Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86795 * 119.99815 * 2 1 4 4 H 1.48507 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47353 * 300.00231 * 3 2 1 6 6 H 1.48498 * 109.47258 * 60.00531 * 3 2 1 7 7 C 1.38878 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00170 * 158.88936 * 7 2 1 9 9 N 1.37199 * 120.00007 * 338.88119 * 7 2 1 10 10 C 1.34242 * 119.47162 * 133.75882 * 9 7 2 11 11 O 1.21577 * 118.72361 * 359.38190 * 10 9 7 12 12 N 1.34146 * 122.55195 * 179.09839 * 10 9 7 13 13 C 1.46413 * 121.46735 * 0.73550 * 12 10 9 14 14 C 1.53455 * 108.95369 * 330.84481 * 13 12 10 15 15 H 1.08996 * 109.93175 * 175.87191 * 14 13 12 16 16 C 1.53053 * 109.33313 * 296.63445 * 14 13 12 17 17 C 1.52941 * 109.66221 * 177.78553 * 16 14 13 18 18 C 1.53029 * 109.36042 * 299.60775 * 17 16 14 19 19 C 1.50709 * 109.15624 * 60.10301 * 18 17 16 20 20 C 1.46271 * 119.47062 * 314.04041 * 9 7 2 21 21 H 1.08998 * 109.32540 * 90.25906 * 20 9 7 22 22 H 0.97002 * 119.99910 * 175.68338 * 1 2 3 23 23 H 0.96999 * 119.27184 * 180.47034 * 12 10 9 24 24 H 1.08999 * 109.55218 * 211.00631 * 13 12 10 25 25 H 1.08991 * 109.64248 * 90.74048 * 13 12 10 26 26 H 1.09001 * 109.43987 * 297.83898 * 16 14 13 27 27 H 1.09000 * 109.44468 * 57.76496 * 16 14 13 28 28 H 1.09003 * 109.48658 * 59.57301 * 17 16 14 29 29 H 1.08998 * 109.49110 * 179.64029 * 17 16 14 30 30 H 1.09000 * 109.50159 * 180.35753 * 18 17 16 31 31 H 1.09001 * 109.50112 * 300.46804 * 18 17 16 32 32 H 1.09004 * 108.83716 * 179.78926 * 19 18 17 33 33 H 1.08998 * 108.77375 * 60.69993 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8899 2.3965 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0347 -1.2339 -0.3374 9 7 1.3923 -2.3512 0.4271 10 6 1.5085 -3.4734 -0.3004 11 8 2.1523 -3.4376 -1.3311 12 7 0.9464 -4.6342 0.0686 13 6 0.1506 -4.7430 1.2928 14 6 0.6636 -3.7183 2.3134 15 1 0.0357 -3.7349 3.2042 16 6 2.1089 -4.0556 2.6874 17 6 2.6461 -3.0071 3.6627 18 6 2.6092 -1.6294 2.9974 19 6 1.1862 -1.2957 2.6298 20 6 0.6135 -2.3316 1.6650 21 1 -0.4215 -2.0778 1.4361 22 1 -0.4850 -0.8377 -0.0632 23 1 1.0666 -5.4181 -0.4900 24 1 0.2488 -5.7478 1.7036 25 1 -0.8967 -4.5414 1.0681 26 1 2.1421 -5.0386 3.1572 27 1 2.7243 -4.0624 1.7878 28 1 2.0275 -2.9943 4.5600 29 1 3.6732 -3.2534 3.9321 30 1 2.9976 -0.8812 3.6884 31 1 3.2206 -1.6445 2.0952 32 1 1.1654 -0.3124 2.1600 33 1 0.5848 -1.2751 3.5386 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260802892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -54.748881 kcal Electronic energy + Delta-G solvation = -17041.330775 eV Core-core repulsion = 14486.584525 eV Total energy + Delta-G solvation = -2554.746250 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01343 -38.80018 -36.73482 -35.47194 -33.01374 -31.63800 -30.71654 -27.35897 -25.77454 -23.67181 -22.93472 -21.31728 -20.49417 -18.75175 -17.92768 -17.62904 -16.82875 -16.02843 -15.69738 -15.53018 -15.16439 -14.74989 -14.56521 -14.36663 -13.87261 -13.13195 -13.03928 -12.68922 -12.56090 -12.45392 -11.98250 -11.91117 -11.73440 -11.37157 -11.22654 -11.03450 -10.75975 -10.35507 -9.90779 -9.48194 -8.53833 -6.05522 1.51474 1.57186 1.78212 2.26585 2.46265 2.62657 3.08177 3.47382 3.69736 3.85786 3.94320 4.29582 4.37962 4.41624 4.60241 4.60999 4.66369 4.75789 4.83067 4.88142 5.04897 5.16585 5.33775 5.37143 5.44443 5.59679 5.66225 5.82707 6.02028 6.19610 6.36272 7.07928 7.13832 7.63993 8.21191 8.65801 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.014567 C = 0.011718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.253272 B = 1921.714774 C = 2388.907682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.017 4.017 3 Si 1.111 2.889 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.382 4.382 8 H 0.035 0.965 9 N -0.472 5.472 10 C 0.658 3.342 11 O -0.679 6.679 12 N -0.742 5.742 13 C 0.116 3.884 14 C -0.113 4.113 15 H 0.127 0.873 16 C -0.102 4.102 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.108 4.108 20 C 0.147 3.853 21 H 0.031 0.969 22 H 0.257 0.743 23 H 0.407 0.593 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -6.862 11.819 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.219 4.219 3 Si 0.932 3.068 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.053 0.947 9 N -0.197 5.197 10 C 0.361 3.639 11 O -0.565 6.565 12 N -0.401 5.401 13 C -0.007 4.007 14 C -0.132 4.132 15 H 0.145 0.855 16 C -0.140 4.140 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.146 4.146 20 C 0.043 3.957 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.243 0.757 24 H 0.135 0.865 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.365 -5.020 11.520 12.571 hybrid contribution 0.120 -1.855 -1.084 2.152 sum -0.245 -6.875 10.436 12.499 Atomic orbital electron populations 1.70835 1.07320 1.29717 1.45735 1.27436 0.96327 1.04743 0.93427 0.82979 0.74365 0.71400 0.78017 1.20179 1.21167 1.18516 1.19693 0.95992 0.86740 1.48633 0.94673 1.42622 1.50296 1.07059 1.19737 1.16443 0.82071 0.82694 0.82715 1.90701 1.50921 1.85993 1.28911 1.44842 1.57158 1.10022 1.28033 1.21771 0.94009 1.01284 0.83672 1.21959 0.98901 0.93188 0.99148 0.85501 1.21433 0.94395 0.99731 0.98430 1.21493 1.01267 0.93623 0.98126 1.21047 0.96640 0.97790 0.99685 1.21086 0.97018 0.99179 0.97332 1.20980 0.93482 0.96373 0.84826 0.95156 0.93348 0.75660 0.86468 0.92265 0.89295 0.95814 0.89711 0.91705 0.91481 0.94290 0.92722 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.19 12.88 21.65 0.28 -51.91 16 2 C -0.02 -0.97 3.13 84.90 0.27 -0.71 16 3 Si 1.11 49.93 29.70 68.60 2.04 51.97 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.38 -22.24 6.24 84.01 0.52 -21.71 16 8 H 0.04 2.27 7.88 -2.91 -0.02 2.25 16 9 N -0.47 -24.49 1.87 -631.96 -1.18 -25.68 16 10 C 0.66 34.59 6.94 179.42 1.24 35.83 16 11 O -0.68 -42.66 16.92 -3.96 -0.07 -42.72 16 12 N -0.74 -28.52 5.23 -479.34 -2.51 -31.02 16 13 C 0.12 3.25 6.62 86.55 0.57 3.83 16 14 C -0.11 -3.38 2.63 -10.57 -0.03 -3.40 16 15 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 16 C -0.10 -3.02 4.94 30.59 0.15 -2.87 16 17 C -0.11 -2.98 5.91 30.58 0.18 -2.80 16 18 C -0.11 -4.09 5.68 29.86 0.17 -3.92 16 19 C -0.11 -4.26 4.71 29.75 0.14 -4.12 16 20 C 0.15 6.15 1.97 44.99 0.09 6.24 16 21 H 0.03 1.40 6.86 -2.39 -0.02 1.39 16 22 H 0.26 15.38 6.64 -92.71 -0.62 14.76 16 23 H 0.41 13.94 8.88 -92.71 -0.82 13.12 16 24 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.02 0.91 6.42 -2.39 -0.02 0.89 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.73 6.48 -2.39 -0.02 1.71 16 32 H 0.05 2.55 5.05 -2.39 -0.01 2.54 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -75.34 250.05 2.31 -73.02 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.44 Total: 19.97 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 3.31 Total: 6.37 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -3.41 Total: -108.61 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.07 Total: -42.72 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.04 Total: 51.97 kcal Total: -75.34 2.31 -73.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260802892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.276 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds