.21690 1.19020 1.18941 0.84626 0.96903 1.42105 0.87627 1.42729 1.09807 1.40254 1.28397 1.21741 0.92856 0.96163 0.90964 1.21849 0.95856 0.96602 0.99830 0.90132 1.21477 0.95751 1.00305 0.97277 1.21555 0.94978 0.97337 1.01864 1.21469 0.99275 0.96446 0.97992 1.21793 0.94906 1.00534 0.99070 1.20868 0.93146 0.91609 0.89755 0.91978 1.45117 1.10797 1.49667 1.35445 1.15787 0.80006 0.83855 0.82619 1.90799 1.77165 1.50094 1.31033 0.91821 0.91030 0.92367 0.91385 0.91223 0.91936 0.91785 0.91800 0.91717 0.91451 0.91315 0.76344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.96 55.49 0.77 -25.30 16 2 C 0.05 1.59 5.29 -17.47 -0.09 1.49 16 3 Si 0.87 21.31 25.03 -169.99 -4.26 17.05 16 4 H -0.28 -6.18 6.64 56.52 0.38 -5.81 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.49 6.82 56.52 0.39 -6.10 16 7 C -0.30 -8.90 9.26 -14.92 -0.14 -9.04 16 8 H 0.11 3.53 7.79 -52.49 -0.41 3.12 16 9 N -0.49 -12.54 2.56 -120.45 -0.31 -12.85 16 10 C 0.11 2.24 4.73 -4.00 -0.02 2.22 16 11 C -0.12 -2.04 2.14 -90.53 -0.19 -2.23 16 12 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 13 C -0.11 -1.39 5.28 -26.75 -0.14 -1.53 16 14 C -0.12 -1.23 5.91 -26.71 -0.16 -1.39 16 15 C -0.11 -1.08 5.91 -26.71 -0.16 -1.23 16 16 C -0.12 -1.43 5.52 -26.76 -0.15 -1.57 16 17 C 0.15 2.31 2.84 -68.01 -0.19 2.12 16 18 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 19 N -0.75 -14.24 5.38 -59.07 -0.32 -14.56 16 20 C 0.67 17.00 8.12 -87.87 -0.71 16.29 16 21 O -0.61 -17.91 16.76 5.29 0.09 -17.82 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.07 1.60 2.93 -51.93 -0.15 1.44 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 6.72 8.73 -40.82 -0.36 6.36 16 LS Contribution 256.31 15.07 3.86 3.86 Total: -1.00 -33.79 256.31 -6.84 -40.63 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.73 Total: 3.86 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.95 Total: 5.12 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.15 Total: -52.70 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.09 Total: -17.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.26 Total: 17.05 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.79 -6.84 -40.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.494 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds