Wall clock time and date at job start Mon Mar 30 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46888 * 179.97438 * 9 7 2 11 11 N 1.36645 * 123.51583 * 94.99824 * 10 9 7 12 12 C 1.46947 * 107.62097 * 162.75474 * 11 10 9 13 13 C 1.53194 * 111.64356 * 265.52895 * 12 11 10 14 14 C 1.55137 * 103.91283 * 213.86193 * 13 12 11 15 15 C 1.54983 * 102.89239 * 37.00760 * 14 13 12 16 16 C 1.52805 * 111.88384 * 144.67679 * 12 11 10 17 17 C 1.53717 * 103.16106 * 24.91252 * 12 11 10 18 18 C 1.34719 * 123.51409 * 274.70924 * 10 9 7 19 19 O 1.21279 * 126.03985 * 1.29362 * 18 10 9 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 22 22 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 23 23 H 1.00896 * 111.00366 * 284.40461 * 11 10 9 24 24 H 1.09002 * 110.53958 * 332.47147 * 13 12 11 25 25 H 1.09002 * 110.53788 * 95.25667 * 13 12 11 26 26 H 1.08994 * 110.73290 * 278.65291 * 14 13 12 27 27 H 1.08997 * 110.72817 * 155.35204 * 14 13 12 28 28 H 1.09008 * 110.48266 * 203.96875 * 15 14 13 29 29 H 1.08999 * 110.48632 * 81.34086 * 15 14 13 30 30 H 1.08994 * 110.11490 * 241.94387 * 16 12 11 31 31 H 1.08996 * 110.11775 * 3.54141 * 16 12 11 32 32 H 1.09001 * 110.93782 * 95.33800 * 17 12 11 33 33 H 1.09004 * 110.93133 * 218.97594 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2029 -3.6127 -0.0182 11 7 2.6177 -4.2566 1.1133 12 6 3.2119 -5.5368 0.7042 13 6 2.1914 -6.6779 0.7633 14 6 3.0350 -7.9115 1.1797 15 6 4.0548 -7.3112 2.1805 16 6 4.3956 -5.9241 1.5896 17 6 3.6594 -5.2688 -0.7417 18 6 2.7563 -4.1124 -1.1403 19 8 2.5688 -3.7097 -2.2688 20 1 -0.4850 0.8401 0.0040 21 1 0.6240 -2.5614 0.8771 22 1 0.6246 -2.5525 -0.9029 23 1 3.2828 -3.6964 1.6250 24 1 1.4260 -6.4681 1.5104 25 1 1.7386 -6.8370 -0.2153 26 1 3.5464 -8.3382 0.3170 27 1 2.4100 -8.6592 1.6679 28 1 4.9485 -7.9331 2.2335 29 1 3.6039 -7.2050 3.1671 30 1 5.3059 -5.9841 0.9932 31 1 4.5195 -5.1948 2.3900 32 1 4.7093 -4.9779 -0.7769 33 1 3.4767 -6.1381 -1.3734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260823166.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:23 Heat of formation + Delta-G solvation = -12.009443 kcal Electronic energy + Delta-G solvation = -15800.059713 eV Core-core repulsion = 13247.166784 eV Total energy + Delta-G solvation = -2552.892929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71027 -37.51523 -35.61058 -33.16108 -31.06308 -29.13600 -28.49656 -27.26501 -24.72031 -22.63986 -20.84252 -19.83816 -19.13076 -16.64632 -16.37789 -15.83184 -15.45625 -14.93581 -14.38483 -14.10656 -13.73173 -13.44152 -13.04329 -12.48794 -12.00095 -11.76543 -11.37264 -11.23755 -11.20948 -11.08694 -10.98225 -10.89291 -10.66824 -10.57224 -10.21137 -10.04738 -9.35670 -8.80546 -8.47323 -7.30385 -6.08556 -4.15089 3.26487 3.30383 3.34565 3.38457 3.58074 4.38729 4.40100 4.49035 4.60648 4.83328 5.07169 5.24331 5.25780 5.29528 5.43514 5.59110 5.67580 5.76941 5.79806 5.87883 5.99002 6.01903 6.16688 6.28886 6.37741 7.03880 7.19747 7.32766 7.67004 7.90187 8.13651 8.62217 8.81570 9.08790 9.50617 10.98756 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044015 B = 0.007082 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.987057 B = 3952.793407 C = 4073.927425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.056 0.944 9 C 0.269 3.731 10 N -0.448 5.448 11 N -0.431 5.431 12 C 0.087 3.913 13 C -0.101 4.101 14 C -0.124 4.124 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.180 4.180 18 C 0.492 3.508 19 O -0.532 6.532 20 H 0.266 0.734 21 H 0.046 0.954 22 H 0.045 0.955 23 H 0.333 0.667 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -13.976 5.199 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.074 0.926 9 C 0.152 3.848 10 N -0.270 5.270 11 N -0.156 5.156 12 C -0.004 4.004 13 C -0.139 4.139 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.222 4.222 18 C 0.276 3.724 19 O -0.407 6.407 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.154 0.846 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.629 -13.774 4.770 16.013 hybrid contribution 1.412 1.285 -0.283 1.930 sum 8.042 -12.490 4.487 15.517 Atomic orbital electron populations 1.69920 1.05987 1.27348 1.49813 1.24912 0.94916 0.99233 0.94797 0.86507 0.79508 0.82471 0.78647 1.21027 1.20183 1.20154 1.21407 0.93321 0.90758 1.52041 0.92611 1.19309 0.86342 0.80158 0.99022 1.48446 1.43358 1.34505 1.00678 1.62912 1.41765 1.01137 1.09777 1.22035 0.94164 0.91235 0.92977 1.22195 0.97240 0.92107 1.02385 1.22554 0.97487 0.97297 0.98842 1.22357 0.98931 0.95360 0.99041 1.22279 0.96572 0.98055 0.98932 1.23101 1.00958 1.00204 0.97962 1.21144 0.81238 0.84535 0.85513 1.90680 1.63765 1.65294 1.20969 0.92473 0.93586 0.93745 0.84614 0.89796 0.91509 0.91593 0.91368 0.91710 0.91233 0.90901 0.90590 0.88472 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.54 -15.40 9.38 -34.44 -0.32 -15.72 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.27 7.23 5.82 -5.19 -0.03 7.20 16 10 N -0.45 -10.05 3.35 -60.99 -0.20 -10.26 16 11 N -0.43 -7.70 7.34 1.07 0.01 -7.70 16 12 C 0.09 1.21 1.13 -131.20 -0.15 1.07 16 13 C -0.10 -1.29 6.08 -25.50 -0.16 -1.44 16 14 C -0.12 -1.18 6.92 -24.55 -0.17 -1.35 16 15 C -0.12 -1.07 6.85 -24.86 -0.17 -1.24 16 16 C -0.12 -1.27 6.18 -26.01 -0.16 -1.43 16 17 C -0.18 -2.82 6.04 -26.85 -0.16 -2.99 16 18 C 0.49 10.93 8.17 -10.35 -0.08 10.85 16 19 O -0.53 -14.11 17.70 5.56 0.10 -14.01 16 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 22 H 0.04 1.32 8.03 -51.93 -0.42 0.90 16 23 H 0.33 5.68 8.20 -181.34 -1.49 4.20 16 24 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 25 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 7.40 -51.93 -0.38 0.32 16 31 H 0.08 0.79 7.49 -51.93 -0.39 0.40 16 32 H 0.10 1.37 7.57 -51.93 -0.39 0.97 16 33 H 0.10 1.42 7.69 -51.93 -0.40 1.02 16 LS Contribution 273.54 15.07 4.12 4.12 Total: -1.00 -32.46 273.54 -7.71 -40.17 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.95 Total: -0.14 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.50 Total: -3.30 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.54 Total: -43.74 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.10 Total: -14.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.46 -7.71 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260823166.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.158 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds